Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0005312

Physical Location & Seq

Genomic Coordinates Reverse (-)

56335209 .. 56338048

Gene Structure 2840 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00262310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGCATTGGTTACCCATCAAATGCAGGGTTCGTTTGTGACATATCCGTCCAGGCCTTTGTCATGGAGCAAGGGGATGAAGTTGAAGCGGTGTGTAACAACACTTCACATTGTTGGGAGAACAGAGAGTTGCTCTATTATAAAGCACAATATTTGTTTCAGTGTAGGGGCTTCTCCCATGCGTGGACCAAAACTTAAACCATTGAGAGTTTCGGCCTTCAAGGGCAATGCCCAGAATGATAAATCTGGAGGTAGAAAAGGTGGATCAAAGCTACCTAAGAATTCAGTCAAACTAAAAGAGAATGAGGATACCAAAGCGGGATCTCCCCAGGCAAATGATATCCCTATTTCCTATGCCTCTGAAGCAAATGAGAGTATTGCATCTTCCCCTGCCATACATAATCTGTTTAAGAAATGGTTGAGAATGCTCCGAACACATTCATCAGGTGAAGTAGTAGACGGGATTTTGGGAGAAGAACCCCCCAAAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

163

Amino Acids

17.76

Weight (kDa)

10.06

Isoelectric Point (pI)

44.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005312)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63050 AT5G63050
fragaria_vesca	FvH4_5g05630
malus_domestica	MD06G1170900.v1.1 MD14G1176600.v1.1
prunus_persica	Prupe.5G170500_v2.0.a1 Prupe.5G170500_v2.0.a1
pyrus_communis	pycom06g15240 pycom14g14750
rosa_chinensis	RchiOBHm_Chr7g0193181
rosa_laevigata	RLG00000004289 RLG00000022163 RLG00000026387
rosa_multiflora	Rmu_ssc0000092.1_g000029
rosa_roxburghii	Rroxscaffold_2G00079190 Rroxscaffold_3G00262310 Rroxscaffold_6G00395460
rosa_rugosa	Rorug02G0253700 Rorug02G0565700 Rorug07G0008100
rosa_samantha	Rh2AG645800 Rh2BG656500 Rh2CG621600 Rh2DG669900 Rh7AG133500 Rh7BG134500 Rh7CG137400 Rh7DG135500
rosa_wichuraiana	Rw7G011410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	140
AasI	GACNNNNNNGTC	1 cut(s)	46
AccI	GTMKAC	1 cut(s)	456
AciI	CCGC	2 cut(s)	88, 317
AclWI	GGATC	2 cut(s)	271, 328
AcsI	RAATTY	1 cut(s)	280
AcuI	CTGAAG	1 cut(s)	381
AfiI	CCNNNNNNNGG	2 cut(s)	182, 486
AgsI	TTSAA	2 cut(s)	85, 220
AjnI	CCWGG	2 cut(s)	50, 327
AluBI	AGCT	1 cut(s)	271
AluI	AGCT	1 cut(s)	271
AlwI	GGATC	2 cut(s)	271, 328
AoxI	GGCC	2 cut(s)	53, 213
ApoI	RAATTY	1 cut(s)	280
Asp700I	GAANNNNTTC	1 cut(s)	436
AspS9I	GGNCC	1 cut(s)	185
AsuHPI	GGTGA	1 cut(s)	458
AvaII	GGWCC	1 cut(s)	185
BarI	GAAGNNNNNNTAC	4 cut(s)	87, 119, 367, 399
BccI	CCATC	1 cut(s)	24
BciT130I	CCWGG	2 cut(s)	52, 329
BciVI	GTATCC	1 cut(s)	301
BfuI	GTATCC	1 cut(s)	301
Bme1390I	CCNGG	2 cut(s)	52, 329
Bme18I	GGWCC	1 cut(s)	185
BmgT120I	GGNCC	1 cut(s)	185
BmrFI	CCNGG	2 cut(s)	52, 329
BmsI	GCATC	1 cut(s)	389
BplI	GAGNNNNNCTC	2 cut(s)	116, 148
BpmI	CTGGAG	1 cut(s)	267
BsaJI	CCNNGG	1 cut(s)	327
Bsc4I	CCNNNNNNNGG	2 cut(s)	182, 486
Bse3DI	GCAATG	1 cut(s)	232
BseBI	CCWGG	2 cut(s)	52, 329
BseDI	CCNNGG	1 cut(s)	327
BseGI	GGATG	1 cut(s)	81
BseLI	CCNNNNNNNGG	2 cut(s)	182, 486
BseMI	GCAATG	1 cut(s)	232
BshFI	GGCC	2 cut(s)	55, 215
BslI	CCNNNNNNNGG	2 cut(s)	182, 486
BsmI	GAATGC	1 cut(s)	429
BsnI	GGCC	2 cut(s)	55, 215
Bsp143I	GATC	2 cut(s)	263, 320
BspACI	CCGC	2 cut(s)	88, 317
BspANI	GGCC	2 cut(s)	55, 215
BspPI	GGATC	2 cut(s)	271, 328
BsrDI	GCAATG	1 cut(s)	232
BssECI	CCNNGG	1 cut(s)	327
BssMI	GATC	2 cut(s)	263, 320
Bst2UI	CCWGG	2 cut(s)	52, 329
BstDEI	CTNAG	1 cut(s)	276
BstEII	GGTNACC	1 cut(s)	10
BstF5I	GGATG	1 cut(s)	81
BstKTI	GATC	2 cut(s)	266, 323
BstMBI	GATC	2 cut(s)	263, 320
BstMWI	GCNNNNNNNGC	1 cut(s)	362
BstNI	CCWGG	2 cut(s)	52, 329
BstPI	GGTNACC	1 cut(s)	10
BstSCI	CCNGG	2 cut(s)	50, 327
BstX2I	RGATCY	1 cut(s)	320
BstYI	RGATCY	1 cut(s)	320
BsuI	GTATCC	1 cut(s)	301
BsuRI	GGCC	2 cut(s)	55, 215
BtsCI	GGATG	1 cut(s)	81
BtsIMutI	CAGTG	1 cut(s)	166
Cfr13I	GGNCC	1 cut(s)	185
CviAII	CATG	2 cut(s)	63, 178
CviJI	RGCY	4 cut(s)	55, 170, 215, 271
CviKI_1	RGCY	4 cut(s)	55, 170, 215, 271
DdeI	CTNAG	1 cut(s)	276
DpnI	GATC	2 cut(s)	265, 322
DpnII	GATC	2 cut(s)	263, 320
DrdI	GACNNNNNNGTC	1 cut(s)	46
DseDI	GACNNNNNNGTC	1 cut(s)	46
Eco147I	AGGCCT	1 cut(s)	55
Eco32I	GATATC	1 cut(s)	340
Eco47I	GGWCC	1 cut(s)	185
Eco57I	CTGAAG	1 cut(s)	381
Eco91I	GGTNACC	1 cut(s)	10
EcoO65I	GGTNACC	1 cut(s)	10
EcoRI	GAATTC	1 cut(s)	280
EcoRII	CCWGG	2 cut(s)	50, 327
EcoRV	GATATC	1 cut(s)	340
FaeI	CATG	2 cut(s)	66, 181
FaiI	YATR	7 cut(s)	43, 64, 140, 179, 354, 395, 399
FatI	CATG	2 cut(s)	62, 177
FauI	CCCGC	1 cut(s)	310
FblI	GTMKAC	1 cut(s)	456
FokI	GGATG	1 cut(s)	88
GsuI	CTGGAG	1 cut(s)	267
HaeIII	GGCC	2 cut(s)	55, 215
Hin1II	CATG	2 cut(s)	66, 181
HphI	GGTGA	1 cut(s)	458
Hpy166II	GTNNAC	2 cut(s)	185, 457
Hpy188I	TCNGA	2 cut(s)	361, 431
Hpy188III	TCNNGA	1 cut(s)	246
Hpy8I	GTNNAC	2 cut(s)	185, 457
HpyAV	CCTTC	1 cut(s)	226
HpyCH4V	TGCA	2 cut(s)	25, 380
HpyF10VI	GCNNNNNNNGC	1 cut(s)	362
HpyF3I	CTNAG	1 cut(s)	276
Hsp92II	CATG	2 cut(s)	66, 181
Kzo9I	GATC	2 cut(s)	263, 320
LmnI	GCTCC	2 cut(s)	66, 432
LpnPI	CCDG	9 cut(s)	11, 37, 64, 231, 245, 314, 341, 402, 429
LweI	GCATC	1 cut(s)	389
MaeIII	GTNAC	3 cut(s)	10, 37, 94
MalI	GATC	2 cut(s)	265, 322
MboI	GATC	2 cut(s)	263, 320
MboII	GAAGA	2 cut(s)	375, 485
MflI	RGATCY	1 cut(s)	320
MluCI	AATT	1 cut(s)	280
MnlI	CCTC	3 cut(s)	242, 298, 367
MroXI	GAANNNNTTC	1 cut(s)	436
MseI	TTAA	2 cut(s)	195, 408
MspR9I	CCNGG	2 cut(s)	52, 329
Mva1269I	GAATGC	1 cut(s)	429
MvaI	CCWGG	2 cut(s)	52, 329
MwoI	GCNNNNNNNGC	1 cut(s)	362
NdeII	GATC	2 cut(s)	263, 320
NlaIII	CATG	2 cut(s)	66, 181
NmuCI	GTSAC	1 cut(s)	37
PceI	AGGCCT	1 cut(s)	55
PctI	GAATGC	1 cut(s)	429
PdmI	GAANNNNTTC	1 cut(s)	436
PsiI	TTATAA	1 cut(s)	140
Psp6I	CCWGG	2 cut(s)	50, 327
PspEI	GGTNACC	1 cut(s)	10
PspGI	CCWGG	2 cut(s)	50, 327
PspPI	GGNCC	1 cut(s)	185
PsuI	RGATCY	1 cut(s)	320
SaqAI	TTAA	2 cut(s)	195, 408
Sau3AI	GATC	2 cut(s)	263, 320
Sau96I	GGNCC	1 cut(s)	185
ScrFI	CCNGG	2 cut(s)	52, 329
SetI	ASST	6 cut(s)	253, 262, 273, 277, 448, 491
SfaNI	GCATC	1 cut(s)	389
SinI	GGWCC	1 cut(s)	185
Sse9I	AATT	1 cut(s)	280
SseBI	AGGCCT	1 cut(s)	55
SsiI	CCGC	2 cut(s)	88, 317
SspI	AATATT	1 cut(s)	151
StuI	AGGCCT	1 cut(s)	55
StyD4I	CCNGG	2 cut(s)	50, 327
TasI	AATT	1 cut(s)	280
Tru1I	TTAA	2 cut(s)	195, 408
Tru9I	TTAA	2 cut(s)	195, 408
TscAI	CASTG	1 cut(s)	166
TseFI	GTSAC	1 cut(s)	37
Tsp45I	GTSAC	1 cut(s)	37
TspDTI	ATGAA	2 cut(s)	92, 429
TspGWI	ACGGA	1 cut(s)	36
TspRI	CASTG	1 cut(s)	166
VpaK11BI	GGWCC	1 cut(s)	185
XapI	RAATTY	1 cut(s)	280
XmiI	GTMKAC	1 cut(s)	456
XmnI	GAANNNNTTC	1 cut(s)	436

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.