Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0005312

Physical Location & Seq

Genomic Coordinates Reverse (-)

3311232 .. 3314022

Gene Structure 2791 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g05630.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGGCATTGGTTACCCATCAAATGCAGGGTTCGTTTGTGACGTATCCTTCTAGACCTTTGTCATGGAGCAAGGGGATGAAGCTGAAGCGGTATGTAACAACACTTCACATGGTTGGAAGGACAGAGAGTTGCTCTATTATGAAACACAATATTTGTTTGAGTGTAGGGGCTTCTCCCATATGTGGACCAAAACTTAAACCGTTGAGAGTTTCAGCCTTCAAGGGCAGTGCCCAGAATGATAAATCTGGTGGTAGAAAAAGTGGATCAAAGCTTCCCAAGAATTCGGTCAAAATTAAAGAGAATGAGGATACTACAGTGGGCCCTCCCCAGGCAAATGATATCCCCCTTTCCTATGCCTCTGAAGCAAATGAGAGTATTACTTCTTCCCCTGCCATTCATAACCTGTTTAAGAAATGGTTGAGAATGCTCCGAACTCAATCATCAGGTGAAGTAGTAGACGGGATTTTGGCAGAAGATCCTCCTCCGAAGGAGATATCAGAAACTGAGCACAAGACTCAAAACGAGGATAGAGACGGTATTCTAAGGATCATCTGGTGCAATTTTCTCAGTCTAAATGCTACAATAAAGATACCCTTACTTATCTTCGTCCCCTCGTACCTGGCAGTGAATATTCTTTATGGCGCTGAAGTTTCAAAGGAGTTGACTCCTTTGTGGGTTTTGGGACCCTTCATTGCAGCTCTCTACATCAAGATGCTTCAGTGGTTGTGTGCACTCTATATTTTCAGCTTCAAGCAGACTGTTAAAGTAGTCACGAACTTGCCCACTTATTACCTGGCAGCGTATAGATACATTTTTCATGGGAAGTTTAAAGAGGATATATATGCTCGTTTCTGGCAACCTGTAGTTGATATTAAGAATTTAGATTACAAGAAACTATCCAGAAGAAAGCTGAAAGTATTACAAGAGTTGATAGTGGAGAAGTACCTTGATTTTGTGGAATCAATATGGCCATATTACTGCAGAGCAATCAGATTCTTAAAGAGGGCGAATCTCATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

340

Amino Acids

38.66

Weight (kDa)

9.59

Isoelectric Point (pI)

37.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005312)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63050 AT5G63050
fragaria_vesca	FvH4_5g05630
malus_domestica	MD06G1170900.v1.1 MD14G1176600.v1.1
prunus_persica	Prupe.5G170500_v2.0.a1 Prupe.5G170500_v2.0.a1
pyrus_communis	pycom06g15240 pycom14g14750
rosa_chinensis	RchiOBHm_Chr7g0193181
rosa_laevigata	RLG00000004289 RLG00000022163 RLG00000026387
rosa_multiflora	Rmu_ssc0000092.1_g000029
rosa_roxburghii	Rroxscaffold_2G00079190 Rroxscaffold_3G00262310 Rroxscaffold_6G00395460
rosa_rugosa	Rorug02G0253700 Rorug02G0565700 Rorug07G0008100
rosa_samantha	Rh2AG645800 Rh2BG656500 Rh2CG621600 Rh2DG669900 Rh7AG133500 Rh7BG134500 Rh7CG137400 Rh7DG135500
rosa_wichuraiana	Rw7G011410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	456
AciI	CCGC	1 cut(s)	88
AclWI	GGATC	3 cut(s)	271, 470, 554
AcoI	YGGCCR	1 cut(s)	968
AcsI	RAATTY	2 cut(s)	280, 877
AcuI	CTGAAG	4 cut(s)	104, 381, 666, 701
AfaI	GTAC	2 cut(s)	617, 944
AfiI	CCNNNNNNNGG	2 cut(s)	182, 328
AgsI	TTSAA	3 cut(s)	220, 654, 751
AjnI	CCWGG	3 cut(s)	327, 618, 792
AluBI	AGCT	5 cut(s)	82, 271, 698, 747, 910
AluI	AGCT	5 cut(s)	82, 271, 698, 747, 910
Alw21I	GWGCWC	2 cut(s)	510, 733
Alw26I	GTCTC	1 cut(s)	525
Alw44I	GTGCAC	1 cut(s)	729
AlwI	GGATC	3 cut(s)	271, 470, 554
AlwNI	CAGNNNCTG	1 cut(s)	503
AoxI	GGCC	2 cut(s)	319, 968
ApaI	GGGCCC	1 cut(s)	323
ApaLI	GTGCAC	1 cut(s)	729
ApeKI	GCWGC	2 cut(s)	695, 797
ApoI	RAATTY	2 cut(s)	280, 877
AspLEI	GCGC	1 cut(s)	644
AspS9I	GGNCC	4 cut(s)	185, 319, 320, 683
AsuHPI	GGTGA	1 cut(s)	458
AvaII	GGWCC	2 cut(s)	185, 683
BaeGI	GKGCMC	3 cut(s)	232, 323, 733
BaeI	ACNNNNGTAYC	2 cut(s)	300, 333
BalI	TGGCCA	1 cut(s)	970
BanII	GRGCYC	1 cut(s)	323
BarI	GAAGNNNNNNTAC	4 cut(s)	87, 119, 367, 399
Bbv12I	GWGCWC	2 cut(s)	510, 733
BbvI	GCAGC	2 cut(s)	707, 809
BccI	CCATC	1 cut(s)	24
BciT130I	CCWGG	3 cut(s)	329, 620, 794
BciVI	GTATCC	2 cut(s)	54, 301
BcoDI	GTCTC	1 cut(s)	525
BfaI	CTAG	1 cut(s)	51
BfmI	CTRYAG	3 cut(s)	312, 861, 979
BfoI	RGCGCY	1 cut(s)	645
BfuI	GTATCC	2 cut(s)	54, 301
BisI	GCNGC	2 cut(s)	696, 798
BlsI	GCNGC	2 cut(s)	697, 799
Bme1390I	CCNGG	3 cut(s)	329, 620, 794
Bme18I	GGWCC	2 cut(s)	185, 683
BmgT120I	GGNCC	4 cut(s)	185, 319, 320, 683
BmiI	GGNNCC	3 cut(s)	321, 684, 685
BmrFI	CCNGG	3 cut(s)	329, 620, 794
BmsI	GCATC	1 cut(s)	702
BoxI	GACNNNNGTC	1 cut(s)	58
BplI	GAGNNNNNCTC	2 cut(s)	116, 148
BsaJI	CCNNGG	1 cut(s)	327
Bsc4I	CCNNNNNNNGG	2 cut(s)	182, 328
Bse3DI	GCAATG	1 cut(s)	690
BseBI	CCWGG	3 cut(s)	329, 620, 794
BseDI	CCNNGG	1 cut(s)	327
BseGI	GGATG	1 cut(s)	81
BseLI	CCNNNNNNNGG	2 cut(s)	182, 328
BseMI	GCAATG	1 cut(s)	690
BseMII	CTCAG	2 cut(s)	495, 580
BseRI	GAGGAG	1 cut(s)	471
BseSI	GKGCMC	3 cut(s)	232, 323, 733
BseXI	GCAGC	2 cut(s)	707, 809
BshFI	GGCC	2 cut(s)	321, 970
BsiHKAI	GWGCWC	2 cut(s)	510, 733
BslFI	GGGAC	2 cut(s)	593, 696
BslI	CCNNNNNNNGG	2 cut(s)	182, 328
BsmAI	GTCTC	1 cut(s)	525
BsmBI	CGTCTC	1 cut(s)	525
BsmFI	GGGAC	2 cut(s)	593, 696
BsmI	GAATGC	1 cut(s)	429
BsnI	GGCC	2 cut(s)	321, 970
Bsp120I	GGGCCC	1 cut(s)	319
Bsp1286I	GDGCHC	4 cut(s)	232, 323, 510, 733
Bsp143I	GATC	3 cut(s)	263, 475, 546
BspACI	CCGC	1 cut(s)	88
BspANI	GGCC	2 cut(s)	321, 970
BspCNI	CTCAG	2 cut(s)	496, 579
BspLI	GGNNCC	3 cut(s)	321, 684, 685
BspMAI	CTGCAG	1 cut(s)	983
BspPI	GGATC	3 cut(s)	271, 470, 554
BsrDI	GCAATG	1 cut(s)	690
BssECI	CCNNGG	1 cut(s)	327
BssMI	GATC	3 cut(s)	263, 475, 546
Bst2UI	CCWGG	3 cut(s)	329, 620, 794
Bst4CI	ACNGT	4 cut(s)	201, 316, 536, 760
BstDEI	CTNAG	3 cut(s)	504, 542, 566
BstEII	GGTNACC	1 cut(s)	10
BstF5I	GGATG	1 cut(s)	81
BstH2I	RGCGCY	1 cut(s)	645
BstHHI	GCGC	1 cut(s)	644
BstKTI	GATC	3 cut(s)	266, 478, 549
BstMAI	GTCTC	1 cut(s)	525
BstMBI	GATC	3 cut(s)	263, 475, 546
BstMWI	GCNNNNNNNGC	1 cut(s)	362
BstNI	CCWGG	3 cut(s)	329, 620, 794
BstPAI	GACNNNNGTC	1 cut(s)	58
BstPI	GGTNACC	1 cut(s)	10
BstSCI	CCNGG	3 cut(s)	327, 618, 792
BstSFI	CTRYAG	3 cut(s)	312, 861, 979
BstSLI	GKGCMC	3 cut(s)	232, 323, 733
BstV1I	GCAGC	2 cut(s)	707, 809
BstX2I	RGATCY	1 cut(s)	475
BstYI	RGATCY	1 cut(s)	475
BsuI	GTATCC	2 cut(s)	54, 301
BsuRI	GGCC	2 cut(s)	321, 970
BtsCI	GGATG	1 cut(s)	81
BtsI	GCAGTG	2 cut(s)	232, 630
BtsIMutI	CAGTG	4 cut(s)	232, 321, 630, 725
CaiI	CAGNNNCTG	1 cut(s)	503
CfoI	GCGC	1 cut(s)	644
Cfr13I	GGNCC	4 cut(s)	185, 319, 320, 683
Csp6I	GTAC	2 cut(s)	616, 943
CviAII	CATG	3 cut(s)	63, 109, 818
CviJI	RGCY	9 cut(s)	82, 170, 215, 271, 321, 698, 747, 910, 970
CviKI_1	RGCY	9 cut(s)	82, 170, 215, 271, 321, 698, 747, 910, 970
CviQI	GTAC	2 cut(s)	616, 943
DdeI	CTNAG	3 cut(s)	504, 542, 566
DpnI	GATC	3 cut(s)	265, 477, 548
DpnII	GATC	3 cut(s)	263, 475, 546
DraI	TTTAAA	1 cut(s)	829
EaeI	YGGCCR	1 cut(s)	968
Eco24I	GRGCYC	1 cut(s)	323
Eco32I	GATATC	2 cut(s)	340, 495
Eco47I	GGWCC	2 cut(s)	185, 683
Eco57I	CTGAAG	4 cut(s)	104, 381, 666, 701
Eco91I	GGTNACC	1 cut(s)	10
EcoO109I	RGGNCCY	2 cut(s)	320, 683
EcoO65I	GGTNACC	1 cut(s)	10
EcoRI	GAATTC	1 cut(s)	280
EcoRII	CCWGG	3 cut(s)	327, 618, 792
EcoRV	GATATC	2 cut(s)	340, 495
EcoT38I	GRGCYC	1 cut(s)	323
Esp3I	CGTCTC	1 cut(s)	525
FaeI	CATG	3 cut(s)	66, 112, 821
FalI	AAGNNNNNCTT	2 cut(s)	578, 610
FaqI	GGGAC	2 cut(s)	593, 696
FatI	CATG	3 cut(s)	62, 108, 817
FauNDI	CATATG	1 cut(s)	179
FblI	GTMKAC	1 cut(s)	456
Fnu4HI	GCNGC	2 cut(s)	696, 798
FokI	GGATG	1 cut(s)	88
FriOI	GRGCYC	1 cut(s)	323
Fsp4HI	GCNGC	2 cut(s)	696, 798
FspBI	CTAG	1 cut(s)	51
GlaI	GCGC	1 cut(s)	643
GluI	GCNGC	2 cut(s)	696, 798
HaeII	RGCGCY	1 cut(s)	645
HaeIII	GGCC	2 cut(s)	321, 970
HhaI	GCGC	1 cut(s)	644
Hin1II	CATG	3 cut(s)	66, 112, 821
Hin6I	GCGC	1 cut(s)	642
HinP1I	GCGC	1 cut(s)	642
HincII	GTYRAC	1 cut(s)	663
HindII	GTYRAC	1 cut(s)	663
HindIII	AAGCTT	1 cut(s)	269
HinfI	GANTC	5 cut(s)	514, 664, 959, 993, 1009
HphI	GGTGA	1 cut(s)	458
Hpy166II	GTNNAC	4 cut(s)	185, 457, 663, 731
Hpy188I	TCNGA	5 cut(s)	361, 431, 486, 499, 992
Hpy188III	TCNNGA	4 cut(s)	51, 709, 772, 900
Hpy8I	GTNNAC	4 cut(s)	185, 457, 663, 731
HpyAV	CCTTC	5 cut(s)	57, 111, 226, 481, 697
HpyCH4III	ACNGT	4 cut(s)	201, 316, 536, 760
HpyCH4IV	ACGT	1 cut(s)	41
HpyCH4V	TGCA	5 cut(s)	25, 558, 695, 731, 981
HpyF10VI	GCNNNNNNNGC	1 cut(s)	362
HpyF3I	CTNAG	3 cut(s)	504, 542, 566
HpySE526I	ACGT	1 cut(s)	41
Hsp92II	CATG	3 cut(s)	66, 112, 821
HspAI	GCGC	1 cut(s)	642
KflI	GGGWCCC	1 cut(s)	683
Kzo9I	GATC	3 cut(s)	263, 475, 546
LmnI	GCTCC	2 cut(s)	66, 432
Lsp1109I	GCAGC	2 cut(s)	707, 809
LweI	GCATC	1 cut(s)	702
MaeI	CTAG	1 cut(s)	51
MaeII	ACGT	1 cut(s)	41
MaeIII	GTNAC	4 cut(s)	10, 37, 94, 769
MalI	GATC	3 cut(s)	265, 477, 548
MboI	GATC	3 cut(s)	263, 475, 546
MboII	GAAGA	4 cut(s)	375, 485, 595, 915
MflI	RGATCY	1 cut(s)	475
MhlI	GDGCHC	4 cut(s)	232, 323, 510, 733
MlsI	TGGCCA	1 cut(s)	970
MluCI	AATT	4 cut(s)	280, 291, 559, 877
MluNI	TGGCCA	1 cut(s)	970
MlyI	GAGTC	2 cut(s)	508, 658
MmeI	TCCRAC	1 cut(s)	94
MnlI	CCTC	9 cut(s)	298, 333, 367, 489, 492, 517, 622, 826, 996
Mox20I	TGGCCA	1 cut(s)	970
MscI	TGGCCA	1 cut(s)	970
MseI	TTAA	7 cut(s)	195, 294, 408, 762, 828, 873, 998
MslI	CAYNNNNRTG	1 cut(s)	710
Msp20I	TGGCCA	1 cut(s)	970
MspR9I	CCNGG	3 cut(s)	329, 620, 794
Mva1269I	GAATGC	1 cut(s)	429
MvaI	CCWGG	3 cut(s)	329, 620, 794
MwoI	GCNNNNNNNGC	1 cut(s)	362
NdeI	CATATG	1 cut(s)	179
NdeII	GATC	3 cut(s)	263, 475, 546
NlaIII	CATG	3 cut(s)	66, 112, 821
NlaIV	GGNNCC	3 cut(s)	321, 684, 685
NmuCI	GTSAC	2 cut(s)	37, 769
PcsI	WCGNNNNNNNCGW	1 cut(s)	38
PctI	GAATGC	1 cut(s)	429
PfeI	GAWTC	3 cut(s)	959, 993, 1009
PkrI	GCNGC	2 cut(s)	697, 799
PleI	GAGTC	2 cut(s)	508, 658
PpsI	GAGTC	2 cut(s)	508, 658
PpuMI	RGGWCCY	1 cut(s)	683
PshAI	GACNNNNGTC	1 cut(s)	58
Psp5II	RGGWCCY	1 cut(s)	683
Psp6I	CCWGG	3 cut(s)	327, 618, 792
PspEI	GGTNACC	1 cut(s)	10
PspGI	CCWGG	3 cut(s)	327, 618, 792
PspN4I	GGNNCC	3 cut(s)	321, 684, 685
PspOMI	GGGCCC	1 cut(s)	319
PspPI	GGNCC	4 cut(s)	185, 319, 320, 683
PspPPI	RGGWCCY	1 cut(s)	683
PstI	CTGCAG	1 cut(s)	983
PstNI	CAGNNNCTG	1 cut(s)	503
PsuI	RGATCY	1 cut(s)	475
RsaI	GTAC	2 cut(s)	617, 944
RsaNI	GTAC	2 cut(s)	616, 943
RseI	CAYNNNNRTG	1 cut(s)	710
SaqAI	TTAA	7 cut(s)	195, 294, 408, 762, 828, 873, 998
SatI	GCNGC	2 cut(s)	696, 798
Sau3AI	GATC	3 cut(s)	263, 475, 546
Sau96I	GGNCC	4 cut(s)	185, 319, 320, 683
SchI	GAGTC	2 cut(s)	508, 658
ScrFI	CCNGG	3 cut(s)	329, 620, 794
SduI	GDGCHC	4 cut(s)	232, 323, 510, 733
SfaNI	GCATC	1 cut(s)	702
SfcI	CTRYAG	3 cut(s)	312, 861, 979
SinI	GGWCC	2 cut(s)	185, 683
SmiMI	CAYNNNNRTG	1 cut(s)	710
Sse9I	AATT	4 cut(s)	280, 291, 559, 877
SsiI	CCGC	1 cut(s)	88
SspI	AATATT	2 cut(s)	151, 631
SspMI	CTAG	1 cut(s)	51
StyD4I	CCNGG	3 cut(s)	327, 618, 792
TaaI	ACNGT	4 cut(s)	201, 316, 536, 760
TaiI	ACGT	1 cut(s)	44
TaqII	GACCGA	1 cut(s)	274
TasI	AATT	4 cut(s)	280, 291, 559, 877
TfiI	GAWTC	3 cut(s)	959, 993, 1009
Tru1I	TTAA	7 cut(s)	195, 294, 408, 762, 828, 873, 998
Tru9I	TTAA	7 cut(s)	195, 294, 408, 762, 828, 873, 998
TscAI	CASTG	4 cut(s)	232, 321, 630, 725
TseFI	GTSAC	2 cut(s)	37, 769
TseI	GCWGC	2 cut(s)	695, 797
Tsp45I	GTSAC	2 cut(s)	37, 769
TspDTI	ATGAA	5 cut(s)	92, 155, 386, 679, 806
TspRI	CASTG	4 cut(s)	232, 321, 630, 725
VneI	GTGCAC	1 cut(s)	729
VpaK11BI	GGWCC	2 cut(s)	185, 683
XapI	RAATTY	2 cut(s)	280, 877
XbaI	TCTAGA	1 cut(s)	50
XcmI	CCANNNNNNNNNTGG	1 cut(s)	790
XmiI	GTMKAC	1 cut(s)	456
XspI	CTAG	1 cut(s)	51

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.