Rroxscaffold_2G00079190

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0005312
Physical Location & Seq
Forward (+)
2236886 .. 2237754
869 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00079190.1

Sequence Viewer

Length: 504 bp
ATGAGGATACCAAAGCGGGTTCTCCCCAGGCAAAATGATATCCCTATTTCCTATGCCTCTGAAGCAAATGAGAGTATTGCATCTTCCCCTGCCATACATAATCTGTTTAAGAAGTGGTTGGGAATGCTCCAAACGCAATCATCAGGTGAAGTAGTAGACGGGATTTTGGGAGAAGAACCTCCTCAAAAGGTGATATCAGAAACTGAGCACGAGACTCAAAACGAGGAGAGAGATGGTATTCTAAGGATGCTTTGGTGCAGTTTTCTCAGCCTAAATGCTACGATAAAGATACCCTTGCTTATCTTCATCCCCTCCTACCTGAAGAGAAGTCCTTTGTTAGATCAATCGGCTGAAGTTGGCGTTGCTCTGATGATGGTTGAAAAGGCTTTGAGTTCTTTCAAGGAGCTAGCCAGTCCCATTTTAGATTGGGTTTCATCTTGCCGTCTAGCTGGTGGTCAACGATCACGAAAAGCAGATTTGTCCGGGTTTTCTAATTTTTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

167

Amino Acids

18.57

Weight (kDa)

6.14

Isoelectric Point (pI)

57.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 156
AciI CCGC 1 cut(s) 16
AcuI CTGAAG 3 cut(s) 81, 341, 372
AgsI TTSAA 2 cut(s) 380, 400
AjnI CCWGG 1 cut(s) 26
AluBI AGCT 2 cut(s) 406, 449
AluI AGCT 2 cut(s) 406, 449
Alw21I GWGCWC 1 cut(s) 210
Alw26I GTCTC 1 cut(s) 206
AlwNI CAGNNNCTG 1 cut(s) 203
AsuC2I CCSGG 1 cut(s) 484
AsuHPI GGTGA 2 cut(s) 158, 202
AsuNHI GCTAGC 1 cut(s) 406
BarI GAAGNNNNNNTAC 2 cut(s) 67, 99
BauI CACGAG 1 cut(s) 209
Bbv12I GWGCWC 1 cut(s) 210
BccI CCATC 2 cut(s) 227, 367
BceAI ACGGC 1 cut(s) 426
BciT130I CCWGG 1 cut(s) 28
BcnI CCSGG 1 cut(s) 484
BcoDI GTCTC 1 cut(s) 206
BfaI CTAG 2 cut(s) 407, 446
Bme1390I CCNGG 2 cut(s) 28, 484
BmrFI CCNGG 2 cut(s) 28, 484
BmsI GCATC 2 cut(s) 89, 237
BmtI GCTAGC 1 cut(s) 410
BpuMI CCSGG 1 cut(s) 484
BsaJI CCNNGG 1 cut(s) 26
Bse1I ACTGG 1 cut(s) 411
BseBI CCWGG 1 cut(s) 28
BseDI CCNNGG 1 cut(s) 26
BseGI GGATG 2 cut(s) 252, 306
BseMII CTCAG 2 cut(s) 195, 280
BseNI ACTGG 1 cut(s) 411
BseRI GAGGAG 2 cut(s) 171, 239
BsgI GTGCAG 1 cut(s) 277
BsiHKAI GWGCWC 1 cut(s) 210
BsiSI CCGG 1 cut(s) 483
BslFI GGGAC 1 cut(s) 399
BsmAI GTCTC 1 cut(s) 206
BsmFI GGGAC 1 cut(s) 399
BsmI GAATGC 1 cut(s) 129
Bsp1286I GDGCHC 1 cut(s) 210
Bsp143I GATC 2 cut(s) 340, 461
BspACI CCGC 1 cut(s) 16
BspCNI CTCAG 2 cut(s) 196, 279
BspOI GCTAGC 1 cut(s) 410
BsrI ACTGG 1 cut(s) 411
BssECI CCNNGG 1 cut(s) 26
BssMI GATC 2 cut(s) 340, 461
BssSI CACGAG 1 cut(s) 209
Bst2BI CACGAG 1 cut(s) 209
Bst2UI CCWGG 1 cut(s) 28
Bst6I CTCTTC 1 cut(s) 317
BstC8I GCNNGC 1 cut(s) 408
BstDEI CTNAG 3 cut(s) 204, 242, 266
BstF5I GGATG 2 cut(s) 252, 306
BstKTI GATC 2 cut(s) 343, 464
BstMAI GTCTC 1 cut(s) 206
BstMBI GATC 2 cut(s) 340, 461
BstMWI GCNNNNNNNGC 2 cut(s) 62, 133
BstNI CCWGG 1 cut(s) 28
BstSCI CCNGG 2 cut(s) 26, 482
BtsCI GGATG 2 cut(s) 252, 306
Cac8I GCNNGC 1 cut(s) 408
CaiI CAGNNNCTG 1 cut(s) 203
CviJI RGCY 6 cut(s) 270, 350, 386, 406, 410, 449
CviKI_1 RGCY 6 cut(s) 270, 350, 386, 406, 410, 449
DdeI CTNAG 3 cut(s) 204, 242, 266
DpnI GATC 2 cut(s) 342, 463
DpnII GATC 2 cut(s) 340, 461
Eam1104I CTCTTC 1 cut(s) 317
EarI CTCTTC 1 cut(s) 317
Eco32I GATATC 2 cut(s) 40, 195
Eco57I CTGAAG 3 cut(s) 81, 341, 372
EcoRII CCWGG 1 cut(s) 26
EcoRV GATATC 2 cut(s) 40, 195
FaiI YATR 4 cut(s) 54, 95, 99, 502
FalI AAGNNNNNCTT 2 cut(s) 278, 310
FaqI GGGAC 1 cut(s) 399
FauI CCCGC 1 cut(s) 9
FblI GTMKAC 1 cut(s) 156
FokI GGATG 2 cut(s) 259, 293
FspBI CTAG 2 cut(s) 407, 446
HapII CCGG 1 cut(s) 483
HincII GTYRAC 1 cut(s) 458
HindII GTYRAC 1 cut(s) 458
HinfI GANTC 1 cut(s) 214
HpaII CCGG 1 cut(s) 483
HphI GGTGA 2 cut(s) 158, 202
Hpy166II GTNNAC 2 cut(s) 157, 458
Hpy188I TCNGA 3 cut(s) 61, 199, 369
Hpy188III TCNNGA 1 cut(s) 465
Hpy8I GTNNAC 2 cut(s) 157, 458
HpyCH4V TGCA 2 cut(s) 80, 258
HpyF10VI GCNNNNNNNGC 2 cut(s) 62, 133
HpyF3I CTNAG 3 cut(s) 204, 242, 266
Kzo9I GATC 2 cut(s) 340, 461
LmnI GCTCC 2 cut(s) 132, 403
LpnPI CCDG 8 cut(s) 13, 40, 102, 129, 332, 424, 435, 496
LweI GCATC 2 cut(s) 89, 237
MaeI CTAG 2 cut(s) 407, 446
MalI GATC 2 cut(s) 342, 463
MboI GATC 2 cut(s) 340, 461
MboII GAAGA 4 cut(s) 75, 185, 295, 334
MhlI GDGCHC 1 cut(s) 210
MluCI AATT 1 cut(s) 493
MlyI GAGTC 1 cut(s) 208
MnlI CCTC 5 cut(s) 67, 189, 192, 217, 322
MseI TTAA 1 cut(s) 108
MspI CCGG 1 cut(s) 483
MspR9I CCNGG 2 cut(s) 28, 484
Mva1269I GAATGC 1 cut(s) 129
MvaI CCWGG 1 cut(s) 28
MwoI GCNNNNNNNGC 2 cut(s) 62, 133
NciI CCSGG 1 cut(s) 484
NdeII GATC 2 cut(s) 340, 461
NheI GCTAGC 1 cut(s) 406
PctI GAATGC 1 cut(s) 129
PleI GAGTC 1 cut(s) 208
PpsI GAGTC 1 cut(s) 208
Psp6I CCWGG 1 cut(s) 26
PspGI CCWGG 1 cut(s) 26
PstNI CAGNNNCTG 1 cut(s) 203
SaqAI TTAA 1 cut(s) 108
Sau3AI GATC 2 cut(s) 340, 461
SchI GAGTC 1 cut(s) 208
ScrFI CCNGG 2 cut(s) 28, 484
SduI GDGCHC 1 cut(s) 210
SetI ASST 6 cut(s) 148, 181, 192, 321, 408, 451
SfaNI GCATC 2 cut(s) 89, 237
Sse9I AATT 1 cut(s) 493
SsiI CCGC 1 cut(s) 16
SspMI CTAG 2 cut(s) 407, 446
StyD4I CCNGG 2 cut(s) 26, 482
TasI AATT 1 cut(s) 493
Tru1I TTAA 1 cut(s) 108
Tru9I TTAA 1 cut(s) 108
TspDTI ATGAA 2 cut(s) 295, 423
XmiI GTMKAC 1 cut(s) 156
XspI CTAG 2 cut(s) 407, 446
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.