Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0005312

Physical Location & Seq

Genomic Coordinates Forward (+)

26959948 .. 26962777

Gene Structure 2830 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1176600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGGCTTTGGTTACCCATCAAATGCAGGGTTCTTATGTGACTTATCCCTCTAGGCCTTTGTCATGGAGCAAAGGGATGAAGTTGAAGCAGTGTGTAACAACACATCAAATGGTCGGGAGGAAAGAGAAGTGCTTTATGCTAAAGCGCAACCTTTGTTTAAGTGTAGGGGCTTCTCTCATGCGGGGACCAAAAGTTAAACCTTTCAGAGTTTCAGCCTTCAAGGGCAGTGCTCAGAATGATAAATCTGGAGGTAGAACAAATGGATCAAAGCTTCCCAAGAATTCGGTCAAACTAAAAGAGAATGAGGATACTATCACGGGATCTCCTCAGGCAAATGATATTCCTCTTTCTTATGCCTCTGAAGCAGATGAGAGAATTGCATCTTCCCCCGTCATTCATAGTTTATTTAAGAAATGGTTGAGAATGCTTCGAACACAATCACCAAGTGAAGTAGAAGATGGGCTTTTGGGGGAAGAACCGCCTCCAATGGAGACATCAGAAACTAAGCATGAGATTCAAAACAAGGAAAATGATGGGATTCTACGGACGGTTTGGTGCAATTTTCTGGGTCTAAACGCTACAGTAAAGATACCCTTACTTATTTTCATCCCCATGTACCTGGCAGTTAATATGATTCATGGGGCCAAAGTTTCAAAGGAGTTGACACCTTTGTGGGTTTTAGGACCCCTCATTGTAGCACTCTACATCAAGATGCTTCAGTGGTTGTGTGCACTCTATGTTTTCAGCTTCAAGCAGACTGTTAAAGTAATCAAGAATTTACCCACTTACTACATGGTGGCCTATACATACATTACACATGGGAAGCTTAAAGAGGAAATACGGGCTCGTTTCTGGCAACCTTTACTGAACGTTAAGAACTTAGACTACAAGAAATTATCCAGAAGAAAGATGAAAGCATTGCAAGGGTTGATAATCGAGAAATACCTTGATTTCGTGGAATCAATATGGCCTTATTACTGCAGAACAATCAGATTCCTAAAGAGGGCTAATCTCATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

340

Amino Acids

38.84

Weight (kDa)

9.81

Isoelectric Point (pI)

35.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005312)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63050 AT5G63050
fragaria_vesca	FvH4_5g05630
malus_domestica	MD06G1170900.v1.1 MD14G1176600.v1.1
prunus_persica	Prupe.5G170500_v2.0.a1 Prupe.5G170500_v2.0.a1
pyrus_communis	pycom06g15240 pycom14g14750
rosa_chinensis	RchiOBHm_Chr7g0193181
rosa_laevigata	RLG00000004289 RLG00000022163 RLG00000026387
rosa_multiflora	Rmu_ssc0000092.1_g000029
rosa_roxburghii	Rroxscaffold_2G00079190 Rroxscaffold_3G00262310 Rroxscaffold_6G00395460
rosa_rugosa	Rorug02G0253700 Rorug02G0565700 Rorug07G0008100
rosa_samantha	Rh2AG645800 Rh2BG656500 Rh2CG621600 Rh2DG669900 Rh7AG133500 Rh7BG134500 Rh7CG137400 Rh7DG135500
rosa_wichuraiana	Rw7G011410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	181, 479
AclI	AACGTT	1 cut(s)	870
AclWI	GGATC	2 cut(s)	271, 328
AcsI	RAATTY	2 cut(s)	280, 775
AcuI	CTGAAG	2 cut(s)	381, 701
AdeI	CACNNNGTG	1 cut(s)	446
AfaI	GTAC	1 cut(s)	617
AfiI	CCNNNNNNNGG	1 cut(s)	1003
AgsI	TTSAA	5 cut(s)	85, 220, 518, 654, 751
AjnI	CCWGG	1 cut(s)	618
AleI	CACNNNNGTG	1 cut(s)	670
AluBI	AGCT	3 cut(s)	271, 747, 826
AluI	AGCT	3 cut(s)	271, 747, 826
Alw21I	GWGCWC	2 cut(s)	232, 733
Alw26I	GTCTC	1 cut(s)	485
Alw44I	GTGCAC	1 cut(s)	729
AlwI	GGATC	2 cut(s)	271, 328
AoxI	GGCC	4 cut(s)	53, 642, 798, 968
ApaLI	GTGCAC	1 cut(s)	729
ApoI	RAATTY	2 cut(s)	280, 775
AspLEI	GCGC	1 cut(s)	147
AspS9I	GGNCC	3 cut(s)	185, 642, 683
AsuHPI	GGTGA	1 cut(s)	432
AsuII	TTCGAA	1 cut(s)	430
AvaII	GGWCC	2 cut(s)	185, 683
AxyI	CCTNAGG	1 cut(s)	327
BaeGI	GKGCMC	1 cut(s)	733
BanII	GRGCYC	1 cut(s)	847
Bbv12I	GWGCWC	2 cut(s)	232, 733
BccI	CCATC	3 cut(s)	24, 452, 527
BciT130I	CCWGG	1 cut(s)	620
BciVI	GTATCC	1 cut(s)	301
BcoDI	GTCTC	1 cut(s)	485
BfaI	CTAG	1 cut(s)	51
BfmI	CTRYAG	2 cut(s)	579, 979
BfuI	GTATCC	1 cut(s)	301
Bme1390I	CCNGG	1 cut(s)	620
Bme18I	GGWCC	2 cut(s)	185, 683
BmgT120I	GGNCC	3 cut(s)	185, 642, 683
BmiI	GGNNCC	3 cut(s)	186, 643, 685
BmrFI	CCNGG	1 cut(s)	620
BmsI	GCATC	2 cut(s)	389, 702
BpmI	CTGGAG	1 cut(s)	267
Bpu14I	TTCGAA	1 cut(s)	430
BsaXI	ACNNNNNCTCC	2 cut(s)	307, 337
Bsc4I	CCNNNNNNNGG	1 cut(s)	1003
Bse21I	CCTNAGG	1 cut(s)	327
Bse3DI	GCAATG	1 cut(s)	917
BseBI	CCWGG	1 cut(s)	620
BseGI	GGATG	2 cut(s)	81, 606
BseLI	CCNNNNNNNGG	1 cut(s)	1003
BseMI	GCAATG	1 cut(s)	917
BseMII	CTCAG	2 cut(s)	245, 341
BseRI	GAGGAG	1 cut(s)	315
BseSI	GKGCMC	1 cut(s)	733
BshFI	GGCC	4 cut(s)	55, 644, 800, 970
BsiHKAI	GWGCWC	2 cut(s)	232, 733
BslFI	GGGAC	1 cut(s)	198
BslI	CCNNNNNNNGG	1 cut(s)	1003
BsmAI	GTCTC	1 cut(s)	485
BsmFI	GGGAC	1 cut(s)	198
BsmI	GAATGC	1 cut(s)	429
BsnI	GGCC	4 cut(s)	55, 644, 800, 970
Bsp119I	TTCGAA	1 cut(s)	430
Bsp1286I	GDGCHC	3 cut(s)	232, 733, 847
Bsp143I	GATC	2 cut(s)	263, 320
BspACI	CCGC	2 cut(s)	181, 479
BspANI	GGCC	4 cut(s)	55, 644, 800, 970
BspCNI	CTCAG	2 cut(s)	244, 340
BspLI	GGNNCC	3 cut(s)	186, 643, 685
BspMAI	CTGCAG	1 cut(s)	983
BspPI	GGATC	2 cut(s)	271, 328
BspT104I	TTCGAA	1 cut(s)	430
BsrDI	GCAATG	1 cut(s)	917
BssMI	GATC	2 cut(s)	263, 320
Bst2UI	CCWGG	1 cut(s)	620
Bst4CI	ACNGT	3 cut(s)	550, 583, 760
BstBI	TTCGAA	1 cut(s)	430
BstDEI	CTNAG	4 cut(s)	231, 327, 504, 880
BstEII	GGTNACC	1 cut(s)	10
BstF5I	GGATG	2 cut(s)	81, 606
BstHHI	GCGC	1 cut(s)	147
BstKTI	GATC	2 cut(s)	266, 323
BstMAI	GTCTC	1 cut(s)	485
BstMBI	GATC	2 cut(s)	263, 320
BstMWI	GCNNNNNNNGC	1 cut(s)	362
BstNI	CCWGG	1 cut(s)	620
BstPI	GGTNACC	1 cut(s)	10
BstSCI	CCNGG	1 cut(s)	618
BstSFI	CTRYAG	2 cut(s)	579, 979
BstSLI	GKGCMC	1 cut(s)	733
BstX2I	RGATCY	1 cut(s)	320
BstXI	CCANNNNNNTGG	1 cut(s)	619
BstYI	RGATCY	1 cut(s)	320
Bsu36I	CCTNAGG	1 cut(s)	327
BsuI	GTATCC	1 cut(s)	301
BsuRI	GGCC	4 cut(s)	55, 644, 800, 970
BtsCI	GGATG	2 cut(s)	81, 606
BtsI	GCAGTG	2 cut(s)	95, 232
BtsIMutI	CAGTG	3 cut(s)	95, 232, 725
CfoI	GCGC	1 cut(s)	147
Cfr13I	GGNCC	3 cut(s)	185, 642, 683
Csp6I	GTAC	1 cut(s)	616
CviAII	CATG	7 cut(s)	63, 178, 509, 613, 638, 793, 818
CviQI	GTAC	1 cut(s)	616
DdeI	CTNAG	4 cut(s)	231, 327, 504, 880
DpnI	GATC	2 cut(s)	265, 322
DpnII	GATC	2 cut(s)	263, 320
DraIII	CACNNNGTG	1 cut(s)	446
Eco147I	AGGCCT	1 cut(s)	55
Eco24I	GRGCYC	1 cut(s)	847
Eco47I	GGWCC	2 cut(s)	185, 683
Eco57I	CTGAAG	2 cut(s)	381, 701
Eco81I	CCTNAGG	1 cut(s)	327
Eco91I	GGTNACC	1 cut(s)	10
EcoO109I	RGGNCCY	1 cut(s)	683
EcoO65I	GGTNACC	1 cut(s)	10
EcoRI	GAATTC	1 cut(s)	280
EcoRII	CCWGG	1 cut(s)	618
EcoT38I	GRGCYC	1 cut(s)	847
FaeI	CATG	7 cut(s)	66, 181, 512, 616, 641, 796, 821
FalI	AAGNNNNNCTT	4 cut(s)	447, 479, 578, 610
FaqI	GGGAC	1 cut(s)	198
FatI	CATG	7 cut(s)	62, 177, 508, 612, 637, 792, 817
FauI	CCCGC	1 cut(s)	174
FokI	GGATG	2 cut(s)	88, 593
FriOI	GRGCYC	1 cut(s)	847
FspBI	CTAG	1 cut(s)	51
GlaI	GCGC	1 cut(s)	146
GsuI	CTGGAG	1 cut(s)	267
HaeIII	GGCC	4 cut(s)	55, 644, 800, 970
HhaI	GCGC	1 cut(s)	147
Hin1II	CATG	7 cut(s)	66, 181, 512, 616, 641, 796, 821
Hin6I	GCGC	1 cut(s)	145
HinP1I	GCGC	1 cut(s)	145
HincII	GTYRAC	1 cut(s)	663
HindII	GTYRAC	1 cut(s)	663
HindIII	AAGCTT	2 cut(s)	269, 824
HinfI	GANTC	5 cut(s)	514, 538, 634, 959, 993
HphI	GGTGA	1 cut(s)	432
Hpy166II	GTNNAC	2 cut(s)	663, 731
Hpy188I	TCNGA	5 cut(s)	206, 234, 361, 499, 992
Hpy188III	TCNNGA	6 cut(s)	115, 246, 709, 772, 900, 937
Hpy8I	GTNNAC	2 cut(s)	663, 731
HpyAV	CCTTC	1 cut(s)	226
HpyCH4III	ACNGT	3 cut(s)	550, 583, 760
HpyCH4IV	ACGT	1 cut(s)	870
HpyCH4V	TGCA	6 cut(s)	25, 380, 558, 731, 922, 981
HpyF10VI	GCNNNNNNNGC	1 cut(s)	362
HpyF3I	CTNAG	4 cut(s)	231, 327, 504, 880
HpySE526I	ACGT	1 cut(s)	870
Hsp92II	CATG	7 cut(s)	66, 181, 512, 616, 641, 796, 821
HspAI	GCGC	1 cut(s)	145
Kzo9I	GATC	2 cut(s)	263, 320
LmnI	GCTCC	1 cut(s)	66
LpnPI	CCDG	8 cut(s)	11, 231, 314, 551, 605, 632, 838, 913
LweI	GCATC	2 cut(s)	389, 702
MaeI	CTAG	1 cut(s)	51
MaeII	ACGT	1 cut(s)	870
MaeIII	GTNAC	3 cut(s)	10, 37, 94
MalI	GATC	2 cut(s)	265, 322
MboI	GATC	2 cut(s)	263, 320
MboII	GAAGA	4 cut(s)	375, 467, 485, 915
MflI	RGATCY	1 cut(s)	320
MhlI	GDGCHC	3 cut(s)	232, 733, 847
MluCI	AATT	5 cut(s)	280, 375, 559, 775, 893
MseI	TTAA	7 cut(s)	158, 195, 408, 627, 762, 828, 873
MslI	CAYNNNNRTG	3 cut(s)	611, 670, 710
MspR9I	CCNGG	1 cut(s)	620
Mva1269I	GAATGC	1 cut(s)	429
MvaI	CCWGG	1 cut(s)	620
MwoI	GCNNNNNNNGC	1 cut(s)	362
NdeII	GATC	2 cut(s)	263, 320
NlaIII	CATG	7 cut(s)	66, 181, 512, 616, 641, 796, 821
NlaIV	GGNNCC	3 cut(s)	186, 643, 685
NmuCI	GTSAC	1 cut(s)	37
NspV	TTCGAA	1 cut(s)	430
OliI	CACNNNNGTG	1 cut(s)	670
PceI	AGGCCT	1 cut(s)	55
PctI	GAATGC	1 cut(s)	429
PfeI	GAWTC	5 cut(s)	514, 538, 634, 959, 993
PpuMI	RGGWCCY	1 cut(s)	683
Psp1406I	AACGTT	1 cut(s)	870
Psp5II	RGGWCCY	1 cut(s)	683
Psp6I	CCWGG	1 cut(s)	618
PspEI	GGTNACC	1 cut(s)	10
PspGI	CCWGG	1 cut(s)	618
PspN4I	GGNNCC	3 cut(s)	186, 643, 685
PspPI	GGNCC	3 cut(s)	185, 642, 683
PspPPI	RGGWCCY	1 cut(s)	683
PsrI	GAACNNNNNNTAC	2 cut(s)	869, 901
PstI	CTGCAG	1 cut(s)	983
PsuI	RGATCY	1 cut(s)	320
RsaI	GTAC	1 cut(s)	617
RsaNI	GTAC	1 cut(s)	616
RseI	CAYNNNNRTG	3 cut(s)	611, 670, 710
SaqAI	TTAA	7 cut(s)	158, 195, 408, 627, 762, 828, 873
Sau3AI	GATC	2 cut(s)	263, 320
Sau96I	GGNCC	3 cut(s)	185, 642, 683
ScrFI	CCNGG	1 cut(s)	620
SduI	GDGCHC	3 cut(s)	232, 733, 847
SfaNI	GCATC	2 cut(s)	389, 702
SfcI	CTRYAG	2 cut(s)	579, 979
SfuI	TTCGAA	1 cut(s)	430
SinI	GGWCC	2 cut(s)	185, 683
SmiMI	CAYNNNNRTG	3 cut(s)	611, 670, 710
Sse9I	AATT	5 cut(s)	280, 375, 559, 775, 893
SseBI	AGGCCT	1 cut(s)	55
SsiI	CCGC	2 cut(s)	181, 479
SspMI	CTAG	1 cut(s)	51
StuI	AGGCCT	1 cut(s)	55
StyD4I	CCNGG	1 cut(s)	618
TaaI	ACNGT	3 cut(s)	550, 583, 760
TaiI	ACGT	1 cut(s)	873
TaqI	TCGA	2 cut(s)	430, 936
TaqII	GACCGA	1 cut(s)	274
TasI	AATT	5 cut(s)	280, 375, 559, 775, 893
TfiI	GAWTC	5 cut(s)	514, 538, 634, 959, 993
Tru1I	TTAA	7 cut(s)	158, 195, 408, 627, 762, 828, 873
Tru9I	TTAA	7 cut(s)	158, 195, 408, 627, 762, 828, 873
TscAI	CASTG	3 cut(s)	95, 232, 725
TseFI	GTSAC	1 cut(s)	37
Tsp45I	GTSAC	1 cut(s)	37
TspDTI	ATGAA	5 cut(s)	92, 386, 595, 626, 926
TspGWI	ACGGA	1 cut(s)	559
TspRI	CASTG	3 cut(s)	95, 232, 725
VneI	GTGCAC	1 cut(s)	729
VpaK11BI	GGWCC	2 cut(s)	185, 683
XapI	RAATTY	2 cut(s)	280, 775
XcmI	CCANNNNNNNNNTGG	1 cut(s)	790
XspI	CTAG	1 cut(s)	51

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.