RchiOBHm_Chr2g0173151

U-box domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0016010
Physical Location & Seq
Reverse (-)
86267438 .. 86268046
609 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ54039

Sequence Viewer

Length: 609 bp
ATGAACACAAACAAGGACACGATCACTATCAGCATGCAAGCCAGACTTGATGCCGTGGCTACACTCCACAACCTCTCAACTTGCCATCATATTATGCCATCTTTGGTCTCTTCTGGTGTAGTTTCCTCCTTGCTGCAAATAATCCGCAGCTGCGAAAAACCGTCCCAACTGGTTGAGAAGGCTATTGCATTACTTGATGACATTGTTTCTTCATCCAAGATTCCGCTCAAGGAAACAGCCGGAACTTGTGGGGCAATTGGGGCATTAGTTGAGACCCTTGAAGAGGGATCAATGGAAAGCAAAGAGCACGCGGTGAGAATCCTGCTGTTCATATGCCAGAGCTGCAGAGAAAACTACGGAGGATTGATTTTACGGGAAGGAGTAATGCCCGGGTTGCTGCAGTTGAAAGTAGATGGAACATGGAGGGCAAAAACTATGGCAGAGGAATTGCTGTTGCTTTTGAGGGACTGCTCGAGTTATGGTCCGAGTAATCAACAGTCCAGGAATGAGGTTATAGAGCAGATTATGCAAGAAATTGATGCAGAAGGAGAGGAAGTTGCTGGGAGTACAGCACTGAGGCTGCTCGCGAAGCTCAGCATCATGCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Arm KAP

Protein Analysis

202

Amino Acids

21.95

Weight (kDa)

5.15

Isoelectric Point (pI)

49.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARM_PUB PF25598 18 - 158 5.4e-08 Plant U-box protein ARM repeat region
ARM_ARMC5 PF24768 19 - 196 1.9e-06 ARMC5
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016010)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14510
malus_domestica MD09G1024900.v1.1 MD17G1026200.v1.1
prunus_persica Prupe.3G292500_v2.0.a1
pyrus_communis pycom17g02130
rosa_chinensis RchiOBHm_Chr2g0173151
rosa_laevigata RLG00000022164
rosa_multiflora Rmu_sc0020537.1_g000001
rosa_roxburghii Rroxscaffold_2G00079180
rosa_rugosa Rorug02G0565700
rosa_samantha Rh2AG645900 Rh2BG656600 Rh2CG621700 Rh2DG670000
rosa_wichuraiana Rw2G053040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 226
AccII CGCG 2 cut(s) 311, 587
AciI CCGC 3 cut(s) 145, 224, 311
AclWI GGATC 1 cut(s) 295
AdeI CACNNNGTG 1 cut(s) 313
AfaI GTAC 1 cut(s) 568
AfiI CCNNNNNNNGG 1 cut(s) 283
AgsI TTSAA 2 cut(s) 281, 406
AjnI CCWGG 1 cut(s) 500
AluBI AGCT 3 cut(s) 150, 342, 592
AluI AGCT 3 cut(s) 150, 342, 592
Alw21I GWGCWC 1 cut(s) 309
Alw26I GTCTC 2 cut(s) 112, 266
AlwI GGATC 1 cut(s) 295
Ama87I CYCGRG 2 cut(s) 389, 472
ApeKI GCWGC 6 cut(s) 133, 147, 150, 342, 397, 580
AspS9I GGNCC 1 cut(s) 482
AsuC2I CCSGG 2 cut(s) 390, 391
AsuHPI GGTGA 1 cut(s) 325
AvaI CYCGRG 2 cut(s) 389, 472
AvaII GGWCC 1 cut(s) 482
Bbv12I GWGCWC 1 cut(s) 309
BbvI GCAGC 6 cut(s) 120, 137, 159, 329, 384, 567
BccI CCATC 3 cut(s) 93, 106, 407
BceAI ACGGC 1 cut(s) 38
BciT130I CCWGG 1 cut(s) 502
BcnI CCSGG 2 cut(s) 390, 391
BcoDI GTCTC 2 cut(s) 112, 266
BfmI CTRYAG 2 cut(s) 343, 398
BisI GCNGC 6 cut(s) 134, 148, 151, 343, 398, 581
BlpI GCTNAGC 1 cut(s) 593
BlsI GCNGC 6 cut(s) 135, 149, 152, 344, 399, 582
Bme1390I CCNGG 3 cut(s) 390, 391, 502
Bme18I GGWCC 1 cut(s) 482
BmeT110I CYCGRG 2 cut(s) 389, 472
BmgT120I GGNCC 1 cut(s) 482
BmrFI CCNGG 3 cut(s) 390, 391, 502
BmsI GCATC 2 cut(s) 40, 529
Bpu1102I GCTNAGC 1 cut(s) 593
BpuEI CTTGAG 1 cut(s) 212
BpuMI CCSGG 2 cut(s) 390, 391
BsaBI GATNNNNATC 1 cut(s) 26
BsaI GGTCTC 2 cut(s) 112, 266
BsaJI CCNNGG 2 cut(s) 54, 389
BsaXI ACNNNNNCTCC 2 cut(s) 540, 570
Bsc4I CCNNNNNNNGG 1 cut(s) 283
Bse1I ACTGG 1 cut(s) 174
Bse8I GATNNNNATC 1 cut(s) 26
BseBI CCWGG 1 cut(s) 502
BseDI CCNNGG 2 cut(s) 54, 389
BseGI GGATG 1 cut(s) 212
BseJI GATNNNNATC 1 cut(s) 26
BseLI CCNNNNNNNGG 1 cut(s) 283
BseMII CTCAG 2 cut(s) 566, 607
BseNI ACTGG 1 cut(s) 174
BseXI GCAGC 6 cut(s) 120, 137, 159, 329, 384, 567
BseYI CCCAGC 1 cut(s) 560
Bsh1236I CGCG 2 cut(s) 311, 587
BsiHKAI GWGCWC 1 cut(s) 309
BsiHKCI CYCGRG 2 cut(s) 389, 472
BsiSI CCGG 2 cut(s) 240, 390
BslFI GGGAC 2 cut(s) 148, 479
BslI CCNNNNNNNGG 1 cut(s) 283
BsmAI GTCTC 2 cut(s) 112, 266
BsmFI GGGAC 2 cut(s) 148, 479
Bso31I GGTCTC 2 cut(s) 112, 266
BsoBI CYCGRG 2 cut(s) 389, 472
Bsp1286I GDGCHC 1 cut(s) 309
Bsp143I GATC 2 cut(s) 21, 287
Bsp1720I GCTNAGC 1 cut(s) 593
Bsp68I TCGCGA 1 cut(s) 587
BspACI CCGC 3 cut(s) 145, 224, 311
BspCNI CTCAG 2 cut(s) 567, 606
BspFNI CGCG 2 cut(s) 311, 587
BspMAI CTGCAG 2 cut(s) 347, 402
BspPI GGATC 1 cut(s) 295
BspTNI GGTCTC 2 cut(s) 112, 266
BsrBI CCGCTC 1 cut(s) 226
BsrI ACTGG 1 cut(s) 174
BssECI CCNNGG 2 cut(s) 54, 389
BssMI GATC 2 cut(s) 21, 287
Bst2UI CCWGG 1 cut(s) 502
Bst4CI ACNGT 2 cut(s) 162, 498
Bst6I CTCTTC 2 cut(s) 115, 276
BstAPI GCANNNNNTGC 1 cut(s) 526
BstC8I GCNNGC 4 cut(s) 35, 39, 309, 585
BstDEI CTNAG 2 cut(s) 575, 593
BstDSI CCRYGG 1 cut(s) 54
BstENI CCTNNNNNAGG 1 cut(s) 281
BstF5I GGATG 1 cut(s) 212
BstFNI CGCG 2 cut(s) 311, 587
BstKTI GATC 2 cut(s) 24, 290
BstMAI GTCTC 2 cut(s) 112, 266
BstMBI GATC 2 cut(s) 21, 287
BstMWI GCNNNNNNNGC 5 cut(s) 260, 342, 394, 526, 589
BstNI CCWGG 1 cut(s) 502
BstNSI RCATGY 1 cut(s) 37
BstSCI CCNGG 3 cut(s) 388, 389, 500
BstSFI CTRYAG 2 cut(s) 343, 398
BstUI CGCG 2 cut(s) 311, 587
BstV1I GCAGC 6 cut(s) 120, 137, 159, 329, 384, 567
BtgI CCRYGG 1 cut(s) 54
BtsCI GGATG 1 cut(s) 212
BtsIMutI CAGTG 1 cut(s) 572
BtuMI TCGCGA 1 cut(s) 587
Cac8I GCNNGC 4 cut(s) 35, 39, 309, 585
Cfr13I GGNCC 1 cut(s) 482
Cfr9I CCCGGG 1 cut(s) 389
Csp6I GTAC 1 cut(s) 567
CviAII CATG 3 cut(s) 34, 420, 601
CviJI RGCY 8 cut(s) 41, 59, 150, 182, 239, 342, 580, 592
CviKI_1 RGCY 8 cut(s) 41, 59, 150, 182, 239, 342, 580, 592
CviQI GTAC 1 cut(s) 567
DdeI CTNAG 2 cut(s) 575, 593
DpnI GATC 2 cut(s) 23, 289
DpnII GATC 2 cut(s) 21, 287
DraIII CACNNNGTG 1 cut(s) 313
Eam1104I CTCTTC 2 cut(s) 115, 276
EarI CTCTTC 2 cut(s) 115, 276
Eco31I GGTCTC 2 cut(s) 112, 266
Eco47I GGWCC 1 cut(s) 482
Eco88I CYCGRG 2 cut(s) 389, 472
EcoNI CCTNNNNNAGG 1 cut(s) 281
EcoRII CCWGG 1 cut(s) 500
FaeI CATG 3 cut(s) 37, 423, 604
FalI AAGNNNNNCTT 2 cut(s) 30, 62
FaqI GGGAC 2 cut(s) 148, 479
FatI CATG 3 cut(s) 33, 419, 600
FauNDI CATATG 1 cut(s) 332
Fnu4HI GCNGC 6 cut(s) 134, 148, 151, 343, 398, 581
FokI GGATG 1 cut(s) 199
Fsp4HI GCNGC 6 cut(s) 134, 148, 151, 343, 398, 581
GluI GCNGC 6 cut(s) 134, 148, 151, 343, 398, 581
GsaI CCCAGC 1 cut(s) 564
HapII CCGG 2 cut(s) 240, 390
Hin1II CATG 3 cut(s) 37, 423, 604
HinfI GANTC 2 cut(s) 220, 318
HpaII CCGG 2 cut(s) 240, 390
HphI GGTGA 1 cut(s) 325
Hpy188I TCNGA 1 cut(s) 486
Hpy188III TCNNGA 1 cut(s) 586
HpyAV CCTTC 3 cut(s) 172, 371, 539
HpyCH4III ACNGT 2 cut(s) 162, 498
HpyCH4V TGCA 8 cut(s) 37, 136, 188, 345, 400, 529, 542, 604
HpyF10VI GCNNNNNNNGC 5 cut(s) 260, 342, 394, 526, 589
HpyF3I CTNAG 2 cut(s) 575, 593
Hsp92II CATG 3 cut(s) 37, 423, 604
Kzo9I GATC 2 cut(s) 21, 287
Lsp1109I GCAGC 6 cut(s) 120, 137, 159, 329, 384, 567
LweI GCATC 2 cut(s) 40, 529
MalI GATC 2 cut(s) 23, 289
MbiI CCGCTC 1 cut(s) 226
MboI GATC 2 cut(s) 21, 287
MboII GAAGA 3 cut(s) 102, 201, 293
MfeI CAATTG 1 cut(s) 255
MhlI GDGCHC 1 cut(s) 309
MluCI AATT 3 cut(s) 255, 446, 534
MspA1I CMGCKG 1 cut(s) 150
MspI CCGG 2 cut(s) 240, 390
MspR9I CCNGG 3 cut(s) 390, 391, 502
MunI CAATTG 1 cut(s) 255
MvaI CCWGG 1 cut(s) 502
MvnI CGCG 2 cut(s) 311, 587
MwoI GCNNNNNNNGC 5 cut(s) 260, 342, 394, 526, 589
NciI CCSGG 2 cut(s) 390, 391
NdeI CATATG 1 cut(s) 332
NdeII GATC 2 cut(s) 21, 287
NlaIII CATG 3 cut(s) 37, 423, 604
NruI TCGCGA 1 cut(s) 587
NspI RCATGY 1 cut(s) 37
PaeI GCATGC 1 cut(s) 37
PaeR7I CTCGAG 1 cut(s) 472
PfeI GAWTC 2 cut(s) 220, 318
PfoI TCCNGGA 1 cut(s) 500
PkrI GCNGC 6 cut(s) 135, 149, 152, 344, 399, 582
Psp6I CCWGG 1 cut(s) 500
PspFI CCCAGC 1 cut(s) 560
PspGI CCWGG 1 cut(s) 500
PspPI GGNCC 1 cut(s) 482
PspXI VCTCGAGB 1 cut(s) 472
PstI CTGCAG 2 cut(s) 347, 402
PvuII CAGCTG 1 cut(s) 150
RruI TCGCGA 1 cut(s) 587
RsaI GTAC 1 cut(s) 568
RsaNI GTAC 1 cut(s) 567
SatI GCNGC 6 cut(s) 134, 148, 151, 343, 398, 581
Sau3AI GATC 2 cut(s) 21, 287
Sau96I GGNCC 1 cut(s) 482
ScrFI CCNGG 3 cut(s) 390, 391, 502
SduI GDGCHC 1 cut(s) 309
SetI ASST 5 cut(s) 75, 152, 344, 513, 594
SfaNI GCATC 2 cut(s) 40, 529
SfcI CTRYAG 2 cut(s) 343, 398
Sfr274I CTCGAG 1 cut(s) 472
SinI GGWCC 1 cut(s) 482
SlaI CTCGAG 1 cut(s) 472
SmaI CCCGGG 1 cut(s) 391
SmlI CTYRAG 2 cut(s) 227, 472
SmoI CTYRAG 2 cut(s) 227, 472
SphI GCATGC 1 cut(s) 37
Sse9I AATT 3 cut(s) 255, 446, 534
SsiI CCGC 3 cut(s) 145, 224, 311
StyD4I CCNGG 3 cut(s) 388, 389, 500
TaaI ACNGT 2 cut(s) 162, 498
TaqI TCGA 1 cut(s) 473
TasI AATT 3 cut(s) 255, 446, 534
TatI WGTACW 1 cut(s) 566
TfiI GAWTC 2 cut(s) 220, 318
TscAI CASTG 1 cut(s) 579
TseI GCWGC 6 cut(s) 133, 147, 150, 342, 397, 580
TspDTI ATGAA 3 cut(s) 17, 201, 319
TspGWI ACGGA 1 cut(s) 372
TspMI CCCGGG 1 cut(s) 389
TspRI CASTG 1 cut(s) 579
VpaK11BI GGWCC 1 cut(s) 482
XagI CCTNNNNNAGG 1 cut(s) 281
XceI RCATGY 1 cut(s) 37
XhoI CTCGAG 1 cut(s) 472
XmaI CCCGGG 1 cut(s) 389
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.