Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000092.1

Orthogroup ID

OG0005312

Physical Location & Seq

Genomic Coordinates Reverse (-)

143192 .. 145557

Gene Structure 2366 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000092.1_g000029.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

atgacagaagtgagtggtggagacaatggcattggttacccatcaaatgcagggttcgtttgtgacgtatccgtccaggcctttgtcatggagcaaggggatgaagttgaagcgaatttgtttcacagtgtaggggcttctcccatgcgtggaccaaaacttaaaccattgagagtttcagccttcaaaggcaatgcccagaatgataaatctggaggtagaaaaggtggatcaaagcttcctaagaattcagtcaaactaaaagagaatgaggatcccaaagcgggatctccccaggcaaatgatatccctatttcctatgcctctgaagcaaatgagagtattgcatcttcccttgccatacataatctgtttaagaaatggttgagaatgctccgaacgcattcatcaggtgaagtagtagacgggattttgggagaagaacctcctcaaaaggtgatatcagaaactgagcatgagactcaaaacgaggagagagatggtattctaaggatggtttggtgcagttttctcagtctaaatgctacaataaagatacccttgcttatcttcatcccctcgtacctggcagtgaatatactttatggcgccgaagtttcaaaggagttaactcctttgtgggttctgggacccttcattgcagctctctacatcaagatgcttcagtggttgtgtgcactctatgttttcagcttcaagcagactgttaaagtaatcaagaacttgcccacttattacctggtggcgtatagatacatttttcatgggaagcttaaagaggatgtatatgctcgtttctggcagcctgtagctgacattaagaatttagattacaagaaactatccagaagaaagctgaaagtattacaagagttaatattggagaagtaccttgattttgtggaatcaatatggccatattattgcagagcaatcagattcttaaagagggctaatctcatttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

328

Amino Acids

37.04

Weight (kDa)

9.1

Isoelectric Point (pI)

33.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005312)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63050 AT5G63050
fragaria_vesca	FvH4_5g05630
malus_domestica	MD06G1170900.v1.1 MD14G1176600.v1.1
prunus_persica	Prupe.5G170500_v2.0.a1 Prupe.5G170500_v2.0.a1
pyrus_communis	pycom06g15240 pycom14g14750
rosa_chinensis	RchiOBHm_Chr7g0193181
rosa_laevigata	RLG00000004289 RLG00000022163 RLG00000026387
rosa_multiflora	Rmu_ssc0000092.1_g000029
rosa_roxburghii	Rroxscaffold_2G00079190 Rroxscaffold_3G00262310 Rroxscaffold_6G00395460
rosa_rugosa	Rorug02G0253700 Rorug02G0565700 Rorug07G0008100
rosa_samantha	Rh2AG645800 Rh2BG656500 Rh2CG621600 Rh2DG669900 Rh7AG133500 Rh7BG134500 Rh7CG137400 Rh7DG135500
rosa_wichuraiana	Rw7G011410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	71
AccB1I	GGYRCC	1 cut(s)	608
AccI	GTMKAC	1 cut(s)	423
AciI	CCGC	1 cut(s)	284
AclWI	GGATC	4 cut(s)	238, 269, 282, 295
AcoI	YGGCCR	1 cut(s)	935
AcsI	RAATTY	3 cut(s)	115, 247, 844
AcuI	CTGAAG	2 cut(s)	348, 668
AcyI	GRCGYC	1 cut(s)	609
AfaI	GTAC	2 cut(s)	584, 911
AfiI	CCNNNNNNNGG	2 cut(s)	149, 284
AgsI	TTSAA	4 cut(s)	110, 187, 621, 718
AjnI	CCWGG	4 cut(s)	75, 294, 585, 759
AluBI	AGCT	6 cut(s)	238, 665, 714, 793, 833, 877
AluI	AGCT	6 cut(s)	238, 665, 714, 793, 833, 877
Alw21I	GWGCWC	1 cut(s)	700
Alw26I	GTCTC	2 cut(s)	15, 473
Alw44I	GTGCAC	1 cut(s)	696
AlwI	GGATC	4 cut(s)	238, 269, 282, 295
AlwNI	CAGNNNCTG	1 cut(s)	470
AoxI	GGCC	2 cut(s)	78, 935
ApaLI	GTGCAC	1 cut(s)	696
ApeKI	GCWGC	2 cut(s)	662, 823
ApoI	RAATTY	3 cut(s)	115, 247, 844
Asp700I	GAANNNNTTC	1 cut(s)	403
AspLEI	GCGC	1 cut(s)	611
AspS9I	GGNCC	2 cut(s)	152, 650
AsuHPI	GGTGA	2 cut(s)	425, 469
AvaII	GGWCC	2 cut(s)	152, 650
BaeGI	GKGCMC	1 cut(s)	700
BalI	TGGCCA	1 cut(s)	937
BamHI	GGATCC	1 cut(s)	274
BanI	GGYRCC	1 cut(s)	608
BarI	GAAGNNNNNNTAC	2 cut(s)	334, 366
Bbv12I	GWGCWC	1 cut(s)	700
BbvI	GCAGC	2 cut(s)	674, 835
BccI	CCATC	3 cut(s)	49, 494, 508
BciT130I	CCWGG	4 cut(s)	77, 296, 587, 761
BciVI	GTATCC	1 cut(s)	79
BcoDI	GTCTC	2 cut(s)	15, 473
BfmI	CTRYAG	1 cut(s)	828
BfoI	RGCGCY	1 cut(s)	612
BfuI	GTATCC	1 cut(s)	79
BisI	GCNGC	2 cut(s)	663, 824
BlsI	GCNGC	2 cut(s)	664, 825
Bme1390I	CCNGG	4 cut(s)	77, 296, 587, 761
Bme18I	GGWCC	2 cut(s)	152, 650
BmgT120I	GGNCC	2 cut(s)	152, 650
BmiI	GGNNCC	4 cut(s)	276, 610, 651, 652
BmrFI	CCNGG	4 cut(s)	77, 296, 587, 761
BmsI	GCATC	2 cut(s)	356, 669
BpmI	CTGGAG	1 cut(s)	234
BsaHI	GRCGYC	1 cut(s)	609
BsaJI	CCNNGG	1 cut(s)	294
Bsc4I	CCNNNNNNNGG	2 cut(s)	149, 284
Bse3DI	GCAATG	2 cut(s)	199, 657
BseBI	CCWGG	4 cut(s)	77, 296, 587, 761
BseDI	CCNNGG	1 cut(s)	294
BseGI	GGATG	4 cut(s)	106, 519, 573, 808
BseLI	CCNNNNNNNGG	2 cut(s)	149, 284
BseMI	GCAATG	2 cut(s)	199, 657
BseMII	CTCAG	2 cut(s)	462, 547
BseRI	GAGGAG	2 cut(s)	438, 506
BseSI	GKGCMC	1 cut(s)	700
BseXI	GCAGC	2 cut(s)	674, 835
BsgI	GTGCAG	1 cut(s)	544
BshFI	GGCC	2 cut(s)	80, 937
BshNI	GGYRCC	1 cut(s)	608
BsiHKAI	GWGCWC	1 cut(s)	700
BslFI	GGGAC	1 cut(s)	663
BslI	CCNNNNNNNGG	2 cut(s)	149, 284
BsmAI	GTCTC	2 cut(s)	15, 473
BsmFI	GGGAC	1 cut(s)	663
BsmI	GAATGC	2 cut(s)	396, 403
BsnI	GGCC	2 cut(s)	80, 937
Bsp1286I	GDGCHC	1 cut(s)	700
Bsp143I	GATC	3 cut(s)	230, 274, 287
BspACI	CCGC	1 cut(s)	284
BspANI	GGCC	2 cut(s)	80, 937
BspCNI	CTCAG	2 cut(s)	463, 546
BspLI	GGNNCC	4 cut(s)	276, 610, 651, 652
BspPI	GGATC	4 cut(s)	238, 269, 282, 295
BspT107I	GGYRCC	1 cut(s)	608
BsrDI	GCAATG	2 cut(s)	199, 657
BssECI	CCNNGG	1 cut(s)	294
BssMI	GATC	3 cut(s)	230, 274, 287
BssNI	GRCGYC	1 cut(s)	609
Bst2UI	CCWGG	4 cut(s)	77, 296, 587, 761
Bst4CI	ACNGT	2 cut(s)	128, 727
BstACI	GRCGYC	1 cut(s)	609
BstDEI	CTNAG	4 cut(s)	243, 471, 509, 533
BstEII	GGTNACC	1 cut(s)	35
BstF5I	GGATG	4 cut(s)	106, 519, 573, 808
BstH2I	RGCGCY	1 cut(s)	612
BstHHI	GCGC	1 cut(s)	611
BstKTI	GATC	3 cut(s)	233, 277, 290
BstMAI	GTCTC	2 cut(s)	15, 473
BstMBI	GATC	3 cut(s)	230, 274, 287
BstMWI	GCNNNNNNNGC	2 cut(s)	329, 400
BstNI	CCWGG	4 cut(s)	77, 296, 587, 761
BstPI	GGTNACC	1 cut(s)	35
BstSCI	CCNGG	4 cut(s)	75, 294, 585, 759
BstSFI	CTRYAG	1 cut(s)	828
BstSLI	GKGCMC	1 cut(s)	700
BstV1I	GCAGC	2 cut(s)	674, 835
BstX2I	RGATCY	2 cut(s)	274, 287
BstYI	RGATCY	2 cut(s)	274, 287
BsuI	GTATCC	1 cut(s)	79
BsuRI	GGCC	2 cut(s)	80, 937
BtsCI	GGATG	4 cut(s)	106, 519, 573, 808
BtsI	GCAGTG	1 cut(s)	597
BtsIMutI	CAGTG	3 cut(s)	133, 597, 692
CaiI	CAGNNNCTG	1 cut(s)	470
CfoI	GCGC	1 cut(s)	611
Cfr13I	GGNCC	2 cut(s)	152, 650
CsiI	ACCWGGT	1 cut(s)	759
Csp6I	GTAC	2 cut(s)	583, 910
CviAII	CATG	4 cut(s)	88, 145, 476, 785
CviQI	GTAC	2 cut(s)	583, 910
DdeI	CTNAG	4 cut(s)	243, 471, 509, 533
DinI	GGCGCC	1 cut(s)	610
DpnI	GATC	3 cut(s)	232, 276, 289
DpnII	GATC	3 cut(s)	230, 274, 287
DrdI	GACNNNNNNGTC	1 cut(s)	71
DseDI	GACNNNNNNGTC	1 cut(s)	71
EaeI	YGGCCR	1 cut(s)	935
Eco147I	AGGCCT	1 cut(s)	80
Eco32I	GATATC	2 cut(s)	307, 462
Eco47I	GGWCC	2 cut(s)	152, 650
Eco57I	CTGAAG	2 cut(s)	348, 668
Eco91I	GGTNACC	1 cut(s)	35
EcoO109I	RGGNCCY	1 cut(s)	650
EcoO65I	GGTNACC	1 cut(s)	35
EcoRI	GAATTC	1 cut(s)	247
EcoRII	CCWGG	4 cut(s)	75, 294, 585, 759
EcoRV	GATATC	2 cut(s)	307, 462
EgeI	GGCGCC	1 cut(s)	610
EheI	GGCGCC	1 cut(s)	610
FaeI	CATG	4 cut(s)	91, 148, 479, 788
FalI	AAGNNNNNCTT	2 cut(s)	545, 577
FaqI	GGGAC	1 cut(s)	663
FatI	CATG	4 cut(s)	87, 144, 475, 784
FauI	CCCGC	1 cut(s)	277
FblI	GTMKAC	1 cut(s)	423
Fnu4HI	GCNGC	2 cut(s)	663, 824
FokI	GGATG	4 cut(s)	113, 526, 560, 815
Fsp4HI	GCNGC	2 cut(s)	663, 824
GlaI	GCGC	1 cut(s)	610
GluI	GCNGC	2 cut(s)	663, 824
GsuI	CTGGAG	1 cut(s)	234
HaeII	RGCGCY	1 cut(s)	612
HaeIII	GGCC	2 cut(s)	80, 937
HhaI	GCGC	1 cut(s)	611
Hin1I	GRCGYC	1 cut(s)	609
Hin1II	CATG	4 cut(s)	91, 148, 479, 788
Hin6I	GCGC	1 cut(s)	609
HinP1I	GCGC	1 cut(s)	609
HincII	GTYRAC	1 cut(s)	630
HindII	GTYRAC	1 cut(s)	630
HindIII	AAGCTT	2 cut(s)	236, 791
HinfI	GANTC	3 cut(s)	481, 926, 960
HpaI	GTTAAC	1 cut(s)	630
HphI	GGTGA	2 cut(s)	425, 469
Hpy166II	GTNNAC	4 cut(s)	152, 424, 630, 698
Hpy188I	TCNGA	4 cut(s)	328, 398, 466, 959
Hpy188III	TCNNGA	4 cut(s)	213, 676, 739, 867
Hpy8I	GTNNAC	4 cut(s)	152, 424, 630, 698
HpyAV	CCTTC	2 cut(s)	193, 664
HpyCH4III	ACNGT	2 cut(s)	128, 727
HpyCH4IV	ACGT	1 cut(s)	66
HpyCH4V	TGCA	6 cut(s)	50, 347, 525, 662, 698, 948
HpyF10VI	GCNNNNNNNGC	2 cut(s)	329, 400
HpyF3I	CTNAG	4 cut(s)	243, 471, 509, 533
HpySE526I	ACGT	1 cut(s)	66
Hsp92I	GRCGYC	1 cut(s)	609
Hsp92II	CATG	4 cut(s)	91, 148, 479, 788
HspAI	GCGC	1 cut(s)	609
KasI	GGCGCC	1 cut(s)	608
KflI	GGGWCCC	1 cut(s)	650
KspAI	GTTAAC	1 cut(s)	630
Kzo9I	GATC	3 cut(s)	230, 274, 287
LmnI	GCTCC	2 cut(s)	91, 399
Lsp1109I	GCAGC	2 cut(s)	674, 835
LweI	GCATC	2 cut(s)	356, 669
MabI	ACCWGGT	1 cut(s)	759
MaeII	ACGT	1 cut(s)	66
MaeIII	GTNAC	2 cut(s)	35, 62
MalI	GATC	3 cut(s)	232, 276, 289
MboI	GATC	3 cut(s)	230, 274, 287
MboII	GAAGA	4 cut(s)	342, 452, 562, 882
MflI	RGATCY	2 cut(s)	274, 287
MhlI	GDGCHC	1 cut(s)	700
MlsI	TGGCCA	1 cut(s)	937
MluCI	AATT	3 cut(s)	115, 247, 844
MluNI	TGGCCA	1 cut(s)	937
Mly113I	GGCGCC	1 cut(s)	609
MlyI	GAGTC	1 cut(s)	475
MnlI	CCTC	9 cut(s)	209, 265, 334, 456, 459, 484, 589, 793, 963
Mox20I	TGGCCA	1 cut(s)	937
MroXI	GAANNNNTTC	1 cut(s)	403
MscI	TGGCCA	1 cut(s)	937
MseI	TTAA	8 cut(s)	162, 375, 629, 729, 795, 840, 896, 965
MslI	CAYNNNNRTG	1 cut(s)	677
Msp20I	TGGCCA	1 cut(s)	937
MspR9I	CCNGG	4 cut(s)	77, 296, 587, 761
Mva1269I	GAATGC	2 cut(s)	396, 403
MvaI	CCWGG	4 cut(s)	77, 296, 587, 761
MwoI	GCNNNNNNNGC	2 cut(s)	329, 400
NarI	GGCGCC	1 cut(s)	609
NdeII	GATC	3 cut(s)	230, 274, 287
NlaIII	CATG	4 cut(s)	91, 148, 479, 788
NlaIV	GGNNCC	4 cut(s)	276, 610, 651, 652
NmuCI	GTSAC	1 cut(s)	62
PceI	AGGCCT	1 cut(s)	80
PcsI	WCGNNNNNNNCGW	1 cut(s)	63
PctI	GAATGC	2 cut(s)	396, 403
PdmI	GAANNNNTTC	1 cut(s)	403
PfeI	GAWTC	2 cut(s)	926, 960
PkrI	GCNGC	2 cut(s)	664, 825
PleI	GAGTC	1 cut(s)	475
PluTI	GGCGCC	1 cut(s)	612
PpsI	GAGTC	1 cut(s)	475
PpuMI	RGGWCCY	1 cut(s)	650
Psp5II	RGGWCCY	1 cut(s)	650
Psp6I	CCWGG	4 cut(s)	75, 294, 585, 759
PspEI	GGTNACC	1 cut(s)	35
PspGI	CCWGG	4 cut(s)	75, 294, 585, 759
PspN4I	GGNNCC	4 cut(s)	276, 610, 651, 652
PspPI	GGNCC	2 cut(s)	152, 650
PspPPI	RGGWCCY	1 cut(s)	650
PstNI	CAGNNNCTG	1 cut(s)	470
PsuI	RGATCY	2 cut(s)	274, 287
RsaI	GTAC	2 cut(s)	584, 911
RsaNI	GTAC	2 cut(s)	583, 910
RseI	CAYNNNNRTG	1 cut(s)	677
SaqAI	TTAA	8 cut(s)	162, 375, 629, 729, 795, 840, 896, 965
SatI	GCNGC	2 cut(s)	663, 824
Sau3AI	GATC	3 cut(s)	230, 274, 287
Sau96I	GGNCC	2 cut(s)	152, 650
SchI	GAGTC	1 cut(s)	475
ScrFI	CCNGG	4 cut(s)	77, 296, 587, 761
SduI	GDGCHC	1 cut(s)	700
SexAI	ACCWGGT	1 cut(s)	759
SfaNI	GCATC	2 cut(s)	356, 669
SfcI	CTRYAG	1 cut(s)	828
SfoI	GGCGCC	1 cut(s)	610
SinI	GGWCC	2 cut(s)	152, 650
SmiMI	CAYNNNNRTG	1 cut(s)	677
Sse9I	AATT	3 cut(s)	115, 247, 844
SseBI	AGGCCT	1 cut(s)	80
SsiI	CCGC	1 cut(s)	284
SspDI	GGCGCC	1 cut(s)	608
SspI	AATATT	1 cut(s)	900
StuI	AGGCCT	1 cut(s)	80
StyD4I	CCNGG	4 cut(s)	75, 294, 585, 759
TaaI	ACNGT	2 cut(s)	128, 727
TaiI	ACGT	1 cut(s)	69
TasI	AATT	3 cut(s)	115, 247, 844
TfiI	GAWTC	2 cut(s)	926, 960
Tru1I	TTAA	8 cut(s)	162, 375, 629, 729, 795, 840, 896, 965
Tru9I	TTAA	8 cut(s)	162, 375, 629, 729, 795, 840, 896, 965
TscAI	CASTG	3 cut(s)	133, 597, 692
TseFI	GTSAC	1 cut(s)	62
TseI	GCWGC	2 cut(s)	662, 823
Tsp45I	GTSAC	1 cut(s)	62
TspDTI	ATGAA	5 cut(s)	117, 396, 562, 646, 773
TspGWI	ACGGA	1 cut(s)	61
TspRI	CASTG	3 cut(s)	133, 597, 692
VneI	GTGCAC	1 cut(s)	696
VpaK11BI	GGWCC	2 cut(s)	152, 650
XapI	RAATTY	3 cut(s)	115, 247, 844
XcmI	CCANNNNNNNNNTGG	1 cut(s)	757
XmiI	GTMKAC	1 cut(s)	423
XmnI	GAANNNNTTC	1 cut(s)	403

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.