Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0005312

Physical Location & Seq

Genomic Coordinates Forward (+)

10716229 .. 10719092

Gene Structure 2864 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G011410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGGCATTGGTTACCCATCAAATGCAGGGTTCGTTTGTGACGTATCCATCCAGGCCTTTGTCATGGAGCAAGGGGATGAAGTTGAAGCGGTGTGTAACAACACTTCACATTGTTGGGAGAACAGATAGTTGCTCTATTATAAAGCACAATATTTGTTTCAGGTGGGAACTTCCTTCAAGTCTGTTATGTTGTGTAGGGGCTTCTCCCATGCGTGGACCAAAACTTAAACCATTGAGAGTTTCAGCCTTCAAGGGCAATGCCCAGAATGATAAATCTGGAGGTAGAAAAGGTGGATCAAAGCTTCCTAAGAATTCAGTCAAACTAAAAGAGAATGAGGATCCCAAAGCGGGATCTCCCCAGGCAAATGATATCCCTATTTCGTATGCCTCTGAAGCAAATGAGAGTATTGCATCTTCCCTTGCCATACATAATCTGTTTAAGAAATGGTTGAGAATGCTCCGAACGCATTCATCAGGTGAAGTAGTAGATGGGATTTTGGGAGAAGAACCTCCTCAAAAGGTGATATCAGAAACTGAGCATGAGACTCAAAACGAGGAGAGAGATGGTATTCTAAGGATGGTTTGGTGCAGTTTTCTCAGTCTAAATGCTACAATAAAGATACCCTTGCTTATCTTCATCCCCTCGTACCTGGCAGTGAATATACTTTATGGCGCCGAAGTTTCAAAGGAGTTAACTCCTTTGTGGGTTCTGGGACCCTTCATTGCAGCTCTCTACATCAAGATGCTTCAGTGGTTGTGTGCACTCTATGTTTTCAGCTTCAAGCAGACTGTTAAAGTAATCAAGAACTTGCCCACTTATTACCTGGTGGCGTATAGATACATATTTCATGGGAAGCTTAAAGAGGATGTATATGCTCGTTTCTGGCAGCCTGTAGCTGACATTAAGAATTTAGATTACAAGAAACTATCCAGAAGAAAGCTGAAAGTATTACAAGAGTTAATATTGGAGAAGTACCTTGATTTTGTGGAATCAATATGGCCATATTATTGCAGAGCAATCAGATTCTTAAAGAGGGCTAATCTCATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

349

Amino Acids

39.83

Weight (kDa)

9.61

Isoelectric Point (pI)

38.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005312)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63050 AT5G63050
fragaria_vesca	FvH4_5g05630
malus_domestica	MD06G1170900.v1.1 MD14G1176600.v1.1
prunus_persica	Prupe.5G170500_v2.0.a1 Prupe.5G170500_v2.0.a1
pyrus_communis	pycom06g15240 pycom14g14750
rosa_chinensis	RchiOBHm_Chr7g0193181
rosa_laevigata	RLG00000004289 RLG00000022163 RLG00000026387
rosa_multiflora	Rmu_ssc0000092.1_g000029
rosa_roxburghii	Rroxscaffold_2G00079190 Rroxscaffold_3G00262310 Rroxscaffold_6G00395460
rosa_rugosa	Rorug02G0253700 Rorug02G0565700 Rorug07G0008100
rosa_samantha	Rh2AG645800 Rh2BG656500 Rh2CG621600 Rh2DG669900 Rh7AG133500 Rh7BG134500 Rh7CG137400 Rh7DG135500
rosa_wichuraiana	Rw7G011410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	140
AccB1I	GGYRCC	1 cut(s)	671
AciI	CCGC	2 cut(s)	88, 347
AclWI	GGATC	4 cut(s)	301, 332, 345, 358
AcoI	YGGCCR	1 cut(s)	998
AcsI	RAATTY	2 cut(s)	310, 907
AcuI	CTGAAG	2 cut(s)	411, 731
AcyI	GRCGYC	1 cut(s)	672
AfaI	GTAC	2 cut(s)	647, 974
AfiI	CCNNNNNNNGG	2 cut(s)	212, 347
AgsI	TTSAA	5 cut(s)	85, 177, 250, 684, 781
AjnI	CCWGG	4 cut(s)	50, 357, 648, 822
AluBI	AGCT	6 cut(s)	301, 728, 777, 856, 896, 940
AluI	AGCT	6 cut(s)	301, 728, 777, 856, 896, 940
Alw21I	GWGCWC	1 cut(s)	763
Alw26I	GTCTC	1 cut(s)	536
Alw44I	GTGCAC	1 cut(s)	759
AlwI	GGATC	4 cut(s)	301, 332, 345, 358
AlwNI	CAGNNNCTG	1 cut(s)	533
AoxI	GGCC	2 cut(s)	53, 998
ApaLI	GTGCAC	1 cut(s)	759
ApeKI	GCWGC	2 cut(s)	725, 886
ApoI	RAATTY	2 cut(s)	310, 907
Asp700I	GAANNNNTTC	1 cut(s)	466
AspLEI	GCGC	1 cut(s)	674
AspS9I	GGNCC	2 cut(s)	215, 713
AsuHPI	GGTGA	2 cut(s)	488, 532
AvaII	GGWCC	2 cut(s)	215, 713
BaeGI	GKGCMC	1 cut(s)	763
BalI	TGGCCA	1 cut(s)	1000
BamHI	GGATCC	1 cut(s)	337
BanI	GGYRCC	1 cut(s)	671
BarI	GAAGNNNNNNTAC	4 cut(s)	87, 119, 397, 429
Bbv12I	GWGCWC	1 cut(s)	763
BbvI	GCAGC	2 cut(s)	737, 898
BccI	CCATC	5 cut(s)	24, 55, 482, 557, 571
BciT130I	CCWGG	4 cut(s)	52, 359, 650, 824
BciVI	GTATCC	1 cut(s)	54
BcoDI	GTCTC	1 cut(s)	536
BfmI	CTRYAG	1 cut(s)	891
BfoI	RGCGCY	1 cut(s)	675
BfuI	GTATCC	1 cut(s)	54
BisI	GCNGC	2 cut(s)	726, 887
BlsI	GCNGC	2 cut(s)	727, 888
Bme1390I	CCNGG	4 cut(s)	52, 359, 650, 824
Bme18I	GGWCC	2 cut(s)	215, 713
BmgT120I	GGNCC	2 cut(s)	215, 713
BmiI	GGNNCC	4 cut(s)	339, 673, 714, 715
BmrFI	CCNGG	4 cut(s)	52, 359, 650, 824
BmsI	GCATC	2 cut(s)	419, 732
BpmI	CTGGAG	1 cut(s)	297
BsaHI	GRCGYC	1 cut(s)	672
BsaJI	CCNNGG	1 cut(s)	357
Bsc4I	CCNNNNNNNGG	2 cut(s)	212, 347
Bse3DI	GCAATG	2 cut(s)	262, 720
BseBI	CCWGG	4 cut(s)	52, 359, 650, 824
BseDI	CCNNGG	1 cut(s)	357
BseGI	GGATG	5 cut(s)	47, 81, 582, 636, 871
BseLI	CCNNNNNNNGG	2 cut(s)	212, 347
BseMI	GCAATG	2 cut(s)	262, 720
BseMII	CTCAG	2 cut(s)	525, 610
BseRI	GAGGAG	2 cut(s)	501, 569
BseSI	GKGCMC	1 cut(s)	763
BseXI	GCAGC	2 cut(s)	737, 898
BsgI	GTGCAG	1 cut(s)	607
BshFI	GGCC	2 cut(s)	55, 1000
BshNI	GGYRCC	1 cut(s)	671
BsiHKAI	GWGCWC	1 cut(s)	763
BslFI	GGGAC	1 cut(s)	726
BslI	CCNNNNNNNGG	2 cut(s)	212, 347
BsmAI	GTCTC	1 cut(s)	536
BsmFI	GGGAC	1 cut(s)	726
BsmI	GAATGC	2 cut(s)	459, 466
BsnI	GGCC	2 cut(s)	55, 1000
Bsp1286I	GDGCHC	1 cut(s)	763
Bsp143I	GATC	3 cut(s)	293, 337, 350
BspACI	CCGC	2 cut(s)	88, 347
BspANI	GGCC	2 cut(s)	55, 1000
BspCNI	CTCAG	2 cut(s)	526, 609
BspLI	GGNNCC	4 cut(s)	339, 673, 714, 715
BspPI	GGATC	4 cut(s)	301, 332, 345, 358
BspT107I	GGYRCC	1 cut(s)	671
BsrDI	GCAATG	2 cut(s)	262, 720
BssECI	CCNNGG	1 cut(s)	357
BssMI	GATC	3 cut(s)	293, 337, 350
BssNI	GRCGYC	1 cut(s)	672
Bst2UI	CCWGG	4 cut(s)	52, 359, 650, 824
Bst4CI	ACNGT	1 cut(s)	790
BstACI	GRCGYC	1 cut(s)	672
BstDEI	CTNAG	4 cut(s)	306, 534, 572, 596
BstEII	GGTNACC	1 cut(s)	10
BstF5I	GGATG	5 cut(s)	47, 81, 582, 636, 871
BstH2I	RGCGCY	1 cut(s)	675
BstHHI	GCGC	1 cut(s)	674
BstKTI	GATC	3 cut(s)	296, 340, 353
BstMAI	GTCTC	1 cut(s)	536
BstMBI	GATC	3 cut(s)	293, 337, 350
BstMWI	GCNNNNNNNGC	2 cut(s)	392, 463
BstNI	CCWGG	4 cut(s)	52, 359, 650, 824
BstPI	GGTNACC	1 cut(s)	10
BstSCI	CCNGG	4 cut(s)	50, 357, 648, 822
BstSFI	CTRYAG	1 cut(s)	891
BstSLI	GKGCMC	1 cut(s)	763
BstV1I	GCAGC	2 cut(s)	737, 898
BstX2I	RGATCY	2 cut(s)	337, 350
BstYI	RGATCY	2 cut(s)	337, 350
BsuI	GTATCC	1 cut(s)	54
BsuRI	GGCC	2 cut(s)	55, 1000
BtsCI	GGATG	5 cut(s)	47, 81, 582, 636, 871
BtsI	GCAGTG	1 cut(s)	660
BtsIMutI	CAGTG	2 cut(s)	660, 755
CaiI	CAGNNNCTG	1 cut(s)	533
CfoI	GCGC	1 cut(s)	674
Cfr13I	GGNCC	2 cut(s)	215, 713
CsiI	ACCWGGT	1 cut(s)	822
Csp6I	GTAC	2 cut(s)	646, 973
CviAII	CATG	4 cut(s)	63, 208, 539, 848
CviQI	GTAC	2 cut(s)	646, 973
DdeI	CTNAG	4 cut(s)	306, 534, 572, 596
DinI	GGCGCC	1 cut(s)	673
DpnI	GATC	3 cut(s)	295, 339, 352
DpnII	GATC	3 cut(s)	293, 337, 350
EaeI	YGGCCR	1 cut(s)	998
Eco147I	AGGCCT	1 cut(s)	55
Eco32I	GATATC	2 cut(s)	370, 525
Eco47I	GGWCC	2 cut(s)	215, 713
Eco57I	CTGAAG	2 cut(s)	411, 731
Eco91I	GGTNACC	1 cut(s)	10
EcoO109I	RGGNCCY	1 cut(s)	713
EcoO65I	GGTNACC	1 cut(s)	10
EcoRI	GAATTC	1 cut(s)	310
EcoRII	CCWGG	4 cut(s)	50, 357, 648, 822
EcoRV	GATATC	2 cut(s)	370, 525
EgeI	GGCGCC	1 cut(s)	673
EheI	GGCGCC	1 cut(s)	673
FaeI	CATG	4 cut(s)	66, 211, 542, 851
FalI	AAGNNNNNCTT	2 cut(s)	608, 640
FaqI	GGGAC	1 cut(s)	726
FatI	CATG	4 cut(s)	62, 207, 538, 847
FauI	CCCGC	1 cut(s)	340
Fnu4HI	GCNGC	2 cut(s)	726, 887
FokI	GGATG	5 cut(s)	34, 88, 589, 623, 878
Fsp4HI	GCNGC	2 cut(s)	726, 887
GlaI	GCGC	1 cut(s)	673
GluI	GCNGC	2 cut(s)	726, 887
GsuI	CTGGAG	1 cut(s)	297
HaeII	RGCGCY	1 cut(s)	675
HaeIII	GGCC	2 cut(s)	55, 1000
HhaI	GCGC	1 cut(s)	674
Hin1I	GRCGYC	1 cut(s)	672
Hin1II	CATG	4 cut(s)	66, 211, 542, 851
Hin6I	GCGC	1 cut(s)	672
HinP1I	GCGC	1 cut(s)	672
HincII	GTYRAC	1 cut(s)	693
HindII	GTYRAC	1 cut(s)	693
HindIII	AAGCTT	2 cut(s)	299, 854
HinfI	GANTC	3 cut(s)	544, 989, 1023
HpaI	GTTAAC	1 cut(s)	693
HphI	GGTGA	2 cut(s)	488, 532
Hpy166II	GTNNAC	3 cut(s)	215, 693, 761
Hpy188I	TCNGA	4 cut(s)	391, 461, 529, 1022
Hpy188III	TCNNGA	4 cut(s)	276, 739, 802, 930
Hpy8I	GTNNAC	3 cut(s)	215, 693, 761
HpyAV	CCTTC	3 cut(s)	183, 256, 727
HpyCH4III	ACNGT	1 cut(s)	790
HpyCH4IV	ACGT	1 cut(s)	41
HpyCH4V	TGCA	6 cut(s)	25, 410, 588, 725, 761, 1011
HpyF10VI	GCNNNNNNNGC	2 cut(s)	392, 463
HpyF3I	CTNAG	4 cut(s)	306, 534, 572, 596
HpySE526I	ACGT	1 cut(s)	41
Hsp92I	GRCGYC	1 cut(s)	672
Hsp92II	CATG	4 cut(s)	66, 211, 542, 851
HspAI	GCGC	1 cut(s)	672
KasI	GGCGCC	1 cut(s)	671
KflI	GGGWCCC	1 cut(s)	713
KspAI	GTTAAC	1 cut(s)	693
Kzo9I	GATC	3 cut(s)	293, 337, 350
LmnI	GCTCC	2 cut(s)	66, 462
Lsp1109I	GCAGC	2 cut(s)	737, 898
LweI	GCATC	2 cut(s)	419, 732
MabI	ACCWGGT	1 cut(s)	822
MaeII	ACGT	1 cut(s)	41
MaeIII	GTNAC	3 cut(s)	10, 37, 94
MalI	GATC	3 cut(s)	295, 339, 352
MboI	GATC	3 cut(s)	293, 337, 350
MboII	GAAGA	4 cut(s)	405, 515, 625, 945
MflI	RGATCY	2 cut(s)	337, 350
MhlI	GDGCHC	1 cut(s)	763
MlsI	TGGCCA	1 cut(s)	1000
MluCI	AATT	2 cut(s)	310, 907
MluNI	TGGCCA	1 cut(s)	1000
Mly113I	GGCGCC	1 cut(s)	672
MlyI	GAGTC	1 cut(s)	538
MnlI	CCTC	9 cut(s)	272, 328, 397, 519, 522, 547, 652, 856, 1026
Mox20I	TGGCCA	1 cut(s)	1000
MroXI	GAANNNNTTC	1 cut(s)	466
MscI	TGGCCA	1 cut(s)	1000
MseI	TTAA	8 cut(s)	225, 438, 692, 792, 858, 903, 959, 1028
MslI	CAYNNNNRTG	1 cut(s)	740
Msp20I	TGGCCA	1 cut(s)	1000
MspR9I	CCNGG	4 cut(s)	52, 359, 650, 824
Mva1269I	GAATGC	2 cut(s)	459, 466
MvaI	CCWGG	4 cut(s)	52, 359, 650, 824
MwoI	GCNNNNNNNGC	2 cut(s)	392, 463
NarI	GGCGCC	1 cut(s)	672
NdeII	GATC	3 cut(s)	293, 337, 350
NlaIII	CATG	4 cut(s)	66, 211, 542, 851
NlaIV	GGNNCC	4 cut(s)	339, 673, 714, 715
NmuCI	GTSAC	1 cut(s)	37
PceI	AGGCCT	1 cut(s)	55
PcsI	WCGNNNNNNNCGW	1 cut(s)	38
PctI	GAATGC	2 cut(s)	459, 466
PdmI	GAANNNNTTC	1 cut(s)	466
PfeI	GAWTC	2 cut(s)	989, 1023
PkrI	GCNGC	2 cut(s)	727, 888
PleI	GAGTC	1 cut(s)	538
PluTI	GGCGCC	1 cut(s)	675
PpsI	GAGTC	1 cut(s)	538
PpuMI	RGGWCCY	1 cut(s)	713
PsiI	TTATAA	1 cut(s)	140
Psp5II	RGGWCCY	1 cut(s)	713
Psp6I	CCWGG	4 cut(s)	50, 357, 648, 822
PspEI	GGTNACC	1 cut(s)	10
PspGI	CCWGG	4 cut(s)	50, 357, 648, 822
PspN4I	GGNNCC	4 cut(s)	339, 673, 714, 715
PspPI	GGNCC	2 cut(s)	215, 713
PspPPI	RGGWCCY	1 cut(s)	713
PstNI	CAGNNNCTG	1 cut(s)	533
PsuI	RGATCY	2 cut(s)	337, 350
RsaI	GTAC	2 cut(s)	647, 974
RsaNI	GTAC	2 cut(s)	646, 973
RseI	CAYNNNNRTG	1 cut(s)	740
SaqAI	TTAA	8 cut(s)	225, 438, 692, 792, 858, 903, 959, 1028
SatI	GCNGC	2 cut(s)	726, 887
Sau3AI	GATC	3 cut(s)	293, 337, 350
Sau96I	GGNCC	2 cut(s)	215, 713
SchI	GAGTC	1 cut(s)	538
ScrFI	CCNGG	4 cut(s)	52, 359, 650, 824
SduI	GDGCHC	1 cut(s)	763
SexAI	ACCWGGT	1 cut(s)	822
SfaNI	GCATC	2 cut(s)	419, 732
SfcI	CTRYAG	1 cut(s)	891
SfoI	GGCGCC	1 cut(s)	673
SinI	GGWCC	2 cut(s)	215, 713
SmiMI	CAYNNNNRTG	1 cut(s)	740
Sse9I	AATT	2 cut(s)	310, 907
SseBI	AGGCCT	1 cut(s)	55
SsiI	CCGC	2 cut(s)	88, 347
SspDI	GGCGCC	1 cut(s)	671
SspI	AATATT	2 cut(s)	151, 963
StuI	AGGCCT	1 cut(s)	55
StyD4I	CCNGG	4 cut(s)	50, 357, 648, 822
TaaI	ACNGT	1 cut(s)	790
TaiI	ACGT	1 cut(s)	44
TasI	AATT	2 cut(s)	310, 907
TfiI	GAWTC	2 cut(s)	989, 1023
Tru1I	TTAA	8 cut(s)	225, 438, 692, 792, 858, 903, 959, 1028
Tru9I	TTAA	8 cut(s)	225, 438, 692, 792, 858, 903, 959, 1028
TscAI	CASTG	2 cut(s)	660, 755
TseFI	GTSAC	1 cut(s)	37
TseI	GCWGC	2 cut(s)	725, 886
Tsp45I	GTSAC	1 cut(s)	37
TspDTI	ATGAA	5 cut(s)	92, 459, 625, 709, 836
TspRI	CASTG	2 cut(s)	660, 755
VneI	GTGCAC	1 cut(s)	759
VpaK11BI	GGWCC	2 cut(s)	215, 713
XapI	RAATTY	2 cut(s)	310, 907
XcmI	CCANNNNNNNNNTGG	1 cut(s)	820
XmnI	GAANNNNTTC	1 cut(s)	466

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.