Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0005312

Physical Location & Seq

Genomic Coordinates Forward (+)

10027120 .. 10029984

Gene Structure 2865 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG134500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGCGTGGACCAAAACTTAAACCATTGAGAGTTTCAGCCTTCAAGGGCAATGCCCAGAATGATAAATCTGGAGGTAGAAAAGGTGGATCAAAGCTTCCTAAGAATTCAGTCAAACTAAAAGAGAATGAGGATACCAAAGCGGGATCTCCCCAGGCAAATGATATCCCTATTTCCTATGCCTCTGAAGCAAATGAGAGTATTGCATCTTCCCCTGCTATACATAATCTGTTTAAGAAATGGTTGAGAATGCTCCGAACGCATTCATCAGGTGAAGTAGTAGACGGGATTTTGGGAGAAGAACCTCCTCAAAAGGTGATATCAGAAACTGAGCATGAGACTCAAAACGAGGAGAGAGATGGTATTCTAAGGATGGTTTGGTGCAGTTTTCTCAGTCTAAATGCTACAATAAAGATACCCTTGCTTATCTTCATCCCCTCGTACCTGGCAGTGAATATACTTTATGGCGCTGAAGTTTCAAAGGAGTTAACTCCTTTGTGGGTTCTGGGACCCTTCATTGCAGCTCTCTACATCAAGATGCTTCAGTGGTTGTGTGCGCTCTATGTTTTCAGCTTTAAGCAGACTGTTAAAGTAATCAAGAACTTGCCCACTTATTACCTGGTGGCGTATAGATACATTTTTCATGGGAAGCTTAAAGAGGATGTATATGCTCGTTTCTGGCAACCTGTAGTTGACATTAAGAATTTAGATTACAAGAAACTGTCCAGAAGAAAGCTGAAAGTATTACAAGAGTTAATAGTGGAGAAGTACCTTGATTTTGTGGAATCAATATGGCCATATTATTGCAGAGCAATCAGATTCTTAAAGAGGGCTAATCTCATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

280

Amino Acids

32.14

Weight (kDa)

9.58

Isoelectric Point (pI)

34.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005312)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63050 AT5G63050
fragaria_vesca	FvH4_5g05630
malus_domestica	MD06G1170900.v1.1 MD14G1176600.v1.1
prunus_persica	Prupe.5G170500_v2.0.a1 Prupe.5G170500_v2.0.a1
pyrus_communis	pycom06g15240 pycom14g14750
rosa_chinensis	RchiOBHm_Chr7g0193181
rosa_laevigata	RLG00000004289 RLG00000022163 RLG00000026387
rosa_multiflora	Rmu_ssc0000092.1_g000029
rosa_roxburghii	Rroxscaffold_2G00079190 Rroxscaffold_3G00262310 Rroxscaffold_6G00395460
rosa_rugosa	Rorug02G0253700 Rorug02G0565700 Rorug07G0008100
rosa_samantha	Rh2AG645800 Rh2BG656500 Rh2CG621600 Rh2DG669900 Rh7AG133500 Rh7BG134500 Rh7CG137400 Rh7DG135500
rosa_wichuraiana	Rw7G011410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	279
AciI	CCGC	1 cut(s)	140
AclWI	GGATC	2 cut(s)	94, 151
AcoI	YGGCCR	1 cut(s)	791
AcsI	RAATTY	2 cut(s)	103, 700
AcuI	CTGAAG	3 cut(s)	204, 489, 524
AfaI	GTAC	2 cut(s)	440, 767
AgsI	TTSAA	2 cut(s)	43, 477
AjnI	CCWGG	3 cut(s)	150, 441, 615
AluBI	AGCT	5 cut(s)	94, 521, 570, 649, 733
AluI	AGCT	5 cut(s)	94, 521, 570, 649, 733
Alw26I	GTCTC	1 cut(s)	329
AlwI	GGATC	2 cut(s)	94, 151
AlwNI	CAGNNNCTG	1 cut(s)	326
AoxI	GGCC	1 cut(s)	791
ApeKI	GCWGC	1 cut(s)	518
ApoI	RAATTY	2 cut(s)	103, 700
Asp700I	GAANNNNTTC	1 cut(s)	259
AspLEI	GCGC	2 cut(s)	467, 556
AspS9I	GGNCC	2 cut(s)	8, 506
AsuHPI	GGTGA	2 cut(s)	281, 325
AvaII	GGWCC	2 cut(s)	8, 506
BalI	TGGCCA	1 cut(s)	793
BarI	GAAGNNNNNNTAC	2 cut(s)	190, 222
BbvI	GCAGC	1 cut(s)	530
BccI	CCATC	2 cut(s)	350, 364
BciT130I	CCWGG	3 cut(s)	152, 443, 617
BciVI	GTATCC	1 cut(s)	124
BcoDI	GTCTC	1 cut(s)	329
BfmI	CTRYAG	1 cut(s)	684
BfoI	RGCGCY	1 cut(s)	468
BfuI	GTATCC	1 cut(s)	124
BisI	GCNGC	1 cut(s)	519
BlsI	GCNGC	1 cut(s)	520
Bme1390I	CCNGG	3 cut(s)	152, 443, 617
Bme18I	GGWCC	2 cut(s)	8, 506
BmgT120I	GGNCC	2 cut(s)	8, 506
BmiI	GGNNCC	2 cut(s)	507, 508
BmrFI	CCNGG	3 cut(s)	152, 443, 617
BmsI	GCATC	2 cut(s)	212, 525
BpmI	CTGGAG	1 cut(s)	90
BsaJI	CCNNGG	1 cut(s)	150
Bse3DI	GCAATG	2 cut(s)	55, 513
BseBI	CCWGG	3 cut(s)	152, 443, 617
BseDI	CCNNGG	1 cut(s)	150
BseGI	GGATG	3 cut(s)	375, 429, 664
BseMI	GCAATG	2 cut(s)	55, 513
BseMII	CTCAG	2 cut(s)	318, 403
BseRI	GAGGAG	2 cut(s)	294, 362
BseXI	GCAGC	1 cut(s)	530
BsgI	GTGCAG	1 cut(s)	400
BshFI	GGCC	1 cut(s)	793
BslFI	GGGAC	1 cut(s)	519
BsmAI	GTCTC	1 cut(s)	329
BsmFI	GGGAC	1 cut(s)	519
BsmI	GAATGC	2 cut(s)	252, 259
BsnI	GGCC	1 cut(s)	793
Bsp143I	GATC	2 cut(s)	86, 143
BspACI	CCGC	1 cut(s)	140
BspANI	GGCC	1 cut(s)	793
BspCNI	CTCAG	2 cut(s)	319, 402
BspLI	GGNNCC	2 cut(s)	507, 508
BspPI	GGATC	2 cut(s)	94, 151
BsrDI	GCAATG	2 cut(s)	55, 513
BssECI	CCNNGG	1 cut(s)	150
BssMI	GATC	2 cut(s)	86, 143
Bst2UI	CCWGG	3 cut(s)	152, 443, 617
Bst4CI	ACNGT	2 cut(s)	583, 720
BstDEI	CTNAG	4 cut(s)	99, 327, 365, 389
BstF5I	GGATG	3 cut(s)	375, 429, 664
BstH2I	RGCGCY	1 cut(s)	468
BstHHI	GCGC	2 cut(s)	467, 556
BstKTI	GATC	2 cut(s)	89, 146
BstMAI	GTCTC	1 cut(s)	329
BstMBI	GATC	2 cut(s)	86, 143
BstMWI	GCNNNNNNNGC	2 cut(s)	185, 256
BstNI	CCWGG	3 cut(s)	152, 443, 617
BstSCI	CCNGG	3 cut(s)	150, 441, 615
BstSFI	CTRYAG	1 cut(s)	684
BstV1I	GCAGC	1 cut(s)	530
BstX2I	RGATCY	1 cut(s)	143
BstYI	RGATCY	1 cut(s)	143
BsuI	GTATCC	1 cut(s)	124
BsuRI	GGCC	1 cut(s)	793
BtsCI	GGATG	3 cut(s)	375, 429, 664
BtsI	GCAGTG	1 cut(s)	453
BtsIMutI	CAGTG	2 cut(s)	453, 548
CaiI	CAGNNNCTG	1 cut(s)	326
CfoI	GCGC	2 cut(s)	467, 556
Cfr13I	GGNCC	2 cut(s)	8, 506
CsiI	ACCWGGT	1 cut(s)	615
Csp6I	GTAC	2 cut(s)	439, 766
CviAII	CATG	2 cut(s)	332, 641
CviJI	RGCY	8 cut(s)	38, 94, 521, 570, 649, 733, 793, 830
CviKI_1	RGCY	8 cut(s)	38, 94, 521, 570, 649, 733, 793, 830
CviQI	GTAC	2 cut(s)	439, 766
DdeI	CTNAG	4 cut(s)	99, 327, 365, 389
DpnI	GATC	2 cut(s)	88, 145
DpnII	GATC	2 cut(s)	86, 143
EaeI	YGGCCR	1 cut(s)	791
Eco32I	GATATC	2 cut(s)	163, 318
Eco47I	GGWCC	2 cut(s)	8, 506
Eco57I	CTGAAG	3 cut(s)	204, 489, 524
EcoO109I	RGGNCCY	1 cut(s)	506
EcoRI	GAATTC	1 cut(s)	103
EcoRII	CCWGG	3 cut(s)	150, 441, 615
EcoRV	GATATC	2 cut(s)	163, 318
FaeI	CATG	2 cut(s)	335, 644
FalI	AAGNNNNNCTT	2 cut(s)	401, 433
FaqI	GGGAC	1 cut(s)	519
FatI	CATG	2 cut(s)	331, 640
FauI	CCCGC	1 cut(s)	133
FblI	GTMKAC	1 cut(s)	279
Fnu4HI	GCNGC	1 cut(s)	519
FokI	GGATG	3 cut(s)	382, 416, 671
Fsp4HI	GCNGC	1 cut(s)	519
GlaI	GCGC	2 cut(s)	466, 555
GluI	GCNGC	1 cut(s)	519
GsuI	CTGGAG	1 cut(s)	90
HaeII	RGCGCY	1 cut(s)	468
HaeIII	GGCC	1 cut(s)	793
HhaI	GCGC	2 cut(s)	467, 556
Hin1II	CATG	2 cut(s)	335, 644
Hin6I	GCGC	2 cut(s)	465, 554
HinP1I	GCGC	2 cut(s)	465, 554
HincII	GTYRAC	2 cut(s)	486, 691
HindII	GTYRAC	2 cut(s)	486, 691
HindIII	AAGCTT	2 cut(s)	92, 647
HinfI	GANTC	3 cut(s)	337, 782, 816
HpaI	GTTAAC	1 cut(s)	486
HphI	GGTGA	2 cut(s)	281, 325
Hpy166II	GTNNAC	4 cut(s)	8, 280, 486, 691
Hpy188I	TCNGA	4 cut(s)	184, 254, 322, 815
Hpy188III	TCNNGA	4 cut(s)	69, 532, 595, 723
Hpy8I	GTNNAC	4 cut(s)	8, 280, 486, 691
HpyAV	CCTTC	2 cut(s)	49, 520
HpyCH4III	ACNGT	2 cut(s)	583, 720
HpyCH4V	TGCA	4 cut(s)	203, 381, 518, 804
HpyF10VI	GCNNNNNNNGC	2 cut(s)	185, 256
HpyF3I	CTNAG	4 cut(s)	99, 327, 365, 389
Hsp92II	CATG	2 cut(s)	335, 644
HspAI	GCGC	2 cut(s)	465, 554
KflI	GGGWCCC	1 cut(s)	506
KspAI	GTTAAC	1 cut(s)	486
Kzo9I	GATC	2 cut(s)	86, 143
LmnI	GCTCC	1 cut(s)	255
Lsp1109I	GCAGC	1 cut(s)	530
LweI	GCATC	2 cut(s)	212, 525
MabI	ACCWGGT	1 cut(s)	615
MalI	GATC	2 cut(s)	88, 145
MboI	GATC	2 cut(s)	86, 143
MboII	GAAGA	4 cut(s)	198, 308, 418, 738
MflI	RGATCY	1 cut(s)	143
MlsI	TGGCCA	1 cut(s)	793
MluCI	AATT	2 cut(s)	103, 700
MluNI	TGGCCA	1 cut(s)	793
MlyI	GAGTC	1 cut(s)	331
MnlI	CCTC	9 cut(s)	65, 121, 190, 312, 315, 340, 445, 649, 819
Mox20I	TGGCCA	1 cut(s)	793
MroXI	GAANNNNTTC	1 cut(s)	259
MscI	TGGCCA	1 cut(s)	793
MseI	TTAA	9 cut(s)	18, 231, 485, 573, 585, 651, 696, 752, 821
MslI	CAYNNNNRTG	1 cut(s)	533
Msp20I	TGGCCA	1 cut(s)	793
MspR9I	CCNGG	3 cut(s)	152, 443, 617
Mva1269I	GAATGC	2 cut(s)	252, 259
MvaI	CCWGG	3 cut(s)	152, 443, 617
MwoI	GCNNNNNNNGC	2 cut(s)	185, 256
NdeII	GATC	2 cut(s)	86, 143
NlaIII	CATG	2 cut(s)	335, 644
NlaIV	GGNNCC	2 cut(s)	507, 508
PctI	GAATGC	2 cut(s)	252, 259
PdmI	GAANNNNTTC	1 cut(s)	259
PfeI	GAWTC	2 cut(s)	782, 816
PkrI	GCNGC	1 cut(s)	520
PleI	GAGTC	1 cut(s)	331
PpsI	GAGTC	1 cut(s)	331
PpuMI	RGGWCCY	1 cut(s)	506
Psp5II	RGGWCCY	1 cut(s)	506
Psp6I	CCWGG	3 cut(s)	150, 441, 615
PspGI	CCWGG	3 cut(s)	150, 441, 615
PspN4I	GGNNCC	2 cut(s)	507, 508
PspPI	GGNCC	2 cut(s)	8, 506
PspPPI	RGGWCCY	1 cut(s)	506
PstNI	CAGNNNCTG	1 cut(s)	326
PsuI	RGATCY	1 cut(s)	143
RsaI	GTAC	2 cut(s)	440, 767
RsaNI	GTAC	2 cut(s)	439, 766
RseI	CAYNNNNRTG	1 cut(s)	533
SaqAI	TTAA	9 cut(s)	18, 231, 485, 573, 585, 651, 696, 752, 821
SatI	GCNGC	1 cut(s)	519
Sau3AI	GATC	2 cut(s)	86, 143
Sau96I	GGNCC	2 cut(s)	8, 506
SchI	GAGTC	1 cut(s)	331
ScrFI	CCNGG	3 cut(s)	152, 443, 617
SexAI	ACCWGGT	1 cut(s)	615
SfaNI	GCATC	2 cut(s)	212, 525
SfcI	CTRYAG	1 cut(s)	684
SinI	GGWCC	2 cut(s)	8, 506
SmiMI	CAYNNNNRTG	1 cut(s)	533
Sse9I	AATT	2 cut(s)	103, 700
SsiI	CCGC	1 cut(s)	140
StyD4I	CCNGG	3 cut(s)	150, 441, 615
TaaI	ACNGT	2 cut(s)	583, 720
TasI	AATT	2 cut(s)	103, 700
TfiI	GAWTC	2 cut(s)	782, 816
Tru1I	TTAA	9 cut(s)	18, 231, 485, 573, 585, 651, 696, 752, 821
Tru9I	TTAA	9 cut(s)	18, 231, 485, 573, 585, 651, 696, 752, 821
TscAI	CASTG	2 cut(s)	453, 548
TseI	GCWGC	1 cut(s)	518
TspDTI	ATGAA	4 cut(s)	252, 418, 502, 629
TspRI	CASTG	2 cut(s)	453, 548
VpaK11BI	GGWCC	2 cut(s)	8, 506
XapI	RAATTY	2 cut(s)	103, 700
XcmI	CCANNNNNNNNNTGG	1 cut(s)	613
XmiI	GTMKAC	1 cut(s)	279
XmnI	GAANNNNTTC	1 cut(s)	259

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.