Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0005312

Physical Location & Seq

Genomic Coordinates Reverse (-)

58008862 .. 58010682

Gene Structure 1821 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004289

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGGCATTGGTTACCCATCAAATGCAGGGTTCCTTTGTGACATATCCGTCCAGGCCTTTGTCATGGAGCAAGGGGATGAAGTTGAAGCGGTGTGTAACAACACTTCACATGGTTGGGAGGACAGAGAGTTGCTCTATTATAAAGCACAATATTTGTTTCAGTGTAGGGGCTTCTCCCATGCGTGGACCAAAACTTAAACCATTGAGAGTTTCAGCCTTTAAGGGAAATGCCCAGAATGATAAATCTGGAGGTAGAAAAGGTGGATCAAAGCTTCCTAAGAATTCGGTCAAACTAAAAGAGAATGAGGATCCCAAAGTGGGATCTCCCCAGGCAAATGATATCCCTATTTCCTATGCCTCTGAAGCAAATGAGAGTATTGCATCTTCCCCTGCCATACATAATCTGTTTAAGAAATGGTTGAGAATGCTCCGAACGCATTCATCAGGTGAAGTAGTAGACGGGATTTTGGGAGAAGAACCTCCTCAAAAGGTGATATCAGAAACTGAGCATGAGACTCAAAACGAGGAGAGAGATGGTATTCTAAGGATGGTTTGGTGCAGTTTTCTCAGTCTAAATGCTACAATAAAGATACCCTTGCTTATCTTCATCCCCTCGTACCTGGCAGTGAATATCCTTTATGGTGCCGAAGTTTCAAAGGAGTTAACTCCTTTGTGGGTTCTGGGACCCTTCATTGCAGCTCTCTACATCAAGATGCTTCAGTGGTTGTGTGCGCTCTATGTTTTCAGCTTTAAGCAGACTGTTAAAGTAATCAAGAACTTGCCCACTTATTACCTGGTGGCGTATAGATACATTTTTCATGGGAAGCTTAAAGAGGATGTATATGCTCGTTTCTGGCAACCTGTAGCTGACATTAAGAATTTAGATTTCAAGAAACTATCCAGAAGAAAGCTGAAAGTATTACAAGAGTTAATAGTGGAGAAGTACCTTGATTTTGTGGAATCAATATGGCCATATTATTGCAGAGCAATCAGATTCTTAAAGAGGGCTAATCTCATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

340

Amino Acids

38.65

Weight (kDa)

9.68

Isoelectric Point (pI)

35.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005312)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63050 AT5G63050
fragaria_vesca	FvH4_5g05630
malus_domestica	MD06G1170900.v1.1 MD14G1176600.v1.1
prunus_persica	Prupe.5G170500_v2.0.a1 Prupe.5G170500_v2.0.a1
pyrus_communis	pycom06g15240 pycom14g14750
rosa_chinensis	RchiOBHm_Chr7g0193181
rosa_laevigata	RLG00000004289 RLG00000022163 RLG00000026387
rosa_multiflora	Rmu_ssc0000092.1_g000029
rosa_roxburghii	Rroxscaffold_2G00079190 Rroxscaffold_3G00262310 Rroxscaffold_6G00395460
rosa_rugosa	Rorug02G0253700 Rorug02G0565700 Rorug07G0008100
rosa_samantha	Rh2AG645800 Rh2BG656500 Rh2CG621600 Rh2DG669900 Rh7AG133500 Rh7BG134500 Rh7CG137400 Rh7DG135500
rosa_wichuraiana	Rw7G011410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	140
AasI	GACNNNNNNGTC	1 cut(s)	46
AccB1I	GGYRCC	1 cut(s)	641
AccI	GTMKAC	1 cut(s)	456
AciI	CCGC	1 cut(s)	88
AclWI	GGATC	4 cut(s)	271, 302, 315, 328
AcoI	YGGCCR	1 cut(s)	968
AcsI	RAATTY	2 cut(s)	280, 877
AcuI	CTGAAG	2 cut(s)	381, 701
AfaI	GTAC	2 cut(s)	617, 944
AfiI	CCNNNNNNNGG	2 cut(s)	182, 317
AgsI	TTSAA	3 cut(s)	85, 654, 889
AjnI	CCWGG	4 cut(s)	50, 327, 618, 792
AluBI	AGCT	6 cut(s)	271, 698, 747, 826, 866, 910
AluI	AGCT	6 cut(s)	271, 698, 747, 826, 866, 910
Alw26I	GTCTC	1 cut(s)	506
AlwI	GGATC	4 cut(s)	271, 302, 315, 328
AlwNI	CAGNNNCTG	1 cut(s)	503
AoxI	GGCC	2 cut(s)	53, 968
ApeKI	GCWGC	1 cut(s)	695
ApoI	RAATTY	2 cut(s)	280, 877
Asp700I	GAANNNNTTC	1 cut(s)	436
AspLEI	GCGC	1 cut(s)	733
AspS9I	GGNCC	2 cut(s)	185, 683
AsuHPI	GGTGA	2 cut(s)	458, 502
AvaII	GGWCC	2 cut(s)	185, 683
BalI	TGGCCA	1 cut(s)	970
BamHI	GGATCC	1 cut(s)	307
BanI	GGYRCC	1 cut(s)	641
BarI	GAAGNNNNNNTAC	4 cut(s)	87, 119, 367, 399
BbvI	GCAGC	1 cut(s)	707
BccI	CCATC	3 cut(s)	24, 527, 541
BciT130I	CCWGG	4 cut(s)	52, 329, 620, 794
BcoDI	GTCTC	1 cut(s)	506
BfmI	CTRYAG	1 cut(s)	861
BisI	GCNGC	1 cut(s)	696
BlsI	GCNGC	1 cut(s)	697
Bme1390I	CCNGG	4 cut(s)	52, 329, 620, 794
Bme18I	GGWCC	2 cut(s)	185, 683
BmgT120I	GGNCC	2 cut(s)	185, 683
BmiI	GGNNCC	5 cut(s)	31, 309, 643, 684, 685
BmrFI	CCNGG	4 cut(s)	52, 329, 620, 794
BmsI	GCATC	2 cut(s)	389, 702
BplI	GAGNNNNNCTC	2 cut(s)	116, 148
BpmI	CTGGAG	1 cut(s)	267
BsaJI	CCNNGG	1 cut(s)	327
Bsc4I	CCNNNNNNNGG	2 cut(s)	182, 317
Bse3DI	GCAATG	1 cut(s)	690
BseBI	CCWGG	4 cut(s)	52, 329, 620, 794
BseDI	CCNNGG	1 cut(s)	327
BseGI	GGATG	4 cut(s)	81, 552, 606, 841
BseLI	CCNNNNNNNGG	2 cut(s)	182, 317
BseMI	GCAATG	1 cut(s)	690
BseMII	CTCAG	2 cut(s)	495, 580
BseRI	GAGGAG	2 cut(s)	471, 539
BseXI	GCAGC	1 cut(s)	707
BsgI	GTGCAG	1 cut(s)	577
BshFI	GGCC	2 cut(s)	55, 970
BshNI	GGYRCC	1 cut(s)	641
BslFI	GGGAC	1 cut(s)	696
BslI	CCNNNNNNNGG	2 cut(s)	182, 317
BsmAI	GTCTC	1 cut(s)	506
BsmFI	GGGAC	1 cut(s)	696
BsmI	GAATGC	2 cut(s)	429, 436
BsnI	GGCC	2 cut(s)	55, 970
Bsp143I	GATC	3 cut(s)	263, 307, 320
BspACI	CCGC	1 cut(s)	88
BspANI	GGCC	2 cut(s)	55, 970
BspCNI	CTCAG	2 cut(s)	496, 579
BspLI	GGNNCC	5 cut(s)	31, 309, 643, 684, 685
BspPI	GGATC	4 cut(s)	271, 302, 315, 328
BspT107I	GGYRCC	1 cut(s)	641
BsrDI	GCAATG	1 cut(s)	690
BssECI	CCNNGG	1 cut(s)	327
BssMI	GATC	3 cut(s)	263, 307, 320
Bst2UI	CCWGG	4 cut(s)	52, 329, 620, 794
Bst4CI	ACNGT	1 cut(s)	760
BstDEI	CTNAG	4 cut(s)	276, 504, 542, 566
BstEII	GGTNACC	1 cut(s)	10
BstF5I	GGATG	4 cut(s)	81, 552, 606, 841
BstHHI	GCGC	1 cut(s)	733
BstKTI	GATC	3 cut(s)	266, 310, 323
BstMAI	GTCTC	1 cut(s)	506
BstMBI	GATC	3 cut(s)	263, 307, 320
BstMWI	GCNNNNNNNGC	2 cut(s)	362, 433
BstNI	CCWGG	4 cut(s)	52, 329, 620, 794
BstPI	GGTNACC	1 cut(s)	10
BstSCI	CCNGG	4 cut(s)	50, 327, 618, 792
BstSFI	CTRYAG	1 cut(s)	861
BstV1I	GCAGC	1 cut(s)	707
BstX2I	RGATCY	2 cut(s)	307, 320
BstYI	RGATCY	2 cut(s)	307, 320
BsuRI	GGCC	2 cut(s)	55, 970
BtsCI	GGATG	4 cut(s)	81, 552, 606, 841
BtsI	GCAGTG	1 cut(s)	630
BtsIMutI	CAGTG	3 cut(s)	166, 630, 725
CaiI	CAGNNNCTG	1 cut(s)	503
CfoI	GCGC	1 cut(s)	733
Cfr13I	GGNCC	2 cut(s)	185, 683
CsiI	ACCWGGT	1 cut(s)	792
Csp6I	GTAC	2 cut(s)	616, 943
CviAII	CATG	5 cut(s)	63, 109, 178, 509, 818
CviQI	GTAC	2 cut(s)	616, 943
DdeI	CTNAG	4 cut(s)	276, 504, 542, 566
DpnI	GATC	3 cut(s)	265, 309, 322
DpnII	GATC	3 cut(s)	263, 307, 320
DrdI	GACNNNNNNGTC	1 cut(s)	46
DseDI	GACNNNNNNGTC	1 cut(s)	46
EaeI	YGGCCR	1 cut(s)	968
Eco147I	AGGCCT	1 cut(s)	55
Eco32I	GATATC	2 cut(s)	340, 495
Eco47I	GGWCC	2 cut(s)	185, 683
Eco57I	CTGAAG	2 cut(s)	381, 701
Eco91I	GGTNACC	1 cut(s)	10
EcoO109I	RGGNCCY	1 cut(s)	683
EcoO65I	GGTNACC	1 cut(s)	10
EcoRI	GAATTC	1 cut(s)	280
EcoRII	CCWGG	4 cut(s)	50, 327, 618, 792
EcoRV	GATATC	2 cut(s)	340, 495
FaeI	CATG	5 cut(s)	66, 112, 181, 512, 821
FalI	AAGNNNNNCTT	2 cut(s)	578, 610
FaqI	GGGAC	1 cut(s)	696
FatI	CATG	5 cut(s)	62, 108, 177, 508, 817
FblI	GTMKAC	1 cut(s)	456
Fnu4HI	GCNGC	1 cut(s)	696
FokI	GGATG	4 cut(s)	88, 559, 593, 848
Fsp4HI	GCNGC	1 cut(s)	696
GlaI	GCGC	1 cut(s)	732
GluI	GCNGC	1 cut(s)	696
GsuI	CTGGAG	1 cut(s)	267
HaeIII	GGCC	2 cut(s)	55, 970
HhaI	GCGC	1 cut(s)	733
Hin1II	CATG	5 cut(s)	66, 112, 181, 512, 821
Hin6I	GCGC	1 cut(s)	731
HinP1I	GCGC	1 cut(s)	731
HincII	GTYRAC	1 cut(s)	663
HindII	GTYRAC	1 cut(s)	663
HindIII	AAGCTT	2 cut(s)	269, 824
HinfI	GANTC	3 cut(s)	514, 959, 993
HpaI	GTTAAC	1 cut(s)	663
HphI	GGTGA	2 cut(s)	458, 502
Hpy166II	GTNNAC	3 cut(s)	185, 457, 663
Hpy188I	TCNGA	4 cut(s)	361, 431, 499, 992
Hpy188III	TCNNGA	5 cut(s)	246, 709, 772, 889, 900
Hpy8I	GTNNAC	3 cut(s)	185, 457, 663
HpyAV	CCTTC	1 cut(s)	697
HpyCH4III	ACNGT	1 cut(s)	760
HpyCH4V	TGCA	5 cut(s)	25, 380, 558, 695, 981
HpyF10VI	GCNNNNNNNGC	2 cut(s)	362, 433
HpyF3I	CTNAG	4 cut(s)	276, 504, 542, 566
Hsp92II	CATG	5 cut(s)	66, 112, 181, 512, 821
HspAI	GCGC	1 cut(s)	731
KflI	GGGWCCC	1 cut(s)	683
KspAI	GTTAAC	1 cut(s)	663
Kzo9I	GATC	3 cut(s)	263, 307, 320
LmnI	GCTCC	2 cut(s)	66, 432
Lsp1109I	GCAGC	1 cut(s)	707
LweI	GCATC	2 cut(s)	389, 702
MabI	ACCWGGT	1 cut(s)	792
MaeIII	GTNAC	3 cut(s)	10, 37, 94
MalI	GATC	3 cut(s)	265, 309, 322
MboI	GATC	3 cut(s)	263, 307, 320
MboII	GAAGA	4 cut(s)	375, 485, 595, 915
MflI	RGATCY	2 cut(s)	307, 320
MlsI	TGGCCA	1 cut(s)	970
MluCI	AATT	2 cut(s)	280, 877
MluNI	TGGCCA	1 cut(s)	970
MlyI	GAGTC	1 cut(s)	508
Mox20I	TGGCCA	1 cut(s)	970
MroXI	GAANNNNTTC	1 cut(s)	436
MscI	TGGCCA	1 cut(s)	970
MslI	CAYNNNNRTG	1 cut(s)	710
Msp20I	TGGCCA	1 cut(s)	970
MspR9I	CCNGG	4 cut(s)	52, 329, 620, 794
Mva1269I	GAATGC	2 cut(s)	429, 436
MvaI	CCWGG	4 cut(s)	52, 329, 620, 794
MwoI	GCNNNNNNNGC	2 cut(s)	362, 433
NdeII	GATC	3 cut(s)	263, 307, 320
NlaIII	CATG	5 cut(s)	66, 112, 181, 512, 821
NlaIV	GGNNCC	5 cut(s)	31, 309, 643, 684, 685
NmuCI	GTSAC	1 cut(s)	37
PceI	AGGCCT	1 cut(s)	55
PctI	GAATGC	2 cut(s)	429, 436
PdmI	GAANNNNTTC	1 cut(s)	436
PfeI	GAWTC	2 cut(s)	959, 993
PkrI	GCNGC	1 cut(s)	697
PleI	GAGTC	1 cut(s)	508
PpsI	GAGTC	1 cut(s)	508
PpuMI	RGGWCCY	1 cut(s)	683
PsiI	TTATAA	1 cut(s)	140
Psp5II	RGGWCCY	1 cut(s)	683
Psp6I	CCWGG	4 cut(s)	50, 327, 618, 792
PspEI	GGTNACC	1 cut(s)	10
PspGI	CCWGG	4 cut(s)	50, 327, 618, 792
PspN4I	GGNNCC	5 cut(s)	31, 309, 643, 684, 685
PspPI	GGNCC	2 cut(s)	185, 683
PspPPI	RGGWCCY	1 cut(s)	683
PstNI	CAGNNNCTG	1 cut(s)	503
PsuI	RGATCY	2 cut(s)	307, 320
RsaI	GTAC	2 cut(s)	617, 944
RsaNI	GTAC	2 cut(s)	616, 943
RseI	CAYNNNNRTG	1 cut(s)	710
SatI	GCNGC	1 cut(s)	696
Sau3AI	GATC	3 cut(s)	263, 307, 320
Sau96I	GGNCC	2 cut(s)	185, 683
SchI	GAGTC	1 cut(s)	508
ScrFI	CCNGG	4 cut(s)	52, 329, 620, 794
SexAI	ACCWGGT	1 cut(s)	792
SfaNI	GCATC	2 cut(s)	389, 702
SfcI	CTRYAG	1 cut(s)	861
SinI	GGWCC	2 cut(s)	185, 683
SmiMI	CAYNNNNRTG	1 cut(s)	710
Sse9I	AATT	2 cut(s)	280, 877
SseBI	AGGCCT	1 cut(s)	55
SsiI	CCGC	1 cut(s)	88
SspI	AATATT	1 cut(s)	151
StuI	AGGCCT	1 cut(s)	55
StyD4I	CCNGG	4 cut(s)	50, 327, 618, 792
TaaI	ACNGT	1 cut(s)	760
TaqII	GACCGA	1 cut(s)	274
TasI	AATT	2 cut(s)	280, 877
TfiI	GAWTC	2 cut(s)	959, 993
TscAI	CASTG	3 cut(s)	166, 630, 725
TseFI	GTSAC	1 cut(s)	37
TseI	GCWGC	1 cut(s)	695
Tsp45I	GTSAC	1 cut(s)	37
TspDTI	ATGAA	5 cut(s)	92, 429, 595, 679, 806
TspGWI	ACGGA	1 cut(s)	36
TspRI	CASTG	3 cut(s)	166, 630, 725
VpaK11BI	GGWCC	2 cut(s)	185, 683
XapI	RAATTY	2 cut(s)	280, 877
XcmI	CCANNNNNNNNNTGG	1 cut(s)	790
XmiI	GTMKAC	1 cut(s)	456
XmnI	GAANNNNTTC	1 cut(s)	436

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.