Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0005312

Physical Location & Seq

Genomic Coordinates Reverse (-)

86671877 .. 86672595

Gene Structure 719 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG645800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGGCATTGGTTACCCATCAAATGCAGGGTTCGTTTGTGACATATCCGTCCTGGCCTTTGTCACGGAGCAAGGGGATGAAGTTGAAGTGGTATGTAACAACACTTCACATGGTTGGGAGAACAGAGAGTTACTCTATTATAAAGCACAATATTTGTTTGAGTGTAGGGGCTTCTCCCTTGCGTGGACCAAAACTTAAATCTTTGAGAGTTTCAGCCTTCAAGGGTAATGCCCAGAACGATAAATCTGGAGGTAGAAAAGGTGGATCAAAGCTTCCTAAGAATTCGGTCAAACTAAAAGAGAATGAGGATACCAAAGCGGGTTCCCCCAAGGCAAATGATATCCCTATTTCCTATACCTCTGAAGCAAATGAGAGTATTGCATCTTCCCCTGCCAAACATAATCTGTTTAAGAAATGGTTGGGAATGCTCCAAACGAAATCATCAGGTGAAGTAGTAGACGGGATTTTGGGAGAAGAACCTCCTCAAAAGGTGATATCAGAAACTGAGCACGAGACTCAAAACGAGGAGAGAGATGCTGTTCTTGAAGTTCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

184

Amino Acids

20.15

Weight (kDa)

9.45

Isoelectric Point (pI)

38.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005312)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63050 AT5G63050
fragaria_vesca	FvH4_5g05630
malus_domestica	MD06G1170900.v1.1 MD14G1176600.v1.1
prunus_persica	Prupe.5G170500_v2.0.a1 Prupe.5G170500_v2.0.a1
pyrus_communis	pycom06g15240 pycom14g14750
rosa_chinensis	RchiOBHm_Chr7g0193181
rosa_laevigata	RLG00000004289 RLG00000022163 RLG00000026387
rosa_multiflora	Rmu_ssc0000092.1_g000029
rosa_roxburghii	Rroxscaffold_2G00079190 Rroxscaffold_3G00262310 Rroxscaffold_6G00395460
rosa_rugosa	Rorug02G0253700 Rorug02G0565700 Rorug07G0008100
rosa_samantha	Rh2AG645800 Rh2BG656500 Rh2CG621600 Rh2DG669900 Rh7AG133500 Rh7BG134500 Rh7CG137400 Rh7DG135500
rosa_wichuraiana	Rw7G011410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	140
AasI	GACNNNNNNGTC	1 cut(s)	46
AccI	GTMKAC	1 cut(s)	456
AciI	CCGC	1 cut(s)	317
AclWI	GGATC	1 cut(s)	271
AcsI	RAATTY	1 cut(s)	280
AcuI	CTGAAG	1 cut(s)	381
AfiI	CCNNNNNNNGG	1 cut(s)	182
AgsI	TTSAA	3 cut(s)	85, 220, 545
AjnI	CCWGG	1 cut(s)	50
AluBI	AGCT	1 cut(s)	271
AluI	AGCT	1 cut(s)	271
Alw21I	GWGCWC	1 cut(s)	510
Alw26I	GTCTC	1 cut(s)	506
AlwI	GGATC	1 cut(s)	271
AlwNI	CAGNNNCTG	1 cut(s)	503
AoxI	GGCC	1 cut(s)	53
ApoI	RAATTY	1 cut(s)	280
AspS9I	GGNCC	1 cut(s)	185
AsuHPI	GGTGA	2 cut(s)	458, 502
AvaII	GGWCC	1 cut(s)	185
BarI	GAAGNNNNNNTAC	4 cut(s)	87, 119, 367, 399
BauI	CACGAG	1 cut(s)	509
Bbv12I	GWGCWC	1 cut(s)	510
BccI	CCATC	1 cut(s)	24
BciT130I	CCWGG	1 cut(s)	52
BciVI	GTATCC	1 cut(s)	301
BcoDI	GTCTC	1 cut(s)	506
BfuI	GTATCC	1 cut(s)	301
Bme1390I	CCNGG	1 cut(s)	52
Bme18I	GGWCC	1 cut(s)	185
BmgT120I	GGNCC	1 cut(s)	185
BmiI	GGNNCC	1 cut(s)	322
BmrFI	CCNGG	1 cut(s)	52
BmsI	GCATC	2 cut(s)	389, 523
BplI	GAGNNNNNCTC	2 cut(s)	116, 148
BpmI	CTGGAG	1 cut(s)	267
BsaJI	CCNNGG	1 cut(s)	327
Bsc4I	CCNNNNNNNGG	1 cut(s)	182
BseBI	CCWGG	1 cut(s)	52
BseDI	CCNNGG	1 cut(s)	327
BseGI	GGATG	1 cut(s)	81
BseLI	CCNNNNNNNGG	1 cut(s)	182
BseMII	CTCAG	1 cut(s)	495
BseRI	GAGGAG	2 cut(s)	471, 539
BshFI	GGCC	1 cut(s)	55
BsiHKAI	GWGCWC	1 cut(s)	510
BslI	CCNNNNNNNGG	1 cut(s)	182
BsmAI	GTCTC	1 cut(s)	506
BsmI	GAATGC	1 cut(s)	429
BsnI	GGCC	1 cut(s)	55
Bsp1286I	GDGCHC	1 cut(s)	510
Bsp143I	GATC	1 cut(s)	263
BspACI	CCGC	1 cut(s)	317
BspANI	GGCC	1 cut(s)	55
BspCNI	CTCAG	1 cut(s)	496
BspLI	GGNNCC	1 cut(s)	322
BspPI	GGATC	1 cut(s)	271
BssECI	CCNNGG	1 cut(s)	327
BssMI	GATC	1 cut(s)	263
BssSI	CACGAG	1 cut(s)	509
BssT1I	CCWWGG	1 cut(s)	327
Bst2BI	CACGAG	1 cut(s)	509
Bst2UI	CCWGG	1 cut(s)	52
BstDEI	CTNAG	2 cut(s)	276, 504
BstEII	GGTNACC	1 cut(s)	10
BstF5I	GGATG	1 cut(s)	81
BstKTI	GATC	1 cut(s)	266
BstMAI	GTCTC	1 cut(s)	506
BstMBI	GATC	1 cut(s)	263
BstNI	CCWGG	1 cut(s)	52
BstPI	GGTNACC	1 cut(s)	10
BstSCI	CCNGG	1 cut(s)	50
BsuI	GTATCC	1 cut(s)	301
BsuRI	GGCC	1 cut(s)	55
BtsCI	GGATG	1 cut(s)	81
CaiI	CAGNNNCTG	1 cut(s)	503
Cfr13I	GGNCC	1 cut(s)	185
CviAII	CATG	1 cut(s)	109
CviJI	RGCY	4 cut(s)	55, 170, 215, 271
CviKI_1	RGCY	4 cut(s)	55, 170, 215, 271
DdeI	CTNAG	2 cut(s)	276, 504
DpnI	GATC	1 cut(s)	265
DpnII	GATC	1 cut(s)	263
DrdI	GACNNNNNNGTC	1 cut(s)	46
DseDI	GACNNNNNNGTC	1 cut(s)	46
Eco130I	CCWWGG	1 cut(s)	327
Eco32I	GATATC	2 cut(s)	340, 495
Eco47I	GGWCC	1 cut(s)	185
Eco57I	CTGAAG	1 cut(s)	381
Eco91I	GGTNACC	1 cut(s)	10
EcoO65I	GGTNACC	1 cut(s)	10
EcoRI	GAATTC	1 cut(s)	280
EcoRII	CCWGG	1 cut(s)	50
EcoRV	GATATC	2 cut(s)	340, 495
EcoT14I	CCWWGG	1 cut(s)	327
ErhI	CCWWGG	1 cut(s)	327
FaeI	CATG	1 cut(s)	112
FaiI	YATR	7 cut(s)	43, 93, 110, 140, 354, 399, 553
FatI	CATG	1 cut(s)	108
FauI	CCCGC	1 cut(s)	310
FblI	GTMKAC	1 cut(s)	456
FokI	GGATG	1 cut(s)	88
GsuI	CTGGAG	1 cut(s)	267
HaeIII	GGCC	1 cut(s)	55
Hin1II	CATG	1 cut(s)	112
HindIII	AAGCTT	1 cut(s)	269
HinfI	GANTC	1 cut(s)	514
HphI	GGTGA	2 cut(s)	458, 502
Hpy166II	GTNNAC	2 cut(s)	185, 457
Hpy188I	TCNGA	2 cut(s)	361, 499
Hpy188III	TCNNGA	2 cut(s)	246, 542
Hpy8I	GTNNAC	2 cut(s)	185, 457
HpyAV	CCTTC	1 cut(s)	226
HpyCH4V	TGCA	2 cut(s)	25, 380
HpyF3I	CTNAG	2 cut(s)	276, 504
Hsp92II	CATG	1 cut(s)	112
Kzo9I	GATC	1 cut(s)	263
LmnI	GCTCC	2 cut(s)	66, 432
LpnPI	CCDG	7 cut(s)	11, 37, 64, 231, 245, 402, 429
LweI	GCATC	2 cut(s)	389, 523
MaeIII	GTNAC	5 cut(s)	10, 37, 60, 94, 128
MalI	GATC	1 cut(s)	265
MboI	GATC	1 cut(s)	263
MboII	GAAGA	2 cut(s)	375, 485
MhlI	GDGCHC	1 cut(s)	510
MluCI	AATT	1 cut(s)	280
MlyI	GAGTC	1 cut(s)	508
MnlI	CCTC	6 cut(s)	242, 298, 367, 489, 492, 517
MseI	TTAA	2 cut(s)	195, 408
MspR9I	CCNGG	1 cut(s)	52
Mva1269I	GAATGC	1 cut(s)	429
MvaI	CCWGG	1 cut(s)	52
NdeII	GATC	1 cut(s)	263
NlaIII	CATG	1 cut(s)	112
NlaIV	GGNNCC	1 cut(s)	322
NmuCI	GTSAC	2 cut(s)	37, 60
PctI	GAATGC	1 cut(s)	429
PleI	GAGTC	1 cut(s)	508
PpsI	GAGTC	1 cut(s)	508
PsiI	TTATAA	1 cut(s)	140
Psp6I	CCWGG	1 cut(s)	50
PspEI	GGTNACC	1 cut(s)	10
PspGI	CCWGG	1 cut(s)	50
PspN4I	GGNNCC	1 cut(s)	322
PspPI	GGNCC	1 cut(s)	185
PstNI	CAGNNNCTG	1 cut(s)	503
SaqAI	TTAA	2 cut(s)	195, 408
Sau3AI	GATC	1 cut(s)	263
Sau96I	GGNCC	1 cut(s)	185
SchI	GAGTC	1 cut(s)	508
ScrFI	CCNGG	1 cut(s)	52
SduI	GDGCHC	1 cut(s)	510
SetI	ASST	7 cut(s)	253, 262, 273, 359, 448, 481, 492
SfaNI	GCATC	2 cut(s)	389, 523
SinI	GGWCC	1 cut(s)	185
Sse9I	AATT	1 cut(s)	280
SsiI	CCGC	1 cut(s)	317
SspI	AATATT	1 cut(s)	151
StyD4I	CCNGG	1 cut(s)	50
StyI	CCWWGG	1 cut(s)	327
TaqII	GACCGA	1 cut(s)	274
TasI	AATT	1 cut(s)	280
Tru1I	TTAA	2 cut(s)	195, 408
Tru9I	TTAA	2 cut(s)	195, 408
TseFI	GTSAC	2 cut(s)	37, 60
Tsp45I	GTSAC	2 cut(s)	37, 60
TspDTI	ATGAA	1 cut(s)	92
TspGWI	ACGGA	2 cut(s)	36, 79
VpaK11BI	GGWCC	1 cut(s)	185
XapI	RAATTY	1 cut(s)	280
XmiI	GTMKAC	1 cut(s)	456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.