Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0005312

Physical Location & Seq

Genomic Coordinates Forward (+)

14600174 .. 14602357

Gene Structure 2184 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G170500.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGGCATTGGTAACCCATCAAATGCAGGGTTCTTATGTGACATATCCCTCTAGGCCATTGTCATGGAGCAAAGGGCTGAAGTTGAAGCAGTATGTAACAACACATCACATGGTTGGGAGGACAGACAATTGCATTATGTTAAAGCGCAATATTTGTTTAAGTGTAGGGGCTTCTCTCATGCGGGGATCAAAAGTCAAACCTTTGAGAGTTTCAGCCTTCAAGGGAAGTGCCCAGAATGATAAATCTGGAGGTAGAACAAGTGGATCAAAGCTTCCCAAGAATTCTGTCAAACTAAAAGAGAATGAGGATACCCTAACGGGATCTCCTCAGGAAAATGATATGCCTCTTTCCTATGCCTCTGAAGCAAATGAGAGCATTGCTTCTTCCCCTGTCATTCATAAATTATTTAAGAAATGGCTTAGAATGCTCCGAACACAATCATCATGTGAAGTAGTAGATGGGATTTTGGAGGAGGAACCGCCTCCAAAGGAGATATCAGAAACTGAGCACGATACTCAGAACAAGGAAAGAGATGGGATTCTAAGGATGGTTTGGTCCAATTTTCTGGGTCTAAATGCTACAATAAAGATACCCTTACTTATATTCATCCCCGGGTACCTGGCAGTTAATATTATTTATGGGGCTGAAGTTTCAAAGGAGTTGACTCCTTTGTGGGTTTTGGGACCCCTCATTGTAGCTCTTTACATCAAGATGCTTCAGTGGTTGTGTGCACTCTATGTTTTCAGCTTCAAGCAGACTGTTCAAGTAATCAAGAACTTACCCACTTACTACATGGTGGCCTATAGATACATTGCACAAGGGAAGCTTAAAGAGGACATACGGGCTCGTTTCTGGCAACCTGTACTGAACATTAAGAATTTAGACTACAAGAAACTATCCAGAAGAAAGCTGAAAGGATTGCAAGAGTTAATAGTGGAGAAGTACCTTGATTTTATAGAATCAATATGGCCATATTATTGCAGAACAATCAGATTCTTAAAGAGGGCTAATCTCATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

340

Amino Acids

38.86

Weight (kDa)

9.66

Isoelectric Point (pI)

40.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005312)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63050 AT5G63050
fragaria_vesca	FvH4_5g05630
malus_domestica	MD06G1170900.v1.1 MD14G1176600.v1.1
prunus_persica	Prupe.5G170500_v2.0.a1 Prupe.5G170500_v2.0.a1
pyrus_communis	pycom06g15240 pycom14g14750
rosa_chinensis	RchiOBHm_Chr7g0193181
rosa_laevigata	RLG00000004289 RLG00000022163 RLG00000026387
rosa_multiflora	Rmu_ssc0000092.1_g000029
rosa_roxburghii	Rroxscaffold_2G00079190 Rroxscaffold_3G00262310 Rroxscaffold_6G00395460
rosa_rugosa	Rorug02G0253700 Rorug02G0565700 Rorug07G0008100
rosa_samantha	Rh2AG645800 Rh2BG656500 Rh2CG621600 Rh2DG669900 Rh7AG133500 Rh7BG134500 Rh7CG137400 Rh7DG135500
rosa_wichuraiana	Rw7G011410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	615
AccB1I	GGYRCC	1 cut(s)	615
AciI	CCGC	2 cut(s)	181, 479
AclWI	GGATC	3 cut(s)	193, 271, 328
AcoI	YGGCCR	1 cut(s)	968
AcsI	RAATTY	2 cut(s)	280, 877
AcuI	CTGAAG	4 cut(s)	98, 381, 666, 701
AfaI	GTAC	3 cut(s)	617, 864, 944
AgsI	TTSAA	5 cut(s)	85, 220, 654, 751, 764
AjnI	CCWGG	1 cut(s)	618
AluBI	AGCT	5 cut(s)	271, 698, 747, 826, 910
AluI	AGCT	5 cut(s)	271, 698, 747, 826, 910
Alw21I	GWGCWC	2 cut(s)	510, 733
Alw44I	GTGCAC	1 cut(s)	729
AlwI	GGATC	3 cut(s)	193, 271, 328
AlwNI	CAGNNNCTG	1 cut(s)	503
Ama87I	CYCGRG	1 cut(s)	611
AoxI	GGCC	3 cut(s)	53, 798, 968
ApaLI	GTGCAC	1 cut(s)	729
ApoI	RAATTY	2 cut(s)	280, 877
Asp718I	GGTACC	1 cut(s)	615
AspLEI	GCGC	1 cut(s)	147
AspS9I	GGNCC	2 cut(s)	555, 683
AsuC2I	CCSGG	2 cut(s)	612, 613
AvaI	CYCGRG	1 cut(s)	611
AvaII	GGWCC	2 cut(s)	555, 683
AxyI	CCTNAGG	1 cut(s)	327
BaeGI	GKGCMC	2 cut(s)	232, 733
BalI	TGGCCA	1 cut(s)	970
BanI	GGYRCC	1 cut(s)	615
BanII	GRGCYC	1 cut(s)	847
Bbv12I	GWGCWC	2 cut(s)	510, 733
BccI	CCATC	4 cut(s)	24, 452, 527, 541
BciT130I	CCWGG	1 cut(s)	620
BciVI	GTATCC	1 cut(s)	301
BcnI	CCSGG	2 cut(s)	612, 613
BfaI	CTAG	2 cut(s)	51, 1018
BfmI	CTRYAG	1 cut(s)	802
BfuI	GTATCC	1 cut(s)	301
Bme1390I	CCNGG	3 cut(s)	612, 613, 620
Bme18I	GGWCC	2 cut(s)	555, 683
BmeT110I	CYCGRG	1 cut(s)	611
BmgT120I	GGNCC	2 cut(s)	555, 683
BmiI	GGNNCC	4 cut(s)	477, 617, 684, 685
BmrFI	CCNGG	3 cut(s)	612, 613, 620
BmsI	GCATC	1 cut(s)	702
BpmI	CTGGAG	1 cut(s)	267
BpuMI	CCSGG	2 cut(s)	612, 613
BsaJI	CCNNGG	2 cut(s)	610, 611
BsaXI	ACNNNNNCTCC	2 cut(s)	307, 337
Bse21I	CCTNAGG	1 cut(s)	327
Bse3DI	GCAATG	2 cut(s)	375, 810
BseBI	CCWGG	1 cut(s)	620
BseDI	CCNNGG	2 cut(s)	610, 611
BseGI	GGATG	2 cut(s)	552, 606
BseMI	GCAATG	2 cut(s)	375, 810
BseMII	CTCAG	3 cut(s)	341, 495, 530
BseRI	GAGGAG	2 cut(s)	315, 485
BseSI	GKGCMC	2 cut(s)	232, 733
BshFI	GGCC	3 cut(s)	55, 800, 970
BshNI	GGYRCC	1 cut(s)	615
BsiHKAI	GWGCWC	2 cut(s)	510, 733
BsiHKCI	CYCGRG	1 cut(s)	611
BsiSI	CCGG	1 cut(s)	612
BslFI	GGGAC	1 cut(s)	696
BsmFI	GGGAC	1 cut(s)	696
BsmI	GAATGC	1 cut(s)	429
BsnI	GGCC	3 cut(s)	55, 800, 970
BsoBI	CYCGRG	1 cut(s)	611
Bsp1286I	GDGCHC	4 cut(s)	232, 510, 733, 847
Bsp143I	GATC	3 cut(s)	185, 263, 320
BspACI	CCGC	2 cut(s)	181, 479
BspANI	GGCC	3 cut(s)	55, 800, 970
BspCNI	CTCAG	3 cut(s)	340, 496, 529
BspLI	GGNNCC	4 cut(s)	477, 617, 684, 685
BspPI	GGATC	3 cut(s)	193, 271, 328
BspT107I	GGYRCC	1 cut(s)	615
BsrDI	GCAATG	2 cut(s)	375, 810
BssECI	CCNNGG	2 cut(s)	610, 611
BssMI	GATC	3 cut(s)	185, 263, 320
Bst2UI	CCWGG	1 cut(s)	620
Bst4CI	ACNGT	1 cut(s)	760
BstDEI	CTNAG	5 cut(s)	327, 419, 504, 516, 542
BstEII	GGTNACC	1 cut(s)	10
BstF5I	GGATG	2 cut(s)	552, 606
BstHHI	GCGC	1 cut(s)	147
BstKTI	GATC	3 cut(s)	188, 266, 323
BstMBI	GATC	3 cut(s)	185, 263, 320
BstMWI	GCNNNNNNNGC	2 cut(s)	362, 424
BstNI	CCWGG	1 cut(s)	620
BstPI	GGTNACC	1 cut(s)	10
BstSCI	CCNGG	3 cut(s)	610, 611, 618
BstSFI	CTRYAG	1 cut(s)	802
BstSLI	GKGCMC	2 cut(s)	232, 733
BstX2I	RGATCY	1 cut(s)	320
BstXI	CCANNNNNNTGG	2 cut(s)	63, 565
BstYI	RGATCY	1 cut(s)	320
Bsu36I	CCTNAGG	1 cut(s)	327
BsuI	GTATCC	1 cut(s)	301
BsuRI	GGCC	3 cut(s)	55, 800, 970
BtsCI	GGATG	2 cut(s)	552, 606
BtsIMutI	CAGTG	1 cut(s)	725
CaiI	CAGNNNCTG	1 cut(s)	503
CfoI	GCGC	1 cut(s)	147
Cfr13I	GGNCC	2 cut(s)	555, 683
Cfr9I	CCCGGG	1 cut(s)	611
Csp6I	GTAC	3 cut(s)	616, 863, 943
CviAII	CATG	5 cut(s)	63, 109, 178, 444, 793
CviQI	GTAC	3 cut(s)	616, 863, 943
DdeI	CTNAG	5 cut(s)	327, 419, 504, 516, 542
DpnI	GATC	3 cut(s)	187, 265, 322
DpnII	GATC	3 cut(s)	185, 263, 320
EaeI	YGGCCR	1 cut(s)	968
Eco24I	GRGCYC	1 cut(s)	847
Eco32I	GATATC	1 cut(s)	495
Eco47I	GGWCC	2 cut(s)	555, 683
Eco57I	CTGAAG	4 cut(s)	98, 381, 666, 701
Eco81I	CCTNAGG	1 cut(s)	327
Eco88I	CYCGRG	1 cut(s)	611
Eco91I	GGTNACC	1 cut(s)	10
EcoO109I	RGGNCCY	1 cut(s)	683
EcoO65I	GGTNACC	1 cut(s)	10
EcoRI	GAATTC	1 cut(s)	280
EcoRII	CCWGG	1 cut(s)	618
EcoRV	GATATC	1 cut(s)	495
EcoT38I	GRGCYC	1 cut(s)	847
FaeI	CATG	5 cut(s)	66, 112, 181, 447, 796
FalI	AAGNNNNNCTT	4 cut(s)	578, 610, 810, 842
FaqI	GGGAC	1 cut(s)	696
FatI	CATG	5 cut(s)	62, 108, 177, 443, 792
FauI	CCCGC	1 cut(s)	174
FokI	GGATG	2 cut(s)	559, 593
FriOI	GRGCYC	1 cut(s)	847
FspBI	CTAG	2 cut(s)	51, 1018
GlaI	GCGC	1 cut(s)	146
GsuI	CTGGAG	1 cut(s)	267
HaeIII	GGCC	3 cut(s)	55, 800, 970
HapII	CCGG	1 cut(s)	612
HhaI	GCGC	1 cut(s)	147
Hin1II	CATG	5 cut(s)	66, 112, 181, 447, 796
Hin6I	GCGC	1 cut(s)	145
HinP1I	GCGC	1 cut(s)	145
HincII	GTYRAC	1 cut(s)	663
HindII	GTYRAC	1 cut(s)	663
HindIII	AAGCTT	2 cut(s)	269, 824
HinfI	GANTC	4 cut(s)	538, 664, 959, 993
HpaII	CCGG	1 cut(s)	612
Hpy166II	GTNNAC	2 cut(s)	663, 731
Hpy188I	TCNGA	5 cut(s)	361, 431, 499, 519, 992
Hpy188III	TCNNGA	5 cut(s)	246, 329, 709, 772, 900
Hpy8I	GTNNAC	2 cut(s)	663, 731
HpyAV	CCTTC	1 cut(s)	226
HpyCH4III	ACNGT	1 cut(s)	760
HpyCH4V	TGCA	6 cut(s)	25, 132, 731, 815, 922, 981
HpyF10VI	GCNNNNNNNGC	2 cut(s)	362, 424
HpyF3I	CTNAG	5 cut(s)	327, 419, 504, 516, 542
Hsp92II	CATG	5 cut(s)	66, 112, 181, 447, 796
HspAI	GCGC	1 cut(s)	145
KflI	GGGWCCC	1 cut(s)	683
KpnI	GGTACC	1 cut(s)	619
Kzo9I	GATC	3 cut(s)	185, 263, 320
LmnI	GCTCC	2 cut(s)	66, 432
LweI	GCATC	1 cut(s)	702
MaeI	CTAG	2 cut(s)	51, 1018
MaeIII	GTNAC	3 cut(s)	10, 37, 94
MalI	GATC	3 cut(s)	187, 265, 322
MboI	GATC	3 cut(s)	185, 263, 320
MboII	GAAGA	2 cut(s)	375, 915
MfeI	CAATTG	1 cut(s)	127
MflI	RGATCY	1 cut(s)	320
MhlI	GDGCHC	4 cut(s)	232, 510, 733, 847
MlsI	TGGCCA	1 cut(s)	970
MluCI	AATT	5 cut(s)	127, 280, 401, 559, 877
MluNI	TGGCCA	1 cut(s)	970
MlyI	GAGTC	1 cut(s)	658
Mox20I	TGGCCA	1 cut(s)	970
MscI	TGGCCA	1 cut(s)	970
MseI	TTAA	8 cut(s)	140, 158, 408, 627, 828, 873, 929, 998
MslI	CAYNNNNRTG	2 cut(s)	61, 710
Msp20I	TGGCCA	1 cut(s)	970
MspI	CCGG	1 cut(s)	612
MspR9I	CCNGG	3 cut(s)	612, 613, 620
MunI	CAATTG	1 cut(s)	127
Mva1269I	GAATGC	1 cut(s)	429
MvaI	CCWGG	1 cut(s)	620
MwoI	GCNNNNNNNGC	2 cut(s)	362, 424
NciI	CCSGG	2 cut(s)	612, 613
NdeII	GATC	3 cut(s)	185, 263, 320
NlaIII	CATG	5 cut(s)	66, 112, 181, 447, 796
NlaIV	GGNNCC	4 cut(s)	477, 617, 684, 685
NmuCI	GTSAC	1 cut(s)	37
PctI	GAATGC	1 cut(s)	429
PfeI	GAWTC	3 cut(s)	538, 959, 993
PleI	GAGTC	1 cut(s)	658
PpsI	GAGTC	1 cut(s)	658
PpuMI	RGGWCCY	1 cut(s)	683
Psp5II	RGGWCCY	1 cut(s)	683
Psp6I	CCWGG	1 cut(s)	618
PspEI	GGTNACC	1 cut(s)	10
PspGI	CCWGG	1 cut(s)	618
PspN4I	GGNNCC	4 cut(s)	477, 617, 684, 685
PspPI	GGNCC	2 cut(s)	555, 683
PspPPI	RGGWCCY	1 cut(s)	683
PstNI	CAGNNNCTG	1 cut(s)	503
PsuI	RGATCY	1 cut(s)	320
RsaI	GTAC	3 cut(s)	617, 864, 944
RsaNI	GTAC	3 cut(s)	616, 863, 943
RseI	CAYNNNNRTG	2 cut(s)	61, 710
SaqAI	TTAA	8 cut(s)	140, 158, 408, 627, 828, 873, 929, 998
Sau3AI	GATC	3 cut(s)	185, 263, 320
Sau96I	GGNCC	2 cut(s)	555, 683
SchI	GAGTC	1 cut(s)	658
ScrFI	CCNGG	3 cut(s)	612, 613, 620
SduI	GDGCHC	4 cut(s)	232, 510, 733, 847
SfaNI	GCATC	1 cut(s)	702
SfcI	CTRYAG	1 cut(s)	802
SinI	GGWCC	2 cut(s)	555, 683
SmaI	CCCGGG	1 cut(s)	613
SmiMI	CAYNNNNRTG	2 cut(s)	61, 710
Sse9I	AATT	5 cut(s)	127, 280, 401, 559, 877
SsiI	CCGC	2 cut(s)	181, 479
SspI	AATATT	2 cut(s)	151, 631
SspMI	CTAG	2 cut(s)	51, 1018
StyD4I	CCNGG	3 cut(s)	610, 611, 618
TaaI	ACNGT	1 cut(s)	760
TasI	AATT	5 cut(s)	127, 280, 401, 559, 877
TatI	WGTACW	1 cut(s)	862
TfiI	GAWTC	3 cut(s)	538, 959, 993
Tru1I	TTAA	8 cut(s)	140, 158, 408, 627, 828, 873, 929, 998
Tru9I	TTAA	8 cut(s)	140, 158, 408, 627, 828, 873, 929, 998
TscAI	CASTG	1 cut(s)	725
TseFI	GTSAC	1 cut(s)	37
Tsp45I	GTSAC	1 cut(s)	37
TspDTI	ATGAA	2 cut(s)	386, 595
TspMI	CCCGGG	1 cut(s)	611
TspRI	CASTG	1 cut(s)	725
VneI	GTGCAC	1 cut(s)	729
VpaK11BI	GGWCC	2 cut(s)	555, 683
XapI	RAATTY	2 cut(s)	280, 877
XcmI	CCANNNNNNNNNTGG	1 cut(s)	790
XmaI	CCCGGG	1 cut(s)	611
XspI	CTAG	2 cut(s)	51, 1018

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.