Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0005312

Physical Location & Seq

Genomic Coordinates Reverse (-)

2698601 .. 2701515

Gene Structure 2915 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026387

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGTCCAAAGCTGGTGATATGCCGACATCAACGTCCTCCGCCCCAAGGAGTACTGGGACTATGAGTCCTTCACCGTCTACTGGGAGGTTGAGAGTATACAATGTTGTAGAAGCTCATGACAGGTTAGTTGGATTCTTTCATTTTGGCTTTCAATCTGAACTTGAATCTGTTAGGGTTCTGTTTTCTGAGCAGAAATTGTTGAGCTTTTTGGTTTTTCATGAAACAGAGGAAAGGTTCGTTTGTGACATATCTGTCCAGGCATTTGTCATGGAGCAAGGGGATGAAGTTGAACCGGGCAATGCCCAGAATGATAAATCTGGAGGTAGAAAAGGTGGATCAAAGCTTCCTAAGAATTTAGTCAAACTAAAAGAGAATGAGGATACCAAAGAGGGATCTCCCCAGGCAAATGATATCCCTATTTCCTATGCCTCTGAAGCAAATGAGAGTATTGCATCTTCCCCTGCCATACATGGAGTTTATTCTGTGAGGCTAATTGCATATGTCCCTGGATATCATACCGGTAATAACATGAAAAAGTGGGGACATATGAAACTACATACTGTTCTCCAGGAGTGTACTTTTGATAAAGAGTTTCGGAAATCTCCTCTAGCTTGTCAGTTCCCTACTAATGTTACTGCATGGATCTGTCAAACATTAGTCACCTCAAGTCTACTAAAGGCTGTTAGTGTTGGCTCTTTCTCTGGCAATACTGTTCCAACGACCCTTGAAAATCTTGTTGCTCTTGATTACATGTTTCTATTATCAATCATTTTAACCCTAGCAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

263

Amino Acids

28.73

Weight (kDa)

5.99

Isoelectric Point (pI)

45.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005312)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63050 AT5G63050
fragaria_vesca	FvH4_5g05630
malus_domestica	MD06G1170900.v1.1 MD14G1176600.v1.1
prunus_persica	Prupe.5G170500_v2.0.a1 Prupe.5G170500_v2.0.a1
pyrus_communis	pycom06g15240 pycom14g14750
rosa_chinensis	RchiOBHm_Chr7g0193181
rosa_laevigata	RLG00000004289 RLG00000022163 RLG00000026387
rosa_multiflora	Rmu_ssc0000092.1_g000029
rosa_roxburghii	Rroxscaffold_2G00079190 Rroxscaffold_3G00262310 Rroxscaffold_6G00395460
rosa_rugosa	Rorug02G0253700 Rorug02G0565700 Rorug07G0008100
rosa_samantha	Rh2AG645800 Rh2BG656500 Rh2CG621600 Rh2DG669900 Rh7AG133500 Rh7BG134500 Rh7CG137400 Rh7DG135500
rosa_wichuraiana	Rw7G011410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	31, 251
AccI	GTMKAC	3 cut(s)	77, 96, 670
AciI	CCGC	1 cut(s)	39
AclWI	GGATC	3 cut(s)	343, 400, 650
AcsI	RAATTY	1 cut(s)	352
AcuI	CTGAAG	1 cut(s)	453
AfaI	GTAC	2 cut(s)	52, 577
AfiI	CCNNNNNNNGG	2 cut(s)	45, 80
AflIII	ACRYGT	1 cut(s)	750
AgeI	ACCGGT	1 cut(s)	518
AgsI	TTSAA	4 cut(s)	152, 164, 290, 728
AhdI	GACNNNNNGTC	1 cut(s)	63
AjnI	CCWGG	4 cut(s)	255, 399, 505, 567
AluBI	AGCT	5 cut(s)	11, 113, 204, 343, 611
AluI	AGCT	5 cut(s)	11, 113, 204, 343, 611
AlwI	GGATC	3 cut(s)	343, 400, 650
ApoI	RAATTY	1 cut(s)	352
AsiGI	ACCGGT	1 cut(s)	518
AsuC2I	CCSGG	1 cut(s)	294
AsuHPI	GGTGA	3 cut(s)	26, 63, 652
BarI	GAAGNNNNNNTAC	2 cut(s)	439, 471
BciT130I	CCWGG	4 cut(s)	257, 401, 507, 569
BciVI	GTATCC	1 cut(s)	373
BcnI	CCSGG	1 cut(s)	294
BfaI	CTAG	2 cut(s)	608, 779
BfuI	GTATCC	1 cut(s)	373
BmcAI	AGTACT	1 cut(s)	52
Bme1390I	CCNGG	5 cut(s)	257, 294, 401, 507, 569
BmeRI	GACNNNNNGTC	1 cut(s)	63
BmrFI	CCNGG	5 cut(s)	257, 294, 401, 507, 569
BmrI	ACTGGG	2 cut(s)	63, 90
BmsI	GCATC	1 cut(s)	461
BmuI	ACTGGG	2 cut(s)	63, 90
BpmI	CTGGAG	2 cut(s)	339, 551
BpuEI	CTTGAG	1 cut(s)	649
BpuMI	CCSGG	1 cut(s)	294
BsaJI	CCNNGG	3 cut(s)	44, 399, 505
BsaWI	WCCGGW	1 cut(s)	518
Bsc4I	CCNNNNNNNGG	2 cut(s)	45, 80
Bse118I	RCCGGY	1 cut(s)	518
Bse1I	ACTGG	2 cut(s)	58, 85
Bse3DI	GCAATG	1 cut(s)	304
BseBI	CCWGG	4 cut(s)	257, 401, 507, 569
BseDI	CCNNGG	3 cut(s)	44, 399, 505
BseGI	GGATG	1 cut(s)	286
BseLI	CCNNNNNNNGG	2 cut(s)	45, 80
BseMI	GCAATG	1 cut(s)	304
BseMII	CTCAG	1 cut(s)	177
BseNI	ACTGG	2 cut(s)	58, 85
BseRI	GAGGAG	1 cut(s)	594
BshTI	ACCGGT	1 cut(s)	518
BsiSI	CCGG	2 cut(s)	293, 519
BslFI	GGGAC	3 cut(s)	70, 488, 555
BslI	CCNNNNNNNGG	2 cut(s)	45, 80
BsmFI	GGGAC	3 cut(s)	70, 488, 555
Bsp143I	GATC	3 cut(s)	335, 392, 642
BspACI	CCGC	1 cut(s)	39
BspCNI	CTCAG	1 cut(s)	178
BspHI	TCATGA	2 cut(s)	115, 217
BspPI	GGATC	3 cut(s)	343, 400, 650
BsrDI	GCAATG	1 cut(s)	304
BsrFI	RCCGGY	1 cut(s)	518
BsrI	ACTGG	2 cut(s)	58, 85
BssAI	RCCGGY	1 cut(s)	518
BssECI	CCNNGG	3 cut(s)	44, 399, 505
BssMI	GATC	3 cut(s)	335, 392, 642
BssNAI	GTATAC	1 cut(s)	97
BssT1I	CCWWGG	1 cut(s)	44
Bst1107I	GTATAC	1 cut(s)	97
Bst2UI	CCWGG	4 cut(s)	257, 401, 507, 569
Bst4CI	ACNGT	3 cut(s)	75, 562, 712
BstDEI	CTNAG	2 cut(s)	186, 348
BstF5I	GGATG	1 cut(s)	286
BstKTI	GATC	3 cut(s)	338, 395, 645
BstMBI	GATC	3 cut(s)	335, 392, 642
BstMWI	GCNNNNNNNGC	1 cut(s)	434
BstNI	CCWGG	4 cut(s)	257, 401, 507, 569
BstNSI	RCATGY	1 cut(s)	754
BstSCI	CCNGG	5 cut(s)	255, 292, 399, 505, 567
BstX2I	RGATCY	2 cut(s)	392, 642
BstYI	RGATCY	2 cut(s)	392, 642
BstZ17I	GTATAC	1 cut(s)	97
BsuI	GTATCC	1 cut(s)	373
BtsCI	GGATG	1 cut(s)	286
CciI	TCATGA	2 cut(s)	115, 217
Cfr10I	RCCGGY	1 cut(s)	518
Csp6I	GTAC	2 cut(s)	51, 576
CspAI	ACCGGT	1 cut(s)	518
CviAII	CATG	7 cut(s)	116, 218, 268, 470, 529, 639, 751
CviJI	RGCY	9 cut(s)	11, 113, 147, 204, 343, 490, 611, 680, 693
CviKI_1	RGCY	9 cut(s)	11, 113, 147, 204, 343, 490, 611, 680, 693
CviQI	GTAC	2 cut(s)	51, 576
DdeI	CTNAG	2 cut(s)	186, 348
DpnI	GATC	3 cut(s)	337, 394, 644
DpnII	GATC	3 cut(s)	335, 392, 642
DrdI	GACNNNNNNGTC	2 cut(s)	31, 251
DriI	GACNNNNNGTC	1 cut(s)	63
DseDI	GACNNNNNNGTC	2 cut(s)	31, 251
Eam1105I	GACNNNNNGTC	1 cut(s)	63
EciI	GGCGGA	1 cut(s)	28
Eco130I	CCWWGG	1 cut(s)	44
Eco32I	GATATC	2 cut(s)	412, 512
Eco57I	CTGAAG	1 cut(s)	453
EcoRII	CCWGG	4 cut(s)	255, 399, 505, 567
EcoRV	GATATC	2 cut(s)	412, 512
EcoT14I	CCWWGG	1 cut(s)	44
ErhI	CCWWGG	1 cut(s)	44
FaeI	CATG	7 cut(s)	119, 221, 271, 473, 532, 642, 754
FaqI	GGGAC	3 cut(s)	70, 488, 555
FatI	CATG	7 cut(s)	115, 217, 267, 469, 528, 638, 750
FauNDI	CATATG	2 cut(s)	499, 546
FblI	GTMKAC	3 cut(s)	77, 96, 670
FokI	GGATG	1 cut(s)	293
FspBI	CTAG	2 cut(s)	608, 779
GsuI	CTGGAG	2 cut(s)	339, 551
HapII	CCGG	2 cut(s)	293, 519
Hin1II	CATG	7 cut(s)	119, 221, 271, 473, 532, 642, 754
HindIII	AAGCTT	1 cut(s)	341
HinfI	GANTC	3 cut(s)	64, 132, 164
HpaII	CCGG	2 cut(s)	293, 519
HphI	GGTGA	3 cut(s)	26, 63, 652
Hpy166II	GTNNAC	4 cut(s)	78, 97, 576, 671
Hpy188I	TCNGA	4 cut(s)	157, 187, 433, 597
Hpy188III	TCNNGA	4 cut(s)	116, 218, 318, 743
Hpy8I	GTNNAC	4 cut(s)	78, 97, 576, 671
HpyAV	CCTTC	1 cut(s)	78
HpyCH4III	ACNGT	3 cut(s)	75, 562, 712
HpyCH4IV	ACGT	1 cut(s)	32
HpyCH4V	TGCA	3 cut(s)	452, 497, 638
HpyF10VI	GCNNNNNNNGC	1 cut(s)	434
HpyF3I	CTNAG	2 cut(s)	186, 348
HpySE526I	ACGT	1 cut(s)	32
Hsp92II	CATG	7 cut(s)	119, 221, 271, 473, 532, 642, 754
Kzo9I	GATC	3 cut(s)	335, 392, 642
LmnI	GCTCC	1 cut(s)	271
LweI	GCATC	1 cut(s)	461
MaeI	CTAG	2 cut(s)	608, 779
MaeII	ACGT	1 cut(s)	32
MaeIII	GTNAC	3 cut(s)	242, 631, 658
MalI	GATC	3 cut(s)	337, 394, 644
MboI	GATC	3 cut(s)	335, 392, 642
MboII	GAAGA	1 cut(s)	447
MflI	RGATCY	2 cut(s)	392, 642
MluCI	AATT	3 cut(s)	194, 352, 492
MlyI	GAGTC	1 cut(s)	73
MmeI	TCCRAC	2 cut(s)	109, 740
MseI	TTAA	1 cut(s)	773
MspI	CCGG	2 cut(s)	293, 519
MspR9I	CCNGG	5 cut(s)	257, 294, 401, 507, 569
MvaI	CCWGG	4 cut(s)	257, 401, 507, 569
MwoI	GCNNNNNNNGC	1 cut(s)	434
NciI	CCSGG	1 cut(s)	294
NdeI	CATATG	2 cut(s)	499, 546
NdeII	GATC	3 cut(s)	335, 392, 642
NlaIII	CATG	7 cut(s)	119, 221, 271, 473, 532, 642, 754
NmuCI	GTSAC	2 cut(s)	242, 658
NspI	RCATGY	1 cut(s)	754
PagI	TCATGA	2 cut(s)	115, 217
PciI	ACATGT	1 cut(s)	750
PfeI	GAWTC	2 cut(s)	132, 164
PfoI	TCCNGGA	1 cut(s)	567
PinAI	ACCGGT	1 cut(s)	518
PleI	GAGTC	1 cut(s)	72
PpsI	GAGTC	1 cut(s)	72
PscI	ACATGT	1 cut(s)	750
Psp6I	CCWGG	4 cut(s)	255, 399, 505, 567
PspGI	CCWGG	4 cut(s)	255, 399, 505, 567
PsuI	RGATCY	2 cut(s)	392, 642
RsaI	GTAC	2 cut(s)	52, 577
RsaNI	GTAC	2 cut(s)	51, 576
SaqAI	TTAA	1 cut(s)	773
Sau3AI	GATC	3 cut(s)	335, 392, 642
ScaI	AGTACT	1 cut(s)	52
SchI	GAGTC	1 cut(s)	73
ScrFI	CCNGG	5 cut(s)	257, 294, 401, 507, 569
SfaNI	GCATC	1 cut(s)	461
SmlI	CTYRAG	1 cut(s)	664
SmoI	CTYRAG	1 cut(s)	664
Sse9I	AATT	3 cut(s)	194, 352, 492
SsiI	CCGC	1 cut(s)	39
SspMI	CTAG	2 cut(s)	608, 779
StyD4I	CCNGG	5 cut(s)	255, 292, 399, 505, 567
StyI	CCWWGG	1 cut(s)	44
TaaI	ACNGT	3 cut(s)	75, 562, 712
TaiI	ACGT	1 cut(s)	35
TasI	AATT	3 cut(s)	194, 352, 492
TatI	WGTACW	2 cut(s)	50, 575
TfiI	GAWTC	2 cut(s)	132, 164
Tru1I	TTAA	1 cut(s)	773
Tru9I	TTAA	1 cut(s)	773
TseFI	GTSAC	2 cut(s)	242, 658
Tsp45I	GTSAC	2 cut(s)	242, 658
TspDTI	ATGAA	6 cut(s)	128, 206, 234, 297, 545, 563
XapI	RAATTY	1 cut(s)	352
XceI	RCATGY	1 cut(s)	754
XmiI	GTMKAC	3 cut(s)	77, 96, 670
XspI	CTAG	2 cut(s)	608, 779
ZrmI	AGTACT	1 cut(s)	52

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.