Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0005312

Physical Location & Seq

Genomic Coordinates Forward (+)

10718410 .. 10721575

Gene Structure 3166 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG133500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGGACTTTTGTATTGAAAACTTTCTTATTATTTCTACTTTTAATAGAAATTTGAGCTTTGTATGTTTTTTGTTTATCGCATTGCAGGGTTCGTTTGTGACGTATCCGTCCAGGCCTTTGTCATGGAGCAAGGGGATGAAGTTGAAGCGGTGTGTAACAACACTTCACATTGTTGGGAGAACAGATAGTTGCTCTATTATAAAGCACAATATTTGTTTCAGTGTAGGGGCTTCTCCCATGCGTGGACCAAAACTTAAACCATTGAGAGTTTCAGCCTTCAAGGGCAATGCCCAGAATGATAAATCTGGAGGTAGAAAAGGTGGATCAAAGCTTCCTAAGAATTCGGTCAAACTAAAAGAGAATGAGGATCCCAAAGCGGGATCTCCCCAGGCAAATGATATCCCTATTTCCTATGCCTCTGAAGCAAATGAGAGTATTGCATCTTCCCTTGCCATACATAATCTGTTTAAGAAATGGTTGAGAATGCTCCGAACGCATTCATCAGGTGAAGTAGTAGACGGGATTTTGGGAGAAGAACCTCCTCAAAAGGTGATATCAGAAACTGAGCATGAGACTCAAAACGAGGAGAGAGATGGTATTCTAAGGATGGTTTGGTGCAGTTTTCTCAGTCTAAATGCTACAATAAAGATACCCTTGCTTATCTTCATCCCCTCGTACCTGGCAGTGAATATACTTTATGGCGCCGAAGTTTCAAAGGAGTTAACTCCTTTGTGGGTTCTGGGACCCTTCATTGCAGCTCTCTACATCAAGATGCTTCAGTGGTTGTGTGCACTCTATGTTTTCAGCTTCAAGCAGACTGTTAAAGTAATCAAGAACTTGCCCACTTATTACCTGGTGGCGTATAGATACATTTTTCATGGGAAGCTTAAAGAGGATGTATATGCTCGTTTCTGGCAGCCTGTAGCTGACATTAAGAATTTAGATTACAAGAAACTATCCAGAAGAAAGCTGAAAGTATTACAAGAGTTAATATTGGAGAAGTACCTTGATTTTGTGGAATCAATATGGCCATATTATTGCAGAGCAATCAGATTCTTAAAGAGGGCTAATCTCATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

359

Amino Acids

41.03

Weight (kDa)

9.57

Isoelectric Point (pI)

36.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005312)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63050 AT5G63050
fragaria_vesca	FvH4_5g05630
malus_domestica	MD06G1170900.v1.1 MD14G1176600.v1.1
prunus_persica	Prupe.5G170500_v2.0.a1 Prupe.5G170500_v2.0.a1
pyrus_communis	pycom06g15240 pycom14g14750
rosa_chinensis	RchiOBHm_Chr7g0193181
rosa_laevigata	RLG00000004289 RLG00000022163 RLG00000026387
rosa_multiflora	Rmu_ssc0000092.1_g000029
rosa_roxburghii	Rroxscaffold_2G00079190 Rroxscaffold_3G00262310 Rroxscaffold_6G00395460
rosa_rugosa	Rorug02G0253700 Rorug02G0565700 Rorug07G0008100
rosa_samantha	Rh2AG645800 Rh2BG656500 Rh2CG621600 Rh2DG669900 Rh7AG133500 Rh7BG134500 Rh7CG137400 Rh7DG135500
rosa_wichuraiana	Rw7G011410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	200
AasI	GACNNNNNNGTC	1 cut(s)	106
AccB1I	GGYRCC	1 cut(s)	701
AccI	GTMKAC	1 cut(s)	516
AciI	CCGC	2 cut(s)	148, 377
AclWI	GGATC	4 cut(s)	331, 362, 375, 388
AcoI	YGGCCR	1 cut(s)	1028
AcsI	RAATTY	3 cut(s)	49, 340, 937
AcuI	CTGAAG	2 cut(s)	441, 761
AcyI	GRCGYC	1 cut(s)	702
AfaI	GTAC	2 cut(s)	677, 1004
AfiI	CCNNNNNNNGG	2 cut(s)	242, 377
AgsI	TTSAA	5 cut(s)	17, 145, 280, 714, 811
AjnI	CCWGG	4 cut(s)	110, 387, 678, 852
AluBI	AGCT	7 cut(s)	57, 331, 758, 807, 886, 926, 970
AluI	AGCT	7 cut(s)	57, 331, 758, 807, 886, 926, 970
Alw21I	GWGCWC	1 cut(s)	793
Alw26I	GTCTC	1 cut(s)	566
Alw44I	GTGCAC	1 cut(s)	789
AlwI	GGATC	4 cut(s)	331, 362, 375, 388
AlwNI	CAGNNNCTG	1 cut(s)	563
AoxI	GGCC	2 cut(s)	113, 1028
ApaLI	GTGCAC	1 cut(s)	789
ApeKI	GCWGC	2 cut(s)	755, 916
ApoI	RAATTY	3 cut(s)	49, 340, 937
Asp700I	GAANNNNTTC	2 cut(s)	21, 496
AspLEI	GCGC	1 cut(s)	704
AspS9I	GGNCC	2 cut(s)	245, 743
AsuHPI	GGTGA	2 cut(s)	518, 562
AvaII	GGWCC	2 cut(s)	245, 743
BaeGI	GKGCMC	1 cut(s)	793
BalI	TGGCCA	1 cut(s)	1030
BamHI	GGATCC	1 cut(s)	367
BanI	GGYRCC	1 cut(s)	701
BarI	GAAGNNNNNNTAC	4 cut(s)	147, 179, 427, 459
Bbv12I	GWGCWC	1 cut(s)	793
BbvI	GCAGC	2 cut(s)	767, 928
BccI	CCATC	2 cut(s)	587, 601
BciT130I	CCWGG	4 cut(s)	112, 389, 680, 854
BciVI	GTATCC	1 cut(s)	114
BcoDI	GTCTC	1 cut(s)	566
BfmI	CTRYAG	1 cut(s)	921
BfoI	RGCGCY	1 cut(s)	705
BfuI	GTATCC	1 cut(s)	114
BisI	GCNGC	2 cut(s)	756, 917
BlsI	GCNGC	2 cut(s)	757, 918
Bme1390I	CCNGG	4 cut(s)	112, 389, 680, 854
Bme18I	GGWCC	2 cut(s)	245, 743
BmgT120I	GGNCC	2 cut(s)	245, 743
BmiI	GGNNCC	4 cut(s)	369, 703, 744, 745
BmrFI	CCNGG	4 cut(s)	112, 389, 680, 854
BmsI	GCATC	2 cut(s)	449, 762
BpmI	CTGGAG	1 cut(s)	327
BsaHI	GRCGYC	1 cut(s)	702
BsaJI	CCNNGG	1 cut(s)	387
Bsc4I	CCNNNNNNNGG	2 cut(s)	242, 377
Bse3DI	GCAATG	3 cut(s)	80, 292, 750
BseBI	CCWGG	4 cut(s)	112, 389, 680, 854
BseDI	CCNNGG	1 cut(s)	387
BseGI	GGATG	4 cut(s)	141, 612, 666, 901
BseLI	CCNNNNNNNGG	2 cut(s)	242, 377
BseMI	GCAATG	3 cut(s)	80, 292, 750
BseMII	CTCAG	2 cut(s)	555, 640
BseRI	GAGGAG	2 cut(s)	531, 599
BseSI	GKGCMC	1 cut(s)	793
BseXI	GCAGC	2 cut(s)	767, 928
BsgI	GTGCAG	1 cut(s)	637
BshFI	GGCC	2 cut(s)	115, 1030
BshNI	GGYRCC	1 cut(s)	701
BsiHKAI	GWGCWC	1 cut(s)	793
BslFI	GGGAC	1 cut(s)	756
BslI	CCNNNNNNNGG	2 cut(s)	242, 377
BsmAI	GTCTC	1 cut(s)	566
BsmFI	GGGAC	1 cut(s)	756
BsmI	GAATGC	2 cut(s)	489, 496
BsnI	GGCC	2 cut(s)	115, 1030
Bsp1286I	GDGCHC	1 cut(s)	793
Bsp143I	GATC	3 cut(s)	323, 367, 380
BspACI	CCGC	2 cut(s)	148, 377
BspANI	GGCC	2 cut(s)	115, 1030
BspCNI	CTCAG	2 cut(s)	556, 639
BspLI	GGNNCC	4 cut(s)	369, 703, 744, 745
BspPI	GGATC	4 cut(s)	331, 362, 375, 388
BspT107I	GGYRCC	1 cut(s)	701
BsrDI	GCAATG	3 cut(s)	80, 292, 750
BssECI	CCNNGG	1 cut(s)	387
BssMI	GATC	3 cut(s)	323, 367, 380
BssNI	GRCGYC	1 cut(s)	702
Bst2UI	CCWGG	4 cut(s)	112, 389, 680, 854
Bst4CI	ACNGT	1 cut(s)	820
BstACI	GRCGYC	1 cut(s)	702
BstDEI	CTNAG	4 cut(s)	336, 564, 602, 626
BstF5I	GGATG	4 cut(s)	141, 612, 666, 901
BstH2I	RGCGCY	1 cut(s)	705
BstHHI	GCGC	1 cut(s)	704
BstKTI	GATC	3 cut(s)	326, 370, 383
BstMAI	GTCTC	1 cut(s)	566
BstMBI	GATC	3 cut(s)	323, 367, 380
BstMWI	GCNNNNNNNGC	2 cut(s)	422, 493
BstNI	CCWGG	4 cut(s)	112, 389, 680, 854
BstSCI	CCNGG	4 cut(s)	110, 387, 678, 852
BstSFI	CTRYAG	1 cut(s)	921
BstSLI	GKGCMC	1 cut(s)	793
BstV1I	GCAGC	2 cut(s)	767, 928
BstX2I	RGATCY	2 cut(s)	367, 380
BstYI	RGATCY	2 cut(s)	367, 380
BsuI	GTATCC	1 cut(s)	114
BsuRI	GGCC	2 cut(s)	115, 1030
BtsCI	GGATG	4 cut(s)	141, 612, 666, 901
BtsI	GCAGTG	1 cut(s)	690
BtsIMutI	CAGTG	3 cut(s)	226, 690, 785
CaiI	CAGNNNCTG	1 cut(s)	563
CfoI	GCGC	1 cut(s)	704
Cfr13I	GGNCC	2 cut(s)	245, 743
CsiI	ACCWGGT	1 cut(s)	852
Csp6I	GTAC	2 cut(s)	676, 1003
CviAII	CATG	4 cut(s)	123, 238, 569, 878
CviQI	GTAC	2 cut(s)	676, 1003
DdeI	CTNAG	4 cut(s)	336, 564, 602, 626
DinI	GGCGCC	1 cut(s)	703
DpnI	GATC	3 cut(s)	325, 369, 382
DpnII	GATC	3 cut(s)	323, 367, 380
DrdI	GACNNNNNNGTC	1 cut(s)	106
DseDI	GACNNNNNNGTC	1 cut(s)	106
EaeI	YGGCCR	1 cut(s)	1028
Eco147I	AGGCCT	1 cut(s)	115
Eco32I	GATATC	2 cut(s)	400, 555
Eco47I	GGWCC	2 cut(s)	245, 743
Eco57I	CTGAAG	2 cut(s)	441, 761
EcoO109I	RGGNCCY	1 cut(s)	743
EcoRI	GAATTC	1 cut(s)	340
EcoRII	CCWGG	4 cut(s)	110, 387, 678, 852
EcoRV	GATATC	2 cut(s)	400, 555
EgeI	GGCGCC	1 cut(s)	703
EheI	GGCGCC	1 cut(s)	703
FaeI	CATG	4 cut(s)	126, 241, 572, 881
FalI	AAGNNNNNCTT	2 cut(s)	638, 670
FaqI	GGGAC	1 cut(s)	756
FatI	CATG	4 cut(s)	122, 237, 568, 877
FauI	CCCGC	1 cut(s)	370
FblI	GTMKAC	1 cut(s)	516
Fnu4HI	GCNGC	2 cut(s)	756, 917
FokI	GGATG	4 cut(s)	148, 619, 653, 908
Fsp4HI	GCNGC	2 cut(s)	756, 917
GlaI	GCGC	1 cut(s)	703
GluI	GCNGC	2 cut(s)	756, 917
GsuI	CTGGAG	1 cut(s)	327
HaeII	RGCGCY	1 cut(s)	705
HaeIII	GGCC	2 cut(s)	115, 1030
HhaI	GCGC	1 cut(s)	704
Hin1I	GRCGYC	1 cut(s)	702
Hin1II	CATG	4 cut(s)	126, 241, 572, 881
Hin6I	GCGC	1 cut(s)	702
HinP1I	GCGC	1 cut(s)	702
HincII	GTYRAC	1 cut(s)	723
HindII	GTYRAC	1 cut(s)	723
HindIII	AAGCTT	2 cut(s)	329, 884
HinfI	GANTC	3 cut(s)	574, 1019, 1053
HpaI	GTTAAC	1 cut(s)	723
HphI	GGTGA	2 cut(s)	518, 562
Hpy166II	GTNNAC	4 cut(s)	245, 517, 723, 791
Hpy188I	TCNGA	4 cut(s)	421, 491, 559, 1052
Hpy188III	TCNNGA	4 cut(s)	306, 769, 832, 960
Hpy8I	GTNNAC	4 cut(s)	245, 517, 723, 791
HpyAV	CCTTC	2 cut(s)	286, 757
HpyCH4III	ACNGT	1 cut(s)	820
HpyCH4IV	ACGT	1 cut(s)	101
HpyCH4V	TGCA	6 cut(s)	85, 440, 618, 755, 791, 1041
HpyF10VI	GCNNNNNNNGC	2 cut(s)	422, 493
HpyF3I	CTNAG	4 cut(s)	336, 564, 602, 626
HpySE526I	ACGT	1 cut(s)	101
Hsp92I	GRCGYC	1 cut(s)	702
Hsp92II	CATG	4 cut(s)	126, 241, 572, 881
HspAI	GCGC	1 cut(s)	702
KasI	GGCGCC	1 cut(s)	701
KflI	GGGWCCC	1 cut(s)	743
KspAI	GTTAAC	1 cut(s)	723
Kzo9I	GATC	3 cut(s)	323, 367, 380
LmnI	GCTCC	2 cut(s)	126, 492
Lsp1109I	GCAGC	2 cut(s)	767, 928
LweI	GCATC	2 cut(s)	449, 762
MabI	ACCWGGT	1 cut(s)	852
MaeII	ACGT	1 cut(s)	101
MaeIII	GTNAC	2 cut(s)	97, 154
MalI	GATC	3 cut(s)	325, 369, 382
MboI	GATC	3 cut(s)	323, 367, 380
MboII	GAAGA	4 cut(s)	435, 545, 655, 975
MflI	RGATCY	2 cut(s)	367, 380
MhlI	GDGCHC	1 cut(s)	793
MlsI	TGGCCA	1 cut(s)	1030
MluCI	AATT	3 cut(s)	49, 340, 937
MluNI	TGGCCA	1 cut(s)	1030
Mly113I	GGCGCC	1 cut(s)	702
MlyI	GAGTC	1 cut(s)	568
MnlI	CCTC	9 cut(s)	302, 358, 427, 549, 552, 577, 682, 886, 1056
Mox20I	TGGCCA	1 cut(s)	1030
MroXI	GAANNNNTTC	2 cut(s)	21, 496
MscI	TGGCCA	1 cut(s)	1030
MseI	TTAA	9 cut(s)	42, 255, 468, 722, 822, 888, 933, 989, 1058
MslI	CAYNNNNRTG	1 cut(s)	770
Msp20I	TGGCCA	1 cut(s)	1030
MspR9I	CCNGG	4 cut(s)	112, 389, 680, 854
Mva1269I	GAATGC	2 cut(s)	489, 496
MvaI	CCWGG	4 cut(s)	112, 389, 680, 854
MwoI	GCNNNNNNNGC	2 cut(s)	422, 493
NarI	GGCGCC	1 cut(s)	702
NdeII	GATC	3 cut(s)	323, 367, 380
NlaIII	CATG	4 cut(s)	126, 241, 572, 881
NlaIV	GGNNCC	4 cut(s)	369, 703, 744, 745
NmuCI	GTSAC	1 cut(s)	97
PceI	AGGCCT	1 cut(s)	115
PcsI	WCGNNNNNNNCGW	1 cut(s)	98
PctI	GAATGC	2 cut(s)	489, 496
PdmI	GAANNNNTTC	2 cut(s)	21, 496
PfeI	GAWTC	2 cut(s)	1019, 1053
PkrI	GCNGC	2 cut(s)	757, 918
PleI	GAGTC	1 cut(s)	568
PluTI	GGCGCC	1 cut(s)	705
PpsI	GAGTC	1 cut(s)	568
PpuMI	RGGWCCY	1 cut(s)	743
PsiI	TTATAA	1 cut(s)	200
Psp5II	RGGWCCY	1 cut(s)	743
Psp6I	CCWGG	4 cut(s)	110, 387, 678, 852
PspGI	CCWGG	4 cut(s)	110, 387, 678, 852
PspN4I	GGNNCC	4 cut(s)	369, 703, 744, 745
PspPI	GGNCC	2 cut(s)	245, 743
PspPPI	RGGWCCY	1 cut(s)	743
PstNI	CAGNNNCTG	1 cut(s)	563
PsuI	RGATCY	2 cut(s)	367, 380
RsaI	GTAC	2 cut(s)	677, 1004
RsaNI	GTAC	2 cut(s)	676, 1003
RseI	CAYNNNNRTG	1 cut(s)	770
SaqAI	TTAA	9 cut(s)	42, 255, 468, 722, 822, 888, 933, 989, 1058
SatI	GCNGC	2 cut(s)	756, 917
Sau3AI	GATC	3 cut(s)	323, 367, 380
Sau96I	GGNCC	2 cut(s)	245, 743
SchI	GAGTC	1 cut(s)	568
ScrFI	CCNGG	4 cut(s)	112, 389, 680, 854
SduI	GDGCHC	1 cut(s)	793
SexAI	ACCWGGT	1 cut(s)	852
SfaNI	GCATC	2 cut(s)	449, 762
SfcI	CTRYAG	1 cut(s)	921
SfoI	GGCGCC	1 cut(s)	703
SinI	GGWCC	2 cut(s)	245, 743
SmiMI	CAYNNNNRTG	1 cut(s)	770
Sse9I	AATT	3 cut(s)	49, 340, 937
SseBI	AGGCCT	1 cut(s)	115
SsiI	CCGC	2 cut(s)	148, 377
SspDI	GGCGCC	1 cut(s)	701
SspI	AATATT	2 cut(s)	211, 993
StuI	AGGCCT	1 cut(s)	115
StyD4I	CCNGG	4 cut(s)	110, 387, 678, 852
TaaI	ACNGT	1 cut(s)	820
TaiI	ACGT	1 cut(s)	104
TaqII	GACCGA	1 cut(s)	334
TasI	AATT	3 cut(s)	49, 340, 937
TfiI	GAWTC	2 cut(s)	1019, 1053
Tru1I	TTAA	9 cut(s)	42, 255, 468, 722, 822, 888, 933, 989, 1058
Tru9I	TTAA	9 cut(s)	42, 255, 468, 722, 822, 888, 933, 989, 1058
TscAI	CASTG	3 cut(s)	226, 690, 785
TseFI	GTSAC	1 cut(s)	97
TseI	GCWGC	2 cut(s)	755, 916
Tsp45I	GTSAC	1 cut(s)	97
TspDTI	ATGAA	5 cut(s)	152, 489, 655, 739, 866
TspGWI	ACGGA	1 cut(s)	96
TspRI	CASTG	3 cut(s)	226, 690, 785
VneI	GTGCAC	1 cut(s)	789
VpaK11BI	GGWCC	2 cut(s)	245, 743
XapI	RAATTY	3 cut(s)	49, 340, 937
XcmI	CCANNNNNNNNNTGG	1 cut(s)	850
XmiI	GTMKAC	1 cut(s)	516
XmnI	GAANNNNTTC	2 cut(s)	21, 496

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.