Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0016010

Physical Location & Seq

Genomic Coordinates Forward (+)

2234328 .. 2235611

Gene Structure 1284 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00079180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGGATCAGTACAAGACCTCTTCAAGCAACCAATCCCACACAAAAAACCCTTTACATATCGAAGAAAAAGAACTTGGAGAGCTTAGAGAGCTTCCTTCCATGGAGGAACTTCTGCTCCAAAATCTAGTCACCGGAGACGCTGAAGCACAGATTCGGGCTGCTACTCAACTCGGTAGCCTAAGCAGCAAGCAAAGGCACAGTTTGGCTGAGAGAGGTATTATGCTCCCATTGATATCAATGCTTCATTCCCAAGACTTTGAAGCCATTGAAGCTGCTCTCTTAGCTCTGCTTAGTCTTGCCTTTGGTAGTGAAAGGAACAAGAGATGGATTTTGAAATCCGGGGCTTTACCGGTGGTGCTAAGCCTCCTTCAATGTGGAAGCAAAGCGTTGATGGAGCTCACAATAACAGCTTTGATGATCCTCTCATCTTGCAAGGCAAACAAGTTATCAATTGCCTCGTCTGGAGCCATTGAGCAAATCATTGAAATTCTCAATCGAGACTATGCTAATGCTAATGGCATGAACACAAACAAGGACACGATCACTATCAGCATGCAAGCCAGACTTGATGCCGTGGCTACACTCCACAACCTCTCAACTTGCCATCATATTATGCCATCTTTGGTCTCTTCTGGACTGCGAAAACCATCCCAACTGGTTGAGAAGGCTATTGCATTACTTGATGACATTGTTTCTTCATCCAAGATTCCGCTCAAGGAAACAGCCGGAACTTGTGGGGCAATTGGGGCATTAGTTGAGACCCTTGAAGAGGGATCAATGGAAAGCAAAGAGCACGCGGTGAGAATCCTGCTGTTCATATGCCAGAGCTGCAGAGAAAACTACAGAGGATTGATTTTGAGGGAAGGAGTAATGCCCGGGTTGCTGCAGTTGAAAGTAGATGGAACATGGAGGGCAAAAACTATGGCAGAGGAATTGCTGTTGCTTTTGAGGGACTGCTCGAGTTATGGTCCGAGTAATCAACAGTCTAGGAATGAGGTTATAGAGCAGATTATGCAAGAAATTGATGCAGAAGGAGAGGAAGTTGCTGGGAGTACAGCACTGAGGCTGCTTGCGAAGCTCAGCATCATGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm KAP

Protein Analysis

364

Amino Acids

39.73

Weight (kDa)

5.6

Isoelectric Point (pI)

52.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ARM_ARMC5	PF24768	50 - 172	1.2e-07	ARMC5
ARM_ARMC5	PF24768	137 - 280	6.8e-07	ARMC5

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016010)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14510
malus_domestica	MD09G1024900.v1.1 MD17G1026200.v1.1
prunus_persica	Prupe.3G292500_v2.0.a1
pyrus_communis	pycom17g02130
rosa_chinensis	RchiOBHm_Chr2g0173151
rosa_laevigata	RLG00000022164
rosa_multiflora	Rmu_sc0020537.1_g000001
rosa_roxburghii	Rroxscaffold_2G00079180
rosa_rugosa	Rorug02G0565700
rosa_samantha	Rh2AG645900 Rh2BG656600 Rh2CG621700 Rh2DG670000
rosa_wichuraiana	Rw2G053040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	712
AccII	CGCG	1 cut(s)	797
AciI	CCGC	2 cut(s)	710, 797
AclWI	GGATC	3 cut(s)	12, 412, 781
AcsI	RAATTY	1 cut(s)	486
AcuI	CTGAAG	1 cut(s)	162
AdeI	CACNNNGTG	1 cut(s)	799
AfaI	GTAC	2 cut(s)	11, 1054
AfiI	CCNNNNNNNGG	1 cut(s)	769
AgeI	ACCGGT	1 cut(s)	349
AgsI	TTSAA	8 cut(s)	24, 260, 269, 334, 371, 485, 767, 892
AjuI	GAANNNNNNNTTGG	2 cut(s)	57, 89
AloI	GAACNNNNNNTCC	2 cut(s)	99, 131
AluBI	AGCT	8 cut(s)	82, 91, 272, 284, 397, 410, 828, 1078
AluI	AGCT	8 cut(s)	82, 91, 272, 284, 397, 410, 828, 1078
Alw21I	GWGCWC	2 cut(s)	399, 795
Alw26I	GTCTC	4 cut(s)	129, 492, 631, 752
AlwI	GGATC	3 cut(s)	12, 412, 781
Ama87I	CYCGRG	2 cut(s)	875, 958
ApeKI	GCWGC	6 cut(s)	158, 183, 272, 828, 883, 1066
ApoI	RAATTY	1 cut(s)	486
AsiGI	ACCGGT	1 cut(s)	349
AspS9I	GGNCC	1 cut(s)	968
AsuC2I	CCSGG	3 cut(s)	340, 876, 877
AsuHPI	GGTGA	2 cut(s)	121, 811
AvaI	CYCGRG	2 cut(s)	875, 958
AvaII	GGWCC	1 cut(s)	968
BanII	GRGCYC	1 cut(s)	399
Bbv12I	GWGCWC	2 cut(s)	399, 795
BbvI	GCAGC	6 cut(s)	145, 195, 259, 815, 870, 1053
BccI	CCATC	6 cut(s)	318, 385, 612, 625, 655, 893
BceAI	ACGGC	1 cut(s)	557
BcnI	CCSGG	3 cut(s)	340, 876, 877
BcoDI	GTCTC	4 cut(s)	129, 492, 631, 752
BfaI	CTAG	2 cut(s)	125, 987
BfmI	CTRYAG	3 cut(s)	829, 841, 884
BisI	GCNGC	6 cut(s)	159, 184, 273, 829, 884, 1067
BlpI	GCTNAGC	2 cut(s)	359, 1079
BlsI	GCNGC	6 cut(s)	160, 185, 274, 830, 885, 1068
Bme1390I	CCNGG	3 cut(s)	340, 876, 877
Bme18I	GGWCC	1 cut(s)	968
BmeT110I	CYCGRG	2 cut(s)	875, 958
BmgT120I	GGNCC	1 cut(s)	968
BmiI	GGNNCC	1 cut(s)	466
BmrFI	CCNGG	3 cut(s)	340, 876, 877
BmsI	GCATC	2 cut(s)	559, 1015
BpmI	CTGGAG	1 cut(s)	483
Bpu10I	CCTNAGC	1 cut(s)	179
Bpu1102I	GCTNAGC	2 cut(s)	359, 1079
BpuEI	CTTGAG	1 cut(s)	698
BpuMI	CCSGG	3 cut(s)	340, 876, 877
BsaBI	GATNNNNATC	1 cut(s)	545
BsaI	GGTCTC	2 cut(s)	631, 752
BsaJI	CCNNGG	4 cut(s)	99, 339, 573, 875
BsaWI	WCCGGW	2 cut(s)	131, 349
BsaXI	ACNNNNNCTCC	4 cut(s)	99, 129, 1026, 1056
Bsc4I	CCNNNNNNNGG	1 cut(s)	769
Bse118I	RCCGGY	1 cut(s)	349
Bse1I	ACTGG	1 cut(s)	660
Bse8I	GATNNNNATC	1 cut(s)	545
BseDI	CCNNGG	4 cut(s)	99, 339, 573, 875
BseGI	GGATG	2 cut(s)	647, 698
BseJI	GATNNNNATC	1 cut(s)	545
BseLI	CCNNNNNNNGG	1 cut(s)	769
BseMII	CTCAG	3 cut(s)	198, 1052, 1093
BseNI	ACTGG	1 cut(s)	660
BseXI	GCAGC	6 cut(s)	145, 195, 259, 815, 870, 1053
BseYI	CCCAGC	1 cut(s)	1046
Bsh1236I	CGCG	1 cut(s)	797
BshTI	ACCGGT	1 cut(s)	349
BsiHKAI	GWGCWC	2 cut(s)	399, 795
BsiHKCI	CYCGRG	2 cut(s)	875, 958
BsiSI	CCGG	5 cut(s)	132, 339, 350, 726, 876
BslFI	GGGAC	1 cut(s)	965
BslI	CCNNNNNNNGG	1 cut(s)	769
BsmAI	GTCTC	4 cut(s)	129, 492, 631, 752
BsmBI	CGTCTC	1 cut(s)	129
BsmFI	GGGAC	1 cut(s)	965
Bso31I	GGTCTC	2 cut(s)	631, 752
BsoBI	CYCGRG	2 cut(s)	875, 958
Bsp1286I	GDGCHC	2 cut(s)	399, 795
Bsp143I	GATC	4 cut(s)	4, 417, 540, 773
Bsp1720I	GCTNAGC	2 cut(s)	359, 1079
Bsp19I	CCATGG	1 cut(s)	99
BspACI	CCGC	2 cut(s)	710, 797
BspCNI	CTCAG	3 cut(s)	199, 1053, 1092
BspFNI	CGCG	1 cut(s)	797
BspLI	GGNNCC	1 cut(s)	466
BspMAI	CTGCAG	2 cut(s)	833, 888
BspPI	GGATC	3 cut(s)	12, 412, 781
BspTNI	GGTCTC	2 cut(s)	631, 752
BsrBI	CCGCTC	1 cut(s)	712
BsrFI	RCCGGY	1 cut(s)	349
BsrI	ACTGG	1 cut(s)	660
BssAI	RCCGGY	1 cut(s)	349
BssECI	CCNNGG	4 cut(s)	99, 339, 573, 875
BssMI	GATC	4 cut(s)	4, 417, 540, 773
BssT1I	CCWWGG	1 cut(s)	99
Bst4CI	ACNGT	2 cut(s)	200, 984
Bst6I	CTCTTC	3 cut(s)	25, 634, 762
BstAPI	GCANNNNNTGC	1 cut(s)	1012
BstC8I	GCNNGC	5 cut(s)	188, 554, 558, 795, 1071
BstDEI	CTNAG	8 cut(s)	83, 179, 207, 280, 290, 359, 1061, 1079
BstDSI	CCRYGG	2 cut(s)	99, 573
BstENI	CCTNNNNNAGG	1 cut(s)	767
BstF5I	GGATG	2 cut(s)	647, 698
BstFNI	CGCG	1 cut(s)	797
BstKTI	GATC	4 cut(s)	7, 420, 543, 776
BstMAI	GTCTC	4 cut(s)	129, 492, 631, 752
BstMBI	GATC	4 cut(s)	4, 417, 540, 773
BstMWI	GCNNNNNNNGC	9 cut(s)	88, 183, 269, 281, 746, 828, 880, 1012, 1075
BstNSI	RCATGY	1 cut(s)	556
BstSCI	CCNGG	3 cut(s)	338, 874, 875
BstSFI	CTRYAG	3 cut(s)	829, 841, 884
BstUI	CGCG	1 cut(s)	797
BstV1I	GCAGC	6 cut(s)	145, 195, 259, 815, 870, 1053
BtgI	CCRYGG	2 cut(s)	99, 573
BtsCI	GGATG	2 cut(s)	647, 698
BtsIMutI	CAGTG	1 cut(s)	1058
Cac8I	GCNNGC	5 cut(s)	188, 554, 558, 795, 1071
Cfr10I	RCCGGY	1 cut(s)	349
Cfr13I	GGNCC	1 cut(s)	968
Cfr9I	CCCGGG	1 cut(s)	875
CseI	GACGC	1 cut(s)	146
Csp6I	GTAC	2 cut(s)	10, 1053
CspAI	ACCGGT	1 cut(s)	349
CviAII	CATG	5 cut(s)	100, 520, 553, 906, 1087
CviQI	GTAC	2 cut(s)	10, 1053
DdeI	CTNAG	8 cut(s)	83, 179, 207, 280, 290, 359, 1061, 1079
DpnI	GATC	4 cut(s)	6, 419, 542, 775
DpnII	GATC	4 cut(s)	4, 417, 540, 773
DraIII	CACNNNGTG	1 cut(s)	799
Eam1104I	CTCTTC	3 cut(s)	25, 634, 762
EarI	CTCTTC	3 cut(s)	25, 634, 762
Ecl136II	GAGCTC	1 cut(s)	397
Eco130I	CCWWGG	1 cut(s)	99
Eco24I	GRGCYC	1 cut(s)	399
Eco31I	GGTCTC	2 cut(s)	631, 752
Eco32I	GATATC	1 cut(s)	234
Eco47I	GGWCC	1 cut(s)	968
Eco53kI	GAGCTC	1 cut(s)	397
Eco57I	CTGAAG	1 cut(s)	162
Eco88I	CYCGRG	2 cut(s)	875, 958
EcoICRI	GAGCTC	1 cut(s)	397
EcoNI	CCTNNNNNAGG	1 cut(s)	767
EcoRV	GATATC	1 cut(s)	234
EcoT14I	CCWWGG	1 cut(s)	99
EcoT38I	GRGCYC	1 cut(s)	399
ErhI	CCWWGG	1 cut(s)	99
Esp3I	CGTCTC	1 cut(s)	129
FaeI	CATG	5 cut(s)	103, 523, 556, 909, 1090
FalI	AAGNNNNNCTT	2 cut(s)	549, 581
FaqI	GGGAC	1 cut(s)	965
FatI	CATG	5 cut(s)	99, 519, 552, 905, 1086
FauNDI	CATATG	1 cut(s)	818
Fnu4HI	GCNGC	6 cut(s)	159, 184, 273, 829, 884, 1067
FokI	GGATG	2 cut(s)	634, 685
FriOI	GRGCYC	1 cut(s)	399
Fsp4HI	GCNGC	6 cut(s)	159, 184, 273, 829, 884, 1067
FspBI	CTAG	2 cut(s)	125, 987
GluI	GCNGC	6 cut(s)	159, 184, 273, 829, 884, 1067
GsaI	CCCAGC	1 cut(s)	1050
GsuI	CTGGAG	1 cut(s)	483
HapII	CCGG	5 cut(s)	132, 339, 350, 726, 876
HgaI	GACGC	1 cut(s)	146
Hin1II	CATG	5 cut(s)	103, 523, 556, 909, 1090
HinfI	GANTC	3 cut(s)	151, 706, 804
HpaII	CCGG	5 cut(s)	132, 339, 350, 726, 876
HphI	GGTGA	2 cut(s)	121, 811
Hpy188I	TCNGA	1 cut(s)	972
Hpy188III	TCNNGA	3 cut(s)	462, 497, 633
HpyAV	CCTTC	5 cut(s)	105, 377, 658, 857, 1025
HpyCH4III	ACNGT	2 cut(s)	200, 984
HpyCH4V	TGCA	8 cut(s)	432, 556, 674, 831, 886, 1015, 1028, 1090
HpyF10VI	GCNNNNNNNGC	9 cut(s)	88, 183, 269, 281, 746, 828, 880, 1012, 1075
HpyF3I	CTNAG	8 cut(s)	83, 179, 207, 280, 290, 359, 1061, 1079
Hsp92II	CATG	5 cut(s)	103, 523, 556, 909, 1090
Kzo9I	GATC	4 cut(s)	4, 417, 540, 773
LmnI	GCTCC	4 cut(s)	120, 228, 394, 464
Lsp1109I	GCAGC	6 cut(s)	145, 195, 259, 815, 870, 1053
LweI	GCATC	2 cut(s)	559, 1015
MaeI	CTAG	2 cut(s)	125, 987
MaeIII	GTNAC	1 cut(s)	127
MalI	GATC	4 cut(s)	6, 419, 542, 775
MbiI	CCGCTC	1 cut(s)	712
MboI	GATC	4 cut(s)	4, 417, 540, 773
MboII	GAAGA	5 cut(s)	12, 74, 621, 687, 779
MfeI	CAATTG	2 cut(s)	450, 741
MhlI	GDGCHC	2 cut(s)	399, 795
MluCI	AATT	5 cut(s)	450, 486, 741, 932, 1020
MspI	CCGG	5 cut(s)	132, 339, 350, 726, 876
MspR9I	CCNGG	3 cut(s)	340, 876, 877
MunI	CAATTG	2 cut(s)	450, 741
MvnI	CGCG	1 cut(s)	797
MwoI	GCNNNNNNNGC	9 cut(s)	88, 183, 269, 281, 746, 828, 880, 1012, 1075
NciI	CCSGG	3 cut(s)	340, 876, 877
NcoI	CCATGG	1 cut(s)	99
NdeI	CATATG	1 cut(s)	818
NdeII	GATC	4 cut(s)	4, 417, 540, 773
NlaIII	CATG	5 cut(s)	103, 523, 556, 909, 1090
NlaIV	GGNNCC	1 cut(s)	466
NmuCI	GTSAC	1 cut(s)	127
NspI	RCATGY	1 cut(s)	556
PaeI	GCATGC	1 cut(s)	556
PaeR7I	CTCGAG	1 cut(s)	958
PfeI	GAWTC	3 cut(s)	151, 706, 804
PinAI	ACCGGT	1 cut(s)	349
PkrI	GCNGC	6 cut(s)	160, 185, 274, 830, 885, 1068
Psp124BI	GAGCTC	1 cut(s)	399
PspFI	CCCAGC	1 cut(s)	1046
PspN4I	GGNNCC	1 cut(s)	466
PspPI	GGNCC	1 cut(s)	968
PspXI	VCTCGAGB	1 cut(s)	958
PstI	CTGCAG	2 cut(s)	833, 888
RsaI	GTAC	2 cut(s)	11, 1054
RsaNI	GTAC	2 cut(s)	10, 1053
SacI	GAGCTC	1 cut(s)	399
SatI	GCNGC	6 cut(s)	159, 184, 273, 829, 884, 1067
Sau3AI	GATC	4 cut(s)	4, 417, 540, 773
Sau96I	GGNCC	1 cut(s)	968
ScrFI	CCNGG	3 cut(s)	340, 876, 877
SduI	GDGCHC	2 cut(s)	399, 795
SfaNI	GCATC	2 cut(s)	559, 1015
SfcI	CTRYAG	3 cut(s)	829, 841, 884
Sfr274I	CTCGAG	1 cut(s)	958
SinI	GGWCC	1 cut(s)	968
SlaI	CTCGAG	1 cut(s)	958
SmaI	CCCGGG	1 cut(s)	877
SmlI	CTYRAG	2 cut(s)	713, 958
SmoI	CTYRAG	2 cut(s)	713, 958
SphI	GCATGC	1 cut(s)	556
Sse9I	AATT	5 cut(s)	450, 486, 741, 932, 1020
SsiI	CCGC	2 cut(s)	710, 797
SspMI	CTAG	2 cut(s)	125, 987
SstI	GAGCTC	1 cut(s)	399
StyD4I	CCNGG	3 cut(s)	338, 874, 875
StyI	CCWWGG	1 cut(s)	99
TaaI	ACNGT	2 cut(s)	200, 984
TaqI	TCGA	3 cut(s)	60, 496, 959
TasI	AATT	5 cut(s)	450, 486, 741, 932, 1020
TatI	WGTACW	2 cut(s)	9, 1052
TfiI	GAWTC	3 cut(s)	151, 706, 804
TscAI	CASTG	1 cut(s)	1065
TseFI	GTSAC	1 cut(s)	127
TseI	GCWGC	6 cut(s)	158, 183, 272, 828, 883, 1066
Tsp45I	GTSAC	1 cut(s)	127
TspDTI	ATGAA	4 cut(s)	233, 536, 687, 805
TspMI	CCCGGG	1 cut(s)	875
TspRI	CASTG	1 cut(s)	1065
VpaK11BI	GGWCC	1 cut(s)	968
XagI	CCTNNNNNAGG	1 cut(s)	767
XapI	RAATTY	1 cut(s)	486
XceI	RCATGY	1 cut(s)	556
XhoI	CTCGAG	1 cut(s)	958
XmaI	CCCGGG	1 cut(s)	875
XspI	CTAG	2 cut(s)	125, 987

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.