Rroxscaffold_6G00395460

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0005312
Physical Location & Seq
Reverse (-)
16535301 .. 16539010
3710 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00395460.1

Sequence Viewer

Length: 1158 bp
ATGTCCAAAGCTGCCGTCTACACCTGGGTACTGGGACTACGAGTCCTCCGCCCCAAGGAGTACTGGGACTACGAGTCCTTCACTGGGAGTGAGGTGGAAGGAAAGAGTGATGATGGTGGGGTTGAGAGAGTATACGATGCTGTAGAAGCTCATGACAGAAGTGAGTGCTTATTTGCGGTTGTTTATCAAATTAGGCCCTGCGGAGTAAATGATTTGGTCATTAAGGTGCAGGCAATGACATTGGTTACCCATCAAATGCAGGGTTCGTTTGTGACATATCTGTCCAGGCCTTTGTCATGGAGCAAGGGGATGAAGTTGAAGCGTGTAGGGGCTTCTCCCATACGTGGACCAGAACTTAAACCATTGAGAGTTTTAGCCTTCAAGGGCAATGCCCAGAATGATAAATCTAGAGGTAGAAAAGGTGGATCAAAGCTTCCTAAGAATTCGGTCAAACTAAAAGAGAATGAGGATACCAAAGTGGGATCTCCCCAGGCAAATGATATCCCTATTTCCTATGCCCCTAAAGCAAATGAGAGTATTGCATCTTCCCCTGCCCTACATAATCTGTTTAAGAAATGGTTCAGAATGCTCCAAACACAATCATCAGATGAAGTAGTAGACGGGATTTTGGGAAAAGAACCTCCTCAAAAGGTGATATCAGAAACTGAGCACGAGACTCAAAACGATGAGAGAGATGGTATTCTAGGGATGGTTTGGTGCAGTTTTCTCAGTCTAAATGCTACAATAAAGATACCCTTGCTTATCTTGATTGTGGATGCAAGATTTTTCCCTGGAAAGATCAAAGTGAGGCTAATTGCATCTGTCCCTGGATATCATACCGCTATCGTTACACAACTTCTTGACTCATGTAGTGTAGTACCTACAGTAGTTGATGATGGATGTCAATGGTATGTGGTAAATGATGAACTACAAGTACAGACATTTGTAGGATCAGTTTCTGATGATTATTTATTGTACATGTTGTTACAGTTCCCTACCAATGTTACTGCCTGGATCTGTCAAACATTAGTCACCTCAAGTCTACTAAAGGCTGTTGGTGTTGGCTCTTTCTCTGGCAATACTATTCCAAAGACCCTTGAAAATCTTGTTGTTGATTACATGTTTCTATTATCGATCATTTTAACCCTAGCAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

385

Amino Acids

42.64

Weight (kDa)

6.96

Isoelectric Point (pI)

27.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UVB_sens_prot PF04884 315 - 377 7.1e-08 Vitamin B6 photo-protection and homoeostasis domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 280
AccI GTMKAC 4 cut(s) 18, 132, 618, 1042
AciI CCGC 4 cut(s) 49, 176, 201, 840
AclWI GGATC 4 cut(s) 433, 490, 958, 1022
AcsI RAATTY 1 cut(s) 442
AfaI GTAC 5 cut(s) 30, 62, 879, 936, 977
AfiI CCNNNNNNNGG 3 cut(s) 55, 84, 344
AflIII ACRYGT 2 cut(s) 978, 1119
AgsI TTSAA 3 cut(s) 319, 382, 1100
AhdI GACNNNNNGTC 2 cut(s) 41, 73
AjnI CCWGG 6 cut(s) 23, 284, 489, 790, 826, 1010
AluBI AGCT 3 cut(s) 11, 149, 433
AluI AGCT 3 cut(s) 11, 149, 433
Alw21I GWGCWC 1 cut(s) 672
Alw26I GTCTC 1 cut(s) 668
AlwI GGATC 4 cut(s) 433, 490, 958, 1022
AlwNI CAGNNNCTG 2 cut(s) 665, 959
AoxI GGCC 2 cut(s) 194, 287
ApeKI GCWGC 1 cut(s) 11
ApoI RAATTY 1 cut(s) 442
ArsI GACNNNNNNTTYG 1 cut(s) 32
Asp700I GAANNNNTTC 1 cut(s) 578
AspS9I GGNCC 2 cut(s) 195, 347
AsuHPI GGTGA 2 cut(s) 664, 1024
AvaII GGWCC 1 cut(s) 347
BaeI ACNNNNGTAYC 2 cut(s) 462, 495
BarI GAAGNNNNNNTAC 2 cut(s) 529, 561
BauI CACGAG 1 cut(s) 671
Bbv12I GWGCWC 1 cut(s) 672
BccI CCATC 5 cut(s) 107, 258, 689, 703, 890
BciT130I CCWGG 6 cut(s) 25, 286, 491, 792, 828, 1012
BciVI GTATCC 1 cut(s) 463
BcoDI GTCTC 1 cut(s) 668
BfaI CTAG 3 cut(s) 408, 704, 1148
BfmI CTRYAG 2 cut(s) 141, 882
BfuI GTATCC 1 cut(s) 463
BisI GCNGC 1 cut(s) 12
BlsI GCNGC 1 cut(s) 13
BmcAI AGTACT 1 cut(s) 62
Bme1390I CCNGG 6 cut(s) 25, 286, 491, 792, 828, 1012
Bme18I GGWCC 1 cut(s) 347
BmeRI GACNNNNNGTC 2 cut(s) 41, 73
BmgT120I GGNCC 2 cut(s) 195, 347
BmrFI CCNGG 6 cut(s) 25, 286, 491, 792, 828, 1012
BmrI ACTGGG 3 cut(s) 41, 73, 93
BmsI GCATC 4 cut(s) 127, 551, 766, 827
BmuI ACTGGG 3 cut(s) 41, 73, 93
BpuEI CTTGAG 1 cut(s) 1021
Bsa29I ATCGAT 1 cut(s) 1133
BsaAI YACGTR 1 cut(s) 344
BsaJI CCNNGG 5 cut(s) 24, 54, 489, 790, 826
BsaXI ACNNNNNCTCC 2 cut(s) 30, 60
Bsc4I CCNNNNNNNGG 3 cut(s) 55, 84, 344
Bse1I ACTGG 3 cut(s) 36, 68, 88
Bse3DI GCAATG 2 cut(s) 240, 394
BseBI CCWGG 6 cut(s) 25, 286, 491, 792, 828, 1012
BseCI ATCGAT 1 cut(s) 1133
BseDI CCNNGG 5 cut(s) 24, 54, 489, 790, 826
BseGI GGATG 4 cut(s) 315, 714, 781, 905
BseLI CCNNNNNNNGG 3 cut(s) 55, 84, 344
BseMI GCAATG 2 cut(s) 240, 394
BseMII CTCAG 2 cut(s) 657, 742
BseNI ACTGG 3 cut(s) 36, 68, 88
BseRI GAGGAG 1 cut(s) 633
BsgI GTGCAG 2 cut(s) 248, 739
BshFI GGCC 2 cut(s) 196, 289
BshVI ATCGAT 1 cut(s) 1133
BsiHKAI GWGCWC 1 cut(s) 672
BslFI GGGAC 3 cut(s) 48, 80, 809
BslI CCNNNNNNNGG 3 cut(s) 55, 84, 344
BsmAI GTCTC 1 cut(s) 668
BsmFI GGGAC 3 cut(s) 48, 80, 809
BsmI GAATGC 1 cut(s) 591
BsnI GGCC 2 cut(s) 196, 289
Bsp1286I GDGCHC 1 cut(s) 672
Bsp1407I TGTACA 1 cut(s) 975
Bsp143I GATC 6 cut(s) 425, 482, 798, 950, 1014, 1134
BspACI CCGC 4 cut(s) 49, 176, 201, 840
BspANI GGCC 2 cut(s) 196, 289
BspCNI CTCAG 2 cut(s) 658, 741
BspDI ATCGAT 1 cut(s) 1133
BspHI TCATGA 1 cut(s) 151
BspPI GGATC 4 cut(s) 433, 490, 958, 1022
BsrDI GCAATG 2 cut(s) 240, 394
BsrGI TGTACA 1 cut(s) 975
BsrI ACTGG 3 cut(s) 36, 68, 88
BssECI CCNNGG 5 cut(s) 24, 54, 489, 790, 826
BssMI GATC 6 cut(s) 425, 482, 798, 950, 1014, 1134
BssNAI GTATAC 1 cut(s) 133
BssSI CACGAG 1 cut(s) 671
BssT1I CCWWGG 1 cut(s) 54
Bst1107I GTATAC 1 cut(s) 133
Bst2BI CACGAG 1 cut(s) 671
Bst2UI CCWGG 6 cut(s) 25, 286, 491, 792, 828, 1012
Bst4CI ACNGT 2 cut(s) 886, 990
BstAUI TGTACA 1 cut(s) 975
BstBAI YACGTR 1 cut(s) 344
BstC8I GCNNGC 1 cut(s) 231
BstDEI CTNAG 3 cut(s) 438, 666, 728
BstEII GGTNACC 1 cut(s) 244
BstF5I GGATG 4 cut(s) 315, 714, 781, 905
BstKTI GATC 6 cut(s) 428, 485, 801, 953, 1017, 1137
BstMAI GTCTC 1 cut(s) 668
BstMBI GATC 6 cut(s) 425, 482, 798, 950, 1014, 1134
BstMWI GCNNNNNNNGC 2 cut(s) 146, 524
BstNI CCWGG 6 cut(s) 25, 286, 491, 792, 828, 1012
BstNSI RCATGY 2 cut(s) 982, 1123
BstPI GGTNACC 1 cut(s) 244
BstSCI CCNGG 6 cut(s) 23, 284, 489, 790, 826, 1010
BstSFI CTRYAG 2 cut(s) 141, 882
BstX2I RGATCY 2 cut(s) 482, 1014
BstYI RGATCY 2 cut(s) 482, 1014
BstZ17I GTATAC 1 cut(s) 133
Bsu15I ATCGAT 1 cut(s) 1133
BsuI GTATCC 1 cut(s) 463
BsuRI GGCC 2 cut(s) 196, 289
BsuTUI ATCGAT 1 cut(s) 1133
BtsCI GGATG 4 cut(s) 315, 714, 781, 905
BtsIMutI CAGTG 1 cut(s) 81
Cac8I GCNNGC 1 cut(s) 231
CaiI CAGNNNCTG 2 cut(s) 665, 959
CciI TCATGA 1 cut(s) 151
Cfr13I GGNCC 2 cut(s) 195, 347
ClaI ATCGAT 1 cut(s) 1133
Csp6I GTAC 5 cut(s) 29, 61, 878, 935, 976
CviAII CATG 5 cut(s) 152, 297, 867, 979, 1120
CviQI GTAC 5 cut(s) 29, 61, 878, 935, 976
DdeI CTNAG 3 cut(s) 438, 666, 728
DpnI GATC 6 cut(s) 427, 484, 800, 952, 1016, 1136
DpnII GATC 6 cut(s) 425, 482, 798, 950, 1014, 1134
DrdI GACNNNNNNGTC 1 cut(s) 280
DriI GACNNNNNGTC 2 cut(s) 41, 73
DseDI GACNNNNNNGTC 1 cut(s) 280
Eam1105I GACNNNNNGTC 2 cut(s) 41, 73
EciI GGCGGA 1 cut(s) 38
Eco130I CCWWGG 1 cut(s) 54
Eco147I AGGCCT 1 cut(s) 289
Eco32I GATATC 3 cut(s) 502, 657, 833
Eco47I GGWCC 1 cut(s) 347
Eco91I GGTNACC 1 cut(s) 244
EcoO109I RGGNCCY 1 cut(s) 195
EcoO65I GGTNACC 1 cut(s) 244
EcoRI GAATTC 1 cut(s) 442
EcoRII CCWGG 6 cut(s) 23, 284, 489, 790, 826, 1010
EcoRV GATATC 3 cut(s) 502, 657, 833
EcoT14I CCWWGG 1 cut(s) 54
ErhI CCWWGG 1 cut(s) 54
FaeI CATG 5 cut(s) 155, 300, 870, 982, 1123
FalI AAGNNNNNCTT 2 cut(s) 740, 772
FaqI GGGAC 3 cut(s) 48, 80, 809
FatI CATG 5 cut(s) 151, 296, 866, 978, 1119
FblI GTMKAC 4 cut(s) 18, 132, 618, 1042
Fnu4HI GCNGC 1 cut(s) 12
FokI GGATG 4 cut(s) 322, 721, 788, 912
Fsp4HI GCNGC 1 cut(s) 12
FspBI CTAG 3 cut(s) 408, 704, 1148
GluI GCNGC 1 cut(s) 12
HaeIII GGCC 2 cut(s) 196, 289
Hin1II CATG 5 cut(s) 155, 300, 870, 982, 1123
HindIII AAGCTT 1 cut(s) 431
HinfI GANTC 4 cut(s) 42, 74, 676, 863
HphI GGTGA 2 cut(s) 664, 1024
Hpy166II GTNNAC 5 cut(s) 19, 133, 347, 619, 1043
Hpy188I TCNGA 4 cut(s) 584, 607, 661, 961
Hpy188III TCNNGA 4 cut(s) 152, 408, 766, 860
Hpy8I GTNNAC 5 cut(s) 19, 133, 347, 619, 1043
HpyAV CCTTC 3 cut(s) 88, 92, 388
HpyCH4III ACNGT 2 cut(s) 886, 990
HpyCH4IV ACGT 1 cut(s) 343
HpyCH4V TGCA 6 cut(s) 229, 259, 542, 720, 779, 818
HpyF10VI GCNNNNNNNGC 2 cut(s) 146, 524
HpyF3I CTNAG 3 cut(s) 438, 666, 728
HpySE526I ACGT 1 cut(s) 343
Hsp92II CATG 5 cut(s) 155, 300, 870, 982, 1123
Kzo9I GATC 6 cut(s) 425, 482, 798, 950, 1014, 1134
LmnI GCTCC 2 cut(s) 300, 594
LweI GCATC 4 cut(s) 127, 551, 766, 827
MaeI CTAG 3 cut(s) 408, 704, 1148
MaeII ACGT 1 cut(s) 343
MaeIII GTNAC 6 cut(s) 244, 271, 847, 984, 1003, 1030
MalI GATC 6 cut(s) 427, 484, 800, 952, 1016, 1136
MboI GATC 6 cut(s) 425, 482, 798, 950, 1014, 1134
MboII GAAGA 1 cut(s) 537
MflI RGATCY 2 cut(s) 482, 1014
MhlI GDGCHC 1 cut(s) 672
MluCI AATT 3 cut(s) 189, 442, 813
MlyI GAGTC 4 cut(s) 51, 83, 670, 857
MnlI CCTC 8 cut(s) 56, 85, 404, 460, 651, 654, 801, 1045
MroXI GAANNNNTTC 1 cut(s) 578
MseI TTAA 4 cut(s) 222, 357, 570, 1142
MslI CAYNNNNRTG 1 cut(s) 224
MspR9I CCNGG 6 cut(s) 25, 286, 491, 792, 828, 1012
Mva1269I GAATGC 1 cut(s) 591
MvaI CCWGG 6 cut(s) 25, 286, 491, 792, 828, 1012
MwoI GCNNNNNNNGC 2 cut(s) 146, 524
NdeII GATC 6 cut(s) 425, 482, 798, 950, 1014, 1134
NlaIII CATG 5 cut(s) 155, 300, 870, 982, 1123
NmuCI GTSAC 2 cut(s) 271, 1030
NspI RCATGY 2 cut(s) 982, 1123
PagI TCATGA 1 cut(s) 151
PceI AGGCCT 1 cut(s) 289
PciI ACATGT 2 cut(s) 978, 1119
PctI GAATGC 1 cut(s) 591
PdmI GAANNNNTTC 1 cut(s) 578
PkrI GCNGC 1 cut(s) 13
PleI GAGTC 4 cut(s) 50, 82, 670, 857
PpsI GAGTC 4 cut(s) 50, 82, 670, 857
Ppu21I YACGTR 1 cut(s) 344
PscI ACATGT 2 cut(s) 978, 1119
Psp6I CCWGG 6 cut(s) 23, 284, 489, 790, 826, 1010
PspEI GGTNACC 1 cut(s) 244
PspGI CCWGG 6 cut(s) 23, 284, 489, 790, 826, 1010
PspPI GGNCC 2 cut(s) 195, 347
PsrI GAACNNNNNNTAC 2 cut(s) 918, 950
PstNI CAGNNNCTG 2 cut(s) 665, 959
PsuI RGATCY 2 cut(s) 482, 1014
RsaI GTAC 5 cut(s) 30, 62, 879, 936, 977
RsaNI GTAC 5 cut(s) 29, 61, 878, 935, 976
RseI CAYNNNNRTG 1 cut(s) 224
SaqAI TTAA 4 cut(s) 222, 357, 570, 1142
SatI GCNGC 1 cut(s) 12
Sau3AI GATC 6 cut(s) 425, 482, 798, 950, 1014, 1134
Sau96I GGNCC 2 cut(s) 195, 347
ScaI AGTACT 1 cut(s) 62
SchI GAGTC 4 cut(s) 51, 83, 670, 857
ScrFI CCNGG 6 cut(s) 25, 286, 491, 792, 828, 1012
SduI GDGCHC 1 cut(s) 672
SfaNI GCATC 4 cut(s) 127, 551, 766, 827
SfcI CTRYAG 2 cut(s) 141, 882
SinI GGWCC 1 cut(s) 347
SmiMI CAYNNNNRTG 1 cut(s) 224
SmlI CTYRAG 1 cut(s) 1036
SmoI CTYRAG 1 cut(s) 1036
Sse9I AATT 3 cut(s) 189, 442, 813
SseBI AGGCCT 1 cut(s) 289
SsiI CCGC 4 cut(s) 49, 176, 201, 840
SspMI CTAG 3 cut(s) 408, 704, 1148
StuI AGGCCT 1 cut(s) 289
StyD4I CCNGG 6 cut(s) 23, 284, 489, 790, 826, 1010
StyI CCWWGG 1 cut(s) 54
TaaI ACNGT 2 cut(s) 886, 990
TaiI ACGT 1 cut(s) 346
TaqI TCGA 1 cut(s) 1133
TaqII GACCGA 1 cut(s) 436
TasI AATT 3 cut(s) 189, 442, 813
TatI WGTACW 3 cut(s) 60, 934, 975
Tru1I TTAA 4 cut(s) 222, 357, 570, 1142
Tru9I TTAA 4 cut(s) 222, 357, 570, 1142
TscAI CASTG 1 cut(s) 88
TseFI GTSAC 2 cut(s) 271, 1030
TseI GCWGC 1 cut(s) 11
Tsp45I GTSAC 2 cut(s) 271, 1030
TspDTI ATGAA 3 cut(s) 326, 624, 939
TspRI CASTG 1 cut(s) 88
VpaK11BI GGWCC 1 cut(s) 347
XapI RAATTY 1 cut(s) 442
XbaI TCTAGA 1 cut(s) 407
XceI RCATGY 2 cut(s) 982, 1123
XmiI GTMKAC 4 cut(s) 18, 132, 618, 1042
XmnI GAANNNNTTC 1 cut(s) 578
XspI CTAG 3 cut(s) 408, 704, 1148
ZrmI AGTACT 1 cut(s) 62
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.