Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0005312

Physical Location & Seq

Genomic Coordinates Reverse (-)

81464821 .. 81465625

Gene Structure 805 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022163

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGGCATTGGTTACCCATCAAATGCAGGGTTCGTTTGTGACATATCCGTCCAGGCCTTTGTCATGGAGCAAGGGGATGAAGTTGAAGTGGTATGTAACAACACTTCACATGCTTGGGAGAAGAGAGAGTTACTCTATTATAAAGCACAATATTTGTTTGAGTGTAGGGGCTTCTCCCTTGCATGGACCAAAACTTAAACCATTGAGAGTTTCAGCCTTCCAGGGCAATGCCCAGAATGATAAATCTGGAGCAAATGCGAGTATTGCATCTTCCCCTGCCATACATAATCTGTTTAAGAAATGGTTGGGAATGCTCCAAACGCAATCATCAAGTGAAGTAATAGACGGGATTCTGGGAGAAGAACCTCCTCAAAAGGTGATATCAGAAACTGAGCACGAGACTCAAAACGAGGAGCGAGATGGTATTCTAAGGATGGTTTGGTGCAGTTTTCTCAGTCTAAATGCTACAATAAAGATACCCTTGCTTATCTTGATCCCCTCGTACCTGGTAGTGAATATACTTTATGGCGCCGAAGCTTCAAAAGAGTTAACTTCTTTGTGGGTTCTCGGACCCTTCATTGCAGCTCTCTACATCAAGATCCTTCAGTGGTTGTGTGCACTCTATGTTTTCAGGTTCAAGCAGACTGAAAGTAATCAAAAACTTGCCCAATTATTACCTGGTGGCGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

230

Amino Acids

25.52

Weight (kDa)

9.34

Isoelectric Point (pI)

44.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005312)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63050 AT5G63050
fragaria_vesca	FvH4_5g05630
malus_domestica	MD06G1170900.v1.1 MD14G1176600.v1.1
prunus_persica	Prupe.5G170500_v2.0.a1 Prupe.5G170500_v2.0.a1
pyrus_communis	pycom06g15240 pycom14g14750
rosa_chinensis	RchiOBHm_Chr7g0193181
rosa_laevigata	RLG00000004289 RLG00000022163 RLG00000026387
rosa_multiflora	Rmu_ssc0000092.1_g000029
rosa_roxburghii	Rroxscaffold_2G00079190 Rroxscaffold_3G00262310 Rroxscaffold_6G00395460
rosa_rugosa	Rorug02G0253700 Rorug02G0565700 Rorug07G0008100
rosa_samantha	Rh2AG645800 Rh2BG656500 Rh2CG621600 Rh2DG669900 Rh7AG133500 Rh7BG134500 Rh7CG137400 Rh7DG135500
rosa_wichuraiana	Rw7G011410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	140
AasI	GACNNNNNNGTC	1 cut(s)	46
AccB1I	GGYRCC	1 cut(s)	527
AclWI	GGATC	2 cut(s)	487, 592
AcuI	CTGAAG	1 cut(s)	587
AcyI	GRCGYC	1 cut(s)	528
AfaI	GTAC	1 cut(s)	503
AfiI	CCNNNNNNNGG	1 cut(s)	182
AgsI	TTSAA	3 cut(s)	85, 540, 637
AjnI	CCWGG	4 cut(s)	50, 219, 504, 676
AluBI	AGCT	2 cut(s)	536, 584
AluI	AGCT	2 cut(s)	536, 584
Alw21I	GWGCWC	2 cut(s)	396, 619
Alw26I	GTCTC	1 cut(s)	392
Alw44I	GTGCAC	1 cut(s)	615
AlwI	GGATC	2 cut(s)	487, 592
AlwNI	CAGNNNCTG	1 cut(s)	389
AoxI	GGCC	1 cut(s)	53
ApaLI	GTGCAC	1 cut(s)	615
ApeKI	GCWGC	1 cut(s)	581
AspLEI	GCGC	1 cut(s)	530
AspS9I	GGNCC	2 cut(s)	185, 569
AsuHPI	GGTGA	1 cut(s)	388
AvaII	GGWCC	2 cut(s)	185, 569
BaeGI	GKGCMC	1 cut(s)	619
BanI	GGYRCC	1 cut(s)	527
BarI	GAAGNNNNNNTAC	4 cut(s)	87, 119, 253, 285
BauI	CACGAG	1 cut(s)	395
Bbv12I	GWGCWC	2 cut(s)	396, 619
BbvI	GCAGC	1 cut(s)	593
BccI	CCATC	3 cut(s)	24, 413, 427
BciT130I	CCWGG	4 cut(s)	52, 221, 506, 678
BcoDI	GTCTC	1 cut(s)	392
BfoI	RGCGCY	1 cut(s)	531
BisI	GCNGC	1 cut(s)	582
BlsI	GCNGC	1 cut(s)	583
Bme1390I	CCNGG	4 cut(s)	52, 221, 506, 678
Bme18I	GGWCC	2 cut(s)	185, 569
BmgT120I	GGNCC	2 cut(s)	185, 569
BmiI	GGNNCC	2 cut(s)	529, 571
BmrFI	CCNGG	4 cut(s)	52, 221, 506, 678
BmsI	GCATC	1 cut(s)	275
BplI	GAGNNNNNCTC	2 cut(s)	116, 148
BpmI	CTGGAG	1 cut(s)	267
BsaHI	GRCGYC	1 cut(s)	528
BsaJI	CCNNGG	1 cut(s)	220
Bsc4I	CCNNNNNNNGG	1 cut(s)	182
Bse3DI	GCAATG	2 cut(s)	232, 576
BseBI	CCWGG	4 cut(s)	52, 221, 506, 678
BseDI	CCNNGG	1 cut(s)	220
BseGI	GGATG	2 cut(s)	81, 438
BseLI	CCNNNNNNNGG	1 cut(s)	182
BseMI	GCAATG	2 cut(s)	232, 576
BseMII	CTCAG	2 cut(s)	381, 466
BseRI	GAGGAG	2 cut(s)	357, 425
BseSI	GKGCMC	1 cut(s)	619
BseXI	GCAGC	1 cut(s)	593
BsgI	GTGCAG	1 cut(s)	463
BshFI	GGCC	1 cut(s)	55
BshNI	GGYRCC	1 cut(s)	527
BsiHKAI	GWGCWC	2 cut(s)	396, 619
BslI	CCNNNNNNNGG	1 cut(s)	182
BsmAI	GTCTC	1 cut(s)	392
BsmI	GAATGC	1 cut(s)	315
BsnI	GGCC	1 cut(s)	55
Bsp1286I	GDGCHC	2 cut(s)	396, 619
Bsp143I	GATC	2 cut(s)	492, 597
BspANI	GGCC	1 cut(s)	55
BspCNI	CTCAG	2 cut(s)	382, 465
BspLI	GGNNCC	2 cut(s)	529, 571
BspPI	GGATC	2 cut(s)	487, 592
BspT107I	GGYRCC	1 cut(s)	527
BsrDI	GCAATG	2 cut(s)	232, 576
BssECI	CCNNGG	1 cut(s)	220
BssMI	GATC	2 cut(s)	492, 597
BssNI	GRCGYC	1 cut(s)	528
BssSI	CACGAG	1 cut(s)	395
Bst2BI	CACGAG	1 cut(s)	395
Bst2UI	CCWGG	4 cut(s)	52, 221, 506, 678
Bst6I	CTCTTC	1 cut(s)	115
BstACI	GRCGYC	1 cut(s)	528
BstDEI	CTNAG	3 cut(s)	390, 428, 452
BstEII	GGTNACC	1 cut(s)	10
BstF5I	GGATG	2 cut(s)	81, 438
BstH2I	RGCGCY	1 cut(s)	531
BstHHI	GCGC	1 cut(s)	530
BstKTI	GATC	2 cut(s)	495, 600
BstMAI	GTCTC	1 cut(s)	392
BstMBI	GATC	2 cut(s)	492, 597
BstMWI	GCNNNNNNNGC	2 cut(s)	263, 319
BstNI	CCWGG	4 cut(s)	52, 221, 506, 678
BstNSI	RCATGY	1 cut(s)	112
BstPI	GGTNACC	1 cut(s)	10
BstSCI	CCNGG	4 cut(s)	50, 219, 504, 676
BstSLI	GKGCMC	1 cut(s)	619
BstV1I	GCAGC	1 cut(s)	593
BstX2I	RGATCY	1 cut(s)	597
BstYI	RGATCY	1 cut(s)	597
BsuRI	GGCC	1 cut(s)	55
BtsCI	GGATG	2 cut(s)	81, 438
BtsIMutI	CAGTG	1 cut(s)	611
CaiI	CAGNNNCTG	1 cut(s)	389
CfoI	GCGC	1 cut(s)	530
Cfr13I	GGNCC	2 cut(s)	185, 569
CsiI	ACCWGGT	2 cut(s)	504, 676
Csp6I	GTAC	1 cut(s)	502
CviAII	CATG	3 cut(s)	63, 109, 182
CviJI	RGCY	5 cut(s)	55, 170, 215, 536, 584
CviKI_1	RGCY	5 cut(s)	55, 170, 215, 536, 584
CviQI	GTAC	1 cut(s)	502
DdeI	CTNAG	3 cut(s)	390, 428, 452
DinI	GGCGCC	1 cut(s)	529
DpnI	GATC	2 cut(s)	494, 599
DpnII	GATC	2 cut(s)	492, 597
DrdI	GACNNNNNNGTC	1 cut(s)	46
DseDI	GACNNNNNNGTC	1 cut(s)	46
Eam1104I	CTCTTC	1 cut(s)	115
EarI	CTCTTC	1 cut(s)	115
Eco147I	AGGCCT	1 cut(s)	55
Eco32I	GATATC	1 cut(s)	381
Eco47I	GGWCC	2 cut(s)	185, 569
Eco57I	CTGAAG	1 cut(s)	587
Eco91I	GGTNACC	1 cut(s)	10
EcoO65I	GGTNACC	1 cut(s)	10
EcoRII	CCWGG	4 cut(s)	50, 219, 504, 676
EcoRV	GATATC	1 cut(s)	381
EgeI	GGCGCC	1 cut(s)	529
EheI	GGCGCC	1 cut(s)	529
FaeI	CATG	3 cut(s)	66, 112, 185
FalI	AAGNNNNNCTT	2 cut(s)	464, 496
FatI	CATG	3 cut(s)	62, 108, 181
Fnu4HI	GCNGC	1 cut(s)	582
FokI	GGATG	2 cut(s)	88, 445
Fsp4HI	GCNGC	1 cut(s)	582
GlaI	GCGC	1 cut(s)	529
GluI	GCNGC	1 cut(s)	582
GsuI	CTGGAG	1 cut(s)	267
HaeII	RGCGCY	1 cut(s)	531
HaeIII	GGCC	1 cut(s)	55
HhaI	GCGC	1 cut(s)	530
Hin1I	GRCGYC	1 cut(s)	528
Hin1II	CATG	3 cut(s)	66, 112, 185
Hin6I	GCGC	1 cut(s)	528
HinP1I	GCGC	1 cut(s)	528
HincII	GTYRAC	1 cut(s)	549
HindII	GTYRAC	1 cut(s)	549
HindIII	AAGCTT	1 cut(s)	534
HinfI	GANTC	2 cut(s)	349, 400
HpaI	GTTAAC	1 cut(s)	549
HphI	GGTGA	1 cut(s)	388
Hpy166II	GTNNAC	2 cut(s)	549, 617
Hpy188I	TCNGA	2 cut(s)	385, 569
Hpy188III	TCNNGA	3 cut(s)	246, 490, 595
Hpy8I	GTNNAC	2 cut(s)	549, 617
HpyAV	CCTTC	3 cut(s)	226, 583, 611
HpyCH4V	TGCA	6 cut(s)	25, 181, 266, 444, 581, 617
HpyF10VI	GCNNNNNNNGC	2 cut(s)	263, 319
HpyF3I	CTNAG	3 cut(s)	390, 428, 452
Hsp92I	GRCGYC	1 cut(s)	528
Hsp92II	CATG	3 cut(s)	66, 112, 185
HspAI	GCGC	1 cut(s)	528
KasI	GGCGCC	1 cut(s)	527
KspAI	GTTAAC	1 cut(s)	549
Kzo9I	GATC	2 cut(s)	492, 597
LmnI	GCTCC	4 cut(s)	66, 248, 318, 412
Lsp1109I	GCAGC	1 cut(s)	593
LweI	GCATC	1 cut(s)	275
MabI	ACCWGGT	2 cut(s)	504, 676
MaeIII	GTNAC	4 cut(s)	10, 37, 94, 128
MalI	GATC	2 cut(s)	494, 599
MboI	GATC	2 cut(s)	492, 597
MboII	GAAGA	3 cut(s)	132, 261, 371
MflI	RGATCY	1 cut(s)	597
MhlI	GDGCHC	2 cut(s)	396, 619
MluCI	AATT	1 cut(s)	668
Mly113I	GGCGCC	1 cut(s)	528
MlyI	GAGTC	1 cut(s)	394
MnlI	CCTC	4 cut(s)	375, 378, 403, 508
MseI	TTAA	3 cut(s)	195, 294, 548
MspR9I	CCNGG	4 cut(s)	52, 221, 506, 678
Mva1269I	GAATGC	1 cut(s)	315
MvaI	CCWGG	4 cut(s)	52, 221, 506, 678
MwoI	GCNNNNNNNGC	2 cut(s)	263, 319
NarI	GGCGCC	1 cut(s)	528
NdeII	GATC	2 cut(s)	492, 597
NlaIII	CATG	3 cut(s)	66, 112, 185
NlaIV	GGNNCC	2 cut(s)	529, 571
NmuCI	GTSAC	1 cut(s)	37
NspI	RCATGY	1 cut(s)	112
PceI	AGGCCT	1 cut(s)	55
PctI	GAATGC	1 cut(s)	315
PfeI	GAWTC	1 cut(s)	349
PkrI	GCNGC	1 cut(s)	583
PleI	GAGTC	1 cut(s)	394
PluTI	GGCGCC	1 cut(s)	531
PpsI	GAGTC	1 cut(s)	394
PsiI	TTATAA	1 cut(s)	140
Psp6I	CCWGG	4 cut(s)	50, 219, 504, 676
PspEI	GGTNACC	1 cut(s)	10
PspGI	CCWGG	4 cut(s)	50, 219, 504, 676
PspN4I	GGNNCC	2 cut(s)	529, 571
PspPI	GGNCC	2 cut(s)	185, 569
PstNI	CAGNNNCTG	1 cut(s)	389
PsuI	RGATCY	1 cut(s)	597
RsaI	GTAC	1 cut(s)	503
RsaNI	GTAC	1 cut(s)	502
SaqAI	TTAA	3 cut(s)	195, 294, 548
SatI	GCNGC	1 cut(s)	582
Sau3AI	GATC	2 cut(s)	492, 597
Sau96I	GGNCC	2 cut(s)	185, 569
SchI	GAGTC	1 cut(s)	394
ScrFI	CCNGG	4 cut(s)	52, 221, 506, 678
SduI	GDGCHC	2 cut(s)	396, 619
SetI	ASST	7 cut(s)	367, 378, 507, 538, 586, 635, 679
SexAI	ACCWGGT	2 cut(s)	504, 676
SfaNI	GCATC	1 cut(s)	275
SfoI	GGCGCC	1 cut(s)	529
SinI	GGWCC	2 cut(s)	185, 569
Sse9I	AATT	1 cut(s)	668
SseBI	AGGCCT	1 cut(s)	55
SspDI	GGCGCC	1 cut(s)	527
SspI	AATATT	1 cut(s)	151
StuI	AGGCCT	1 cut(s)	55
StyD4I	CCNGG	4 cut(s)	50, 219, 504, 676
TasI	AATT	1 cut(s)	668
TfiI	GAWTC	1 cut(s)	349
Tru1I	TTAA	3 cut(s)	195, 294, 548
Tru9I	TTAA	3 cut(s)	195, 294, 548
TscAI	CASTG	1 cut(s)	611
TseFI	GTSAC	1 cut(s)	37
TseI	GCWGC	1 cut(s)	581
Tsp45I	GTSAC	1 cut(s)	37
TspDTI	ATGAA	2 cut(s)	92, 565
TspGWI	ACGGA	1 cut(s)	36
TspRI	CASTG	1 cut(s)	611
VneI	GTGCAC	1 cut(s)	615
VpaK11BI	GGWCC	2 cut(s)	185, 569
XceI	RCATGY	1 cut(s)	112
XcmI	CCANNNNNNNNNTGG	1 cut(s)	674

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.