MD09G1024900.v1.1

U-box domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0016010
Physical Location & Seq
Forward (+)
1503717 .. 1504145
429 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1024900.v1.1.491

Sequence Viewer

Length: 429 bp
ATGGTTGAATTTCTCAGTCAAGACTATGCTGAAGGCATCAGTGTGCAGGCCAGACTCGATAGCATAGCCACACTAAACCTCTCGCGCTGCCATCAGATTATTTTGTCTCAGGTCTCTTCGGGCGTAGTGTTCTCAGTAATAATCCAAGGCTTGGAAAAATCAAGCCAACCGGTTGAGAAGGCAATTGTGCTACTTGACGACATTGTTTCTTCATCGAAGACTGCGCTCAAGGAAACTGCAGGTACGTGCAGCACAATCTGGGTGCTGGTTGAGACAATCGAAGGGGGATCGATGAAATGCAAGGAGCACGCAGCGAGTATACTCCTGCTTATATGCAAGAGGTGCAGAGAGAACTACAGAGGACTGATACTGAGAGGAGGAGCAATGCCCGGACTGCTTCAGCTGAGTGGATGGGACGCGCACGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Arm KAP

Protein Analysis

143

Amino Acids

15.3

Weight (kDa)

6.28

Isoelectric Point (pI)

40.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016010)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14510
malus_domestica MD09G1024900.v1.1 MD17G1026200.v1.1
prunus_persica Prupe.3G292500_v2.0.a1
pyrus_communis pycom17g02130
rosa_chinensis RchiOBHm_Chr2g0173151
rosa_laevigata RLG00000022164
rosa_multiflora Rmu_sc0020537.1_g000001
rosa_roxburghii Rroxscaffold_2G00079180
rosa_rugosa Rorug02G0565700
rosa_samantha Rh2AG645900 Rh2BG656600 Rh2CG621700 Rh2DG670000
rosa_wichuraiana Rw2G053040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 230
AccB7I CCANNNNNTGG 1 cut(s) 151
AccI GTMKAC 1 cut(s) 319
AccII CGCG 2 cut(s) 85, 419
AclWI GGATC 1 cut(s) 295
AcsI RAATTY 1 cut(s) 8
AcuI CTGAAG 2 cut(s) 51, 383
AfaI GTAC 1 cut(s) 244
AfiI CCNNNNNNNGG 1 cut(s) 151
AgeI ACCGGT 1 cut(s) 169
AgsI TTSAA 1 cut(s) 8
AluBI AGCT 1 cut(s) 403
AluI AGCT 1 cut(s) 403
Alw21I GWGCWC 1 cut(s) 309
Alw26I GTCTC 3 cut(s) 111, 118, 266
AlwI GGATC 1 cut(s) 295
AoxI GGCC 1 cut(s) 48
ApeKI GCWGC 3 cut(s) 87, 249, 311
ApoI RAATTY 1 cut(s) 8
AsiGI ACCGGT 1 cut(s) 169
AspLEI GCGC 3 cut(s) 87, 226, 421
AsuC2I CCSGG 1 cut(s) 390
BbsI GAAGAC 1 cut(s) 224
Bbv12I GWGCWC 1 cut(s) 309
BbvI GCAGC 3 cut(s) 74, 261, 323
BccI CCATC 2 cut(s) 99, 405
BcnI CCSGG 1 cut(s) 390
BcoDI GTCTC 3 cut(s) 111, 118, 266
BfmI CTRYAG 2 cut(s) 237, 355
BfuAI ACCTGC 1 cut(s) 230
BisI GCNGC 3 cut(s) 88, 250, 312
BlsI GCNGC 3 cut(s) 89, 251, 313
Bme1390I CCNGG 1 cut(s) 390
BmrFI CCNGG 1 cut(s) 390
BmsI GCATC 1 cut(s) 45
BpiI GAAGAC 1 cut(s) 224
BpuEI CTTGAG 1 cut(s) 212
BpuMI CCSGG 1 cut(s) 390
Bsa29I ATCGAT 1 cut(s) 290
BsaAI YACGTR 1 cut(s) 246
BsaI GGTCTC 1 cut(s) 118
BsaJI CCNNGG 1 cut(s) 145
BsaWI WCCGGW 1 cut(s) 169
Bsc4I CCNNNNNNNGG 1 cut(s) 151
Bse118I RCCGGY 1 cut(s) 169
Bse3DI GCAATG 1 cut(s) 390
BseCI ATCGAT 1 cut(s) 290
BseDI CCNNGG 1 cut(s) 145
BseGI GGATG 1 cut(s) 416
BseLI CCNNNNNNNGG 1 cut(s) 151
BseMI GCAATG 1 cut(s) 390
BseMII CTCAG 5 cut(s) 28, 122, 147, 362, 395
BseRI GAGGAG 2 cut(s) 390, 393
BseXI GCAGC 3 cut(s) 74, 261, 323
BsgI GTGCAG 3 cut(s) 65, 268, 364
Bsh1236I CGCG 2 cut(s) 85, 419
BshFI GGCC 1 cut(s) 50
BshTI ACCGGT 1 cut(s) 169
BshVI ATCGAT 1 cut(s) 290
BsiHKAI GWGCWC 1 cut(s) 309
BsiSI CCGG 2 cut(s) 170, 390
BslI CCNNNNNNNGG 1 cut(s) 151
BsmAI GTCTC 3 cut(s) 111, 118, 266
BsnI GGCC 1 cut(s) 50
Bso31I GGTCTC 1 cut(s) 118
Bsp1286I GDGCHC 1 cut(s) 309
Bsp143I GATC 1 cut(s) 287
BspANI GGCC 1 cut(s) 50
BspCNI CTCAG 5 cut(s) 27, 121, 146, 363, 396
BspDI ATCGAT 1 cut(s) 290
BspFNI CGCG 2 cut(s) 85, 419
BspMAI CTGCAG 1 cut(s) 241
BspMI ACCTGC 1 cut(s) 230
BspPI GGATC 1 cut(s) 295
BspTNI GGTCTC 1 cut(s) 118
BsrDI GCAATG 1 cut(s) 390
BsrFI RCCGGY 1 cut(s) 169
BssAI RCCGGY 1 cut(s) 169
BssECI CCNNGG 1 cut(s) 145
BssMI GATC 1 cut(s) 287
BssNAI GTATAC 1 cut(s) 320
BssT1I CCWWGG 1 cut(s) 145
Bst1107I GTATAC 1 cut(s) 320
Bst6I CTCTTC 1 cut(s) 121
BstAPI GCANNNNNTGC 1 cut(s) 342
BstBAI YACGTR 1 cut(s) 246
BstC8I GCNNGC 2 cut(s) 48, 309
BstDEI CTNAG 5 cut(s) 14, 108, 133, 371, 404
BstF5I GGATG 1 cut(s) 416
BstFNI CGCG 2 cut(s) 85, 419
BstHHI GCGC 3 cut(s) 87, 226, 421
BstKTI GATC 1 cut(s) 290
BstMAI GTCTC 3 cut(s) 111, 118, 266
BstMBI GATC 1 cut(s) 287
BstMWI GCNNNNNNNGC 2 cut(s) 342, 394
BstSCI CCNGG 1 cut(s) 388
BstSFI CTRYAG 2 cut(s) 237, 355
BstUI CGCG 2 cut(s) 85, 419
BstV1I GCAGC 3 cut(s) 74, 261, 323
BstV2I GAAGAC 1 cut(s) 224
BstZ17I GTATAC 1 cut(s) 320
Bsu15I ATCGAT 1 cut(s) 290
BsuRI GGCC 1 cut(s) 50
BsuTUI ATCGAT 1 cut(s) 290
BtsCI GGATG 1 cut(s) 416
BtsIMutI CAGTG 1 cut(s) 46
BveI ACCTGC 1 cut(s) 230
Cac8I GCNNGC 2 cut(s) 48, 309
CfoI GCGC 3 cut(s) 87, 226, 421
Cfr10I RCCGGY 1 cut(s) 169
ClaI ATCGAT 1 cut(s) 290
Csp6I GTAC 1 cut(s) 243
CspAI ACCGGT 1 cut(s) 169
CviJI RGCY 6 cut(s) 50, 68, 150, 165, 403, 426
CviKI_1 RGCY 6 cut(s) 50, 68, 150, 165, 403, 426
CviQI GTAC 1 cut(s) 243
DdeI CTNAG 5 cut(s) 14, 108, 133, 371, 404
DpnI GATC 1 cut(s) 289
DpnII GATC 1 cut(s) 287
Eam1104I CTCTTC 1 cut(s) 121
EarI CTCTTC 1 cut(s) 121
Eco130I CCWWGG 1 cut(s) 145
Eco31I GGTCTC 1 cut(s) 118
Eco57I CTGAAG 2 cut(s) 51, 383
EcoT14I CCWWGG 1 cut(s) 145
ErhI CCWWGG 1 cut(s) 145
FaiI YATR 5 cut(s) 27, 65, 320, 332, 334
FblI GTMKAC 1 cut(s) 319
Fnu4HI GCNGC 3 cut(s) 88, 250, 312
FokI GGATG 1 cut(s) 423
Fsp4HI GCNGC 3 cut(s) 88, 250, 312
GlaI GCGC 3 cut(s) 86, 225, 420
GluI GCNGC 3 cut(s) 88, 250, 312
HaeIII GGCC 1 cut(s) 50
HapII CCGG 2 cut(s) 170, 390
HhaI GCGC 3 cut(s) 87, 226, 421
Hin6I GCGC 3 cut(s) 85, 224, 419
HinP1I GCGC 3 cut(s) 85, 224, 419
HinfI GANTC 1 cut(s) 54
HpaII CCGG 2 cut(s) 170, 390
Hpy166II GTNNAC 1 cut(s) 320
Hpy188I TCNGA 1 cut(s) 96
Hpy188III TCNNGA 1 cut(s) 20
Hpy8I GTNNAC 1 cut(s) 320
HpyAV CCTTC 3 cut(s) 26, 172, 275
HpyCH4IV ACGT 1 cut(s) 245
HpyCH4V TGCA 6 cut(s) 46, 239, 249, 300, 336, 345
HpyF10VI GCNNNNNNNGC 2 cut(s) 342, 394
HpyF3I CTNAG 5 cut(s) 14, 108, 133, 371, 404
HpySE526I ACGT 1 cut(s) 245
HspAI GCGC 3 cut(s) 85, 224, 419
Kzo9I GATC 1 cut(s) 287
LmnI GCTCC 2 cut(s) 304, 380
LpnPI CCDG 9 cut(s) 32, 64, 95, 183, 225, 244, 251, 338, 403
Lsp1109I GCAGC 3 cut(s) 74, 261, 323
LweI GCATC 1 cut(s) 45
MaeII ACGT 1 cut(s) 245
MalI GATC 1 cut(s) 289
MboI GATC 1 cut(s) 287
MboII GAAGA 3 cut(s) 108, 201, 229
MfeI CAATTG 1 cut(s) 183
MhlI GDGCHC 1 cut(s) 309
MluCI AATT 2 cut(s) 8, 183
MlyI GAGTC 1 cut(s) 48
MnlI CCTC 5 cut(s) 89, 333, 353, 368, 371
MslI CAYNNNNRTG 1 cut(s) 41
MspA1I CMGCKG 1 cut(s) 403
MspI CCGG 2 cut(s) 170, 390
MspR9I CCNGG 1 cut(s) 390
MunI CAATTG 1 cut(s) 183
MvnI CGCG 2 cut(s) 85, 419
MwoI GCNNNNNNNGC 2 cut(s) 342, 394
NciI CCSGG 1 cut(s) 390
NdeII GATC 1 cut(s) 287
PflMI CCANNNNNTGG 1 cut(s) 151
PinAI ACCGGT 1 cut(s) 169
PkrI GCNGC 3 cut(s) 89, 251, 313
PleI GAGTC 1 cut(s) 48
PpsI GAGTC 1 cut(s) 48
Ppu21I YACGTR 1 cut(s) 246
PstI CTGCAG 1 cut(s) 241
PvuII CAGCTG 1 cut(s) 403
RsaI GTAC 1 cut(s) 244
RsaNI GTAC 1 cut(s) 243
RseI CAYNNNNRTG 1 cut(s) 41
SatI GCNGC 3 cut(s) 88, 250, 312
Sau3AI GATC 1 cut(s) 287
SchI GAGTC 1 cut(s) 48
ScrFI CCNGG 1 cut(s) 390
SduI GDGCHC 1 cut(s) 309
SetI ASST 6 cut(s) 81, 114, 244, 248, 344, 405
SfaNI GCATC 1 cut(s) 45
SfcI CTRYAG 2 cut(s) 237, 355
SmiMI CAYNNNNRTG 1 cut(s) 41
SmlI CTYRAG 1 cut(s) 227
SmoI CTYRAG 1 cut(s) 227
Sse9I AATT 2 cut(s) 8, 183
StyD4I CCNGG 1 cut(s) 388
StyI CCWWGG 1 cut(s) 145
TaiI ACGT 1 cut(s) 248
TaqI TCGA 4 cut(s) 57, 215, 279, 290
TasI AATT 2 cut(s) 8, 183
TscAI CASTG 1 cut(s) 46
TseI GCWGC 3 cut(s) 87, 249, 311
TspDTI ATGAA 2 cut(s) 201, 308
TspRI CASTG 1 cut(s) 46
Van91I CCANNNNNTGG 1 cut(s) 151
XapI RAATTY 1 cut(s) 8
XmiI GTMKAC 1 cut(s) 319
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.