Rw2G053040

U-box domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0016010
Physical Location & Seq
Reverse (-)
80921885 .. 80923057
1173 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G053040.1

Sequence Viewer

Length: 1029 bp
ATGGAGGAACTTCTGCTCCAAAATCTAGTCACAGGAGACGCTGAAGCGCAGATTCGGGCTGCTACTCAACTCGGTAACCTAAGCAGCAAGCAAAGGCACAGTTTGGCTGAGAGAGGTGTTATGCTTCCATTGATATCAATGCTTCATTCCCAAGACTTTGAAGCCATTGAAGCTGCTCTCTTAGCTCTGCTTAGTCTTGCCTTTGGTAGTGAAAGGAACAAGAGATGGATTTTGAAATACGGGGCTTTACCGGCGGTGCTAAGCCTCCTTCAATGTGGAAGCAAAGCGTTGATGGAGCTCACAATAACAGCTTTGATGATTCTCTCATCTTGCAAGGCAAACAAGTTATCAATTGCCTCGTCTGGAGCCATTGAGCAAATCATTGAAATTCTCAATCGAGACTATGCTAATGCTAATGGCATGAACACAAACAAGGACACGATCACTATCAGCATGCAAGCCAGACTTGATGCCGTGGCTACACTCCACAACCTCTCAACTTGCCATCATATTATGCCATCTTTGGTCTCTTCTGGTGTAGTTTCCTCCTTGCTGCAAATAATCCGCAGCTGCGAAAAACCGTCCCAACTGGTTGAGAAGGCTATTGCATTACTTGATGACATTGTTTCTTCATCCAAGATTCCGCTCAAGGAAACAGCCGGAACTTGTGGGGCAATTGGGGCATTAGTTGAGACCCTTGAAGAGGGATCAATGGAAAGCAAAGAGCACGCGGTGAGAATCCTGCTGTTCATATGCCAGAGCTGCAGAGAAAACTACGGAGGATTGATTTTACGGGAAGGAGTAATGCCCGGGTTGCTGCAGTTGAAAGTAGATGGAACATGGAGGGCAAAAACTATGGCAGAGGAATTGCTGTTGCTTTTGAGGGACTGCTCGAGTTATGGTCCGAGTAATCAACAGTCCAGGAATGAGGTTATAGAGCAGATTATGCAAGAAATTGATGCAGAAGGAGAGGAAGTTGCTGGGAGTACAGCACTGAGGCTGCTTGCGAAGCTCAGCATCATGCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Arm KAP

Protein Analysis

342

Amino Acids

37.04

Weight (kDa)

5.4

Isoelectric Point (pI)

52.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARM_ARMC5 PF24768 17 - 139 2.8e-07 ARMC5
ARM_PUB PF25598 125 - 298 1.5e-07 Plant U-box protein ARM repeat region
ARM_ARMC5 PF24768 159 - 335 7e-06 ARMC5
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016010)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14510
malus_domestica MD09G1024900.v1.1 MD17G1026200.v1.1
prunus_persica Prupe.3G292500_v2.0.a1
pyrus_communis pycom17g02130
rosa_chinensis RchiOBHm_Chr2g0173151
rosa_laevigata RLG00000022164
rosa_multiflora Rmu_sc0020537.1_g000001
rosa_roxburghii Rroxscaffold_2G00079180
rosa_rugosa Rorug02G0565700
rosa_samantha Rh2AG645900 Rh2BG656600 Rh2CG621700 Rh2DG670000
rosa_wichuraiana Rw2G053040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 646
AccII CGCG 1 cut(s) 731
AciI CCGC 4 cut(s) 254, 565, 644, 731
AclWI GGATC 1 cut(s) 715
AcsI RAATTY 1 cut(s) 387
AcuI CTGAAG 1 cut(s) 63
AdeI CACNNNGTG 1 cut(s) 733
AfaI GTAC 1 cut(s) 988
AfiI CCNNNNNNNGG 1 cut(s) 703
AgsI TTSAA 7 cut(s) 161, 170, 235, 272, 386, 701, 826
AjnI CCWGG 1 cut(s) 920
AloI GAACNNNNNNTCC 1 cut(s) 32
AluBI AGCT 7 cut(s) 173, 185, 298, 311, 570, 762, 1012
AluI AGCT 7 cut(s) 173, 185, 298, 311, 570, 762, 1012
Alw21I GWGCWC 2 cut(s) 300, 729
Alw26I GTCTC 4 cut(s) 30, 393, 532, 686
AlwI GGATC 1 cut(s) 715
Ama87I CYCGRG 2 cut(s) 809, 892
ApeKI GCWGC 9 cut(s) 59, 84, 173, 553, 567, 570, 762, 817, 1000
ApoI RAATTY 1 cut(s) 387
AspLEI GCGC 1 cut(s) 49
AspS9I GGNCC 1 cut(s) 902
AsuC2I CCSGG 2 cut(s) 810, 811
AsuHPI GGTGA 1 cut(s) 745
AvaI CYCGRG 2 cut(s) 809, 892
AvaII GGWCC 1 cut(s) 902
BanII GRGCYC 1 cut(s) 300
Bbv12I GWGCWC 2 cut(s) 300, 729
BbvI GCAGC 9 cut(s) 46, 96, 160, 540, 557, 579, 749, 804, 987
BccI CCATC 5 cut(s) 219, 286, 513, 526, 827
BceAI ACGGC 1 cut(s) 458
BciT130I CCWGG 1 cut(s) 922
BcnI CCSGG 2 cut(s) 810, 811
BcoDI GTCTC 4 cut(s) 30, 393, 532, 686
BfaI CTAG 1 cut(s) 26
BfmI CTRYAG 2 cut(s) 763, 818
BisI GCNGC 9 cut(s) 60, 85, 174, 554, 568, 571, 763, 818, 1001
BlpI GCTNAGC 2 cut(s) 260, 1013
BlsI GCNGC 9 cut(s) 61, 86, 175, 555, 569, 572, 764, 819, 1002
Bme1390I CCNGG 3 cut(s) 810, 811, 922
Bme18I GGWCC 1 cut(s) 902
BmeT110I CYCGRG 2 cut(s) 809, 892
BmgT120I GGNCC 1 cut(s) 902
BmiI GGNNCC 1 cut(s) 367
BmrFI CCNGG 3 cut(s) 810, 811, 922
BmsI GCATC 2 cut(s) 460, 949
BpmI CTGGAG 1 cut(s) 384
Bpu10I CCTNAGC 1 cut(s) 80
Bpu1102I GCTNAGC 2 cut(s) 260, 1013
BpuEI CTTGAG 1 cut(s) 632
BpuMI CCSGG 2 cut(s) 810, 811
BsaBI GATNNNNATC 1 cut(s) 446
BsaI GGTCTC 2 cut(s) 532, 686
BsaJI CCNNGG 2 cut(s) 474, 809
BsaXI ACNNNNNCTCC 3 cut(s) 30, 960, 990
Bsc4I CCNNNNNNNGG 1 cut(s) 703
Bse118I RCCGGY 1 cut(s) 250
Bse1I ACTGG 1 cut(s) 594
Bse8I GATNNNNATC 1 cut(s) 446
BseBI CCWGG 1 cut(s) 922
BseDI CCNNGG 2 cut(s) 474, 809
BseGI GGATG 1 cut(s) 632
BseJI GATNNNNATC 1 cut(s) 446
BseLI CCNNNNNNNGG 1 cut(s) 703
BseMII CTCAG 3 cut(s) 99, 986, 1027
BseNI ACTGG 1 cut(s) 594
BseXI GCAGC 9 cut(s) 46, 96, 160, 540, 557, 579, 749, 804, 987
BseYI CCCAGC 1 cut(s) 980
Bsh1236I CGCG 1 cut(s) 731
BsiHKAI GWGCWC 2 cut(s) 300, 729
BsiHKCI CYCGRG 2 cut(s) 809, 892
BsiSI CCGG 3 cut(s) 251, 660, 810
BslFI GGGAC 2 cut(s) 568, 899
BslI CCNNNNNNNGG 1 cut(s) 703
BsmAI GTCTC 4 cut(s) 30, 393, 532, 686
BsmBI CGTCTC 1 cut(s) 30
BsmFI GGGAC 2 cut(s) 568, 899
Bso31I GGTCTC 2 cut(s) 532, 686
BsoBI CYCGRG 2 cut(s) 809, 892
Bsp1286I GDGCHC 2 cut(s) 300, 729
Bsp143I GATC 2 cut(s) 441, 707
Bsp1720I GCTNAGC 2 cut(s) 260, 1013
BspACI CCGC 4 cut(s) 254, 565, 644, 731
BspCNI CTCAG 3 cut(s) 100, 987, 1026
BspFNI CGCG 1 cut(s) 731
BspLI GGNNCC 1 cut(s) 367
BspMAI CTGCAG 2 cut(s) 767, 822
BspPI GGATC 1 cut(s) 715
BspTNI GGTCTC 2 cut(s) 532, 686
BsrBI CCGCTC 1 cut(s) 646
BsrFI RCCGGY 1 cut(s) 250
BsrI ACTGG 1 cut(s) 594
BssAI RCCGGY 1 cut(s) 250
BssECI CCNNGG 2 cut(s) 474, 809
BssMI GATC 2 cut(s) 441, 707
Bst2UI CCWGG 1 cut(s) 922
Bst4CI ACNGT 3 cut(s) 101, 582, 918
Bst6I CTCTTC 2 cut(s) 535, 696
BstAPI GCANNNNNTGC 1 cut(s) 946
BstC8I GCNNGC 5 cut(s) 89, 455, 459, 729, 1005
BstDEI CTNAG 7 cut(s) 80, 108, 181, 191, 260, 995, 1013
BstDSI CCRYGG 1 cut(s) 474
BstEII GGTNACC 1 cut(s) 74
BstENI CCTNNNNNAGG 1 cut(s) 701
BstF5I GGATG 1 cut(s) 632
BstFNI CGCG 1 cut(s) 731
BstHHI GCGC 1 cut(s) 49
BstKTI GATC 2 cut(s) 444, 710
BstMAI GTCTC 4 cut(s) 30, 393, 532, 686
BstMBI GATC 2 cut(s) 441, 707
BstMWI GCNNNNNNNGC 8 cut(s) 170, 182, 251, 680, 762, 814, 946, 1009
BstNI CCWGG 1 cut(s) 922
BstNSI RCATGY 1 cut(s) 457
BstPI GGTNACC 1 cut(s) 74
BstSCI CCNGG 3 cut(s) 808, 809, 920
BstSFI CTRYAG 2 cut(s) 763, 818
BstUI CGCG 1 cut(s) 731
BstV1I GCAGC 9 cut(s) 46, 96, 160, 540, 557, 579, 749, 804, 987
BtgI CCRYGG 1 cut(s) 474
BtsCI GGATG 1 cut(s) 632
BtsIMutI CAGTG 1 cut(s) 992
Cac8I GCNNGC 5 cut(s) 89, 455, 459, 729, 1005
CfoI GCGC 1 cut(s) 49
Cfr10I RCCGGY 1 cut(s) 250
Cfr13I GGNCC 1 cut(s) 902
Cfr9I CCCGGG 1 cut(s) 809
CseI GACGC 1 cut(s) 47
Csp6I GTAC 1 cut(s) 987
CviAII CATG 4 cut(s) 421, 454, 840, 1021
CviQI GTAC 1 cut(s) 987
DdeI CTNAG 7 cut(s) 80, 108, 181, 191, 260, 995, 1013
DpnI GATC 2 cut(s) 443, 709
DpnII GATC 2 cut(s) 441, 707
DraIII CACNNNGTG 1 cut(s) 733
Eam1104I CTCTTC 2 cut(s) 535, 696
EarI CTCTTC 2 cut(s) 535, 696
Ecl136II GAGCTC 1 cut(s) 298
Eco24I GRGCYC 1 cut(s) 300
Eco31I GGTCTC 2 cut(s) 532, 686
Eco32I GATATC 1 cut(s) 135
Eco47I GGWCC 1 cut(s) 902
Eco53kI GAGCTC 1 cut(s) 298
Eco57I CTGAAG 1 cut(s) 63
Eco88I CYCGRG 2 cut(s) 809, 892
Eco91I GGTNACC 1 cut(s) 74
EcoICRI GAGCTC 1 cut(s) 298
EcoNI CCTNNNNNAGG 1 cut(s) 701
EcoO65I GGTNACC 1 cut(s) 74
EcoRII CCWGG 1 cut(s) 920
EcoRV GATATC 1 cut(s) 135
EcoT38I GRGCYC 1 cut(s) 300
Esp3I CGTCTC 1 cut(s) 30
FaeI CATG 4 cut(s) 424, 457, 843, 1024
FalI AAGNNNNNCTT 2 cut(s) 450, 482
FaqI GGGAC 2 cut(s) 568, 899
FatI CATG 4 cut(s) 420, 453, 839, 1020
FauNDI CATATG 1 cut(s) 752
Fnu4HI GCNGC 9 cut(s) 60, 85, 174, 554, 568, 571, 763, 818, 1001
FokI GGATG 1 cut(s) 619
FriOI GRGCYC 1 cut(s) 300
Fsp4HI GCNGC 9 cut(s) 60, 85, 174, 554, 568, 571, 763, 818, 1001
FspBI CTAG 1 cut(s) 26
GlaI GCGC 1 cut(s) 48
GluI GCNGC 9 cut(s) 60, 85, 174, 554, 568, 571, 763, 818, 1001
GsaI CCCAGC 1 cut(s) 984
GsuI CTGGAG 1 cut(s) 384
HapII CCGG 3 cut(s) 251, 660, 810
HgaI GACGC 1 cut(s) 47
HhaI GCGC 1 cut(s) 49
Hin1II CATG 4 cut(s) 424, 457, 843, 1024
Hin6I GCGC 1 cut(s) 47
HinP1I GCGC 1 cut(s) 47
HinfI GANTC 4 cut(s) 52, 319, 640, 738
HpaII CCGG 3 cut(s) 251, 660, 810
HphI GGTGA 1 cut(s) 745
Hpy188I TCNGA 1 cut(s) 906
Hpy188III TCNNGA 2 cut(s) 363, 398
HpyAV CCTTC 4 cut(s) 278, 592, 791, 959
HpyCH4III ACNGT 3 cut(s) 101, 582, 918
HpyCH4V TGCA 9 cut(s) 333, 457, 556, 608, 765, 820, 949, 962, 1024
HpyF10VI GCNNNNNNNGC 8 cut(s) 170, 182, 251, 680, 762, 814, 946, 1009
HpyF3I CTNAG 7 cut(s) 80, 108, 181, 191, 260, 995, 1013
Hsp92II CATG 4 cut(s) 424, 457, 843, 1024
HspAI GCGC 1 cut(s) 47
Kzo9I GATC 2 cut(s) 441, 707
LmnI GCTCC 3 cut(s) 21, 295, 365
Lsp1109I GCAGC 9 cut(s) 46, 96, 160, 540, 557, 579, 749, 804, 987
LweI GCATC 2 cut(s) 460, 949
MaeI CTAG 1 cut(s) 26
MaeIII GTNAC 2 cut(s) 28, 74
MalI GATC 2 cut(s) 443, 709
MbiI CCGCTC 1 cut(s) 646
MboI GATC 2 cut(s) 441, 707
MboII GAAGA 3 cut(s) 522, 621, 713
MfeI CAATTG 2 cut(s) 351, 675
MhlI GDGCHC 2 cut(s) 300, 729
MluCI AATT 5 cut(s) 351, 387, 675, 866, 954
MspA1I CMGCKG 1 cut(s) 570
MspI CCGG 3 cut(s) 251, 660, 810
MspR9I CCNGG 3 cut(s) 810, 811, 922
MunI CAATTG 2 cut(s) 351, 675
MvaI CCWGG 1 cut(s) 922
MvnI CGCG 1 cut(s) 731
MwoI GCNNNNNNNGC 8 cut(s) 170, 182, 251, 680, 762, 814, 946, 1009
NciI CCSGG 2 cut(s) 810, 811
NdeI CATATG 1 cut(s) 752
NdeII GATC 2 cut(s) 441, 707
NlaIII CATG 4 cut(s) 424, 457, 843, 1024
NlaIV GGNNCC 1 cut(s) 367
NmuCI GTSAC 1 cut(s) 28
NspI RCATGY 1 cut(s) 457
PaeI GCATGC 1 cut(s) 457
PaeR7I CTCGAG 1 cut(s) 892
PfeI GAWTC 4 cut(s) 52, 319, 640, 738
PfoI TCCNGGA 1 cut(s) 920
PkrI GCNGC 9 cut(s) 61, 86, 175, 555, 569, 572, 764, 819, 1002
Psp124BI GAGCTC 1 cut(s) 300
Psp6I CCWGG 1 cut(s) 920
PspEI GGTNACC 1 cut(s) 74
PspFI CCCAGC 1 cut(s) 980
PspGI CCWGG 1 cut(s) 920
PspN4I GGNNCC 1 cut(s) 367
PspPI GGNCC 1 cut(s) 902
PspXI VCTCGAGB 1 cut(s) 892
PstI CTGCAG 2 cut(s) 767, 822
PvuII CAGCTG 1 cut(s) 570
RsaI GTAC 1 cut(s) 988
RsaNI GTAC 1 cut(s) 987
SacI GAGCTC 1 cut(s) 300
SatI GCNGC 9 cut(s) 60, 85, 174, 554, 568, 571, 763, 818, 1001
Sau3AI GATC 2 cut(s) 441, 707
Sau96I GGNCC 1 cut(s) 902
ScrFI CCNGG 3 cut(s) 810, 811, 922
SduI GDGCHC 2 cut(s) 300, 729
SfaNI GCATC 2 cut(s) 460, 949
SfcI CTRYAG 2 cut(s) 763, 818
Sfr274I CTCGAG 1 cut(s) 892
SinI GGWCC 1 cut(s) 902
SlaI CTCGAG 1 cut(s) 892
SmaI CCCGGG 1 cut(s) 811
SmlI CTYRAG 2 cut(s) 647, 892
SmoI CTYRAG 2 cut(s) 647, 892
SphI GCATGC 1 cut(s) 457
Sse9I AATT 5 cut(s) 351, 387, 675, 866, 954
SsiI CCGC 4 cut(s) 254, 565, 644, 731
SspMI CTAG 1 cut(s) 26
SstI GAGCTC 1 cut(s) 300
StyD4I CCNGG 3 cut(s) 808, 809, 920
TaaI ACNGT 3 cut(s) 101, 582, 918
TaqI TCGA 2 cut(s) 397, 893
TasI AATT 5 cut(s) 351, 387, 675, 866, 954
TatI WGTACW 1 cut(s) 986
TfiI GAWTC 4 cut(s) 52, 319, 640, 738
TscAI CASTG 1 cut(s) 999
TseFI GTSAC 1 cut(s) 28
TseI GCWGC 9 cut(s) 59, 84, 173, 553, 567, 570, 762, 817, 1000
Tsp45I GTSAC 1 cut(s) 28
TspDTI ATGAA 4 cut(s) 134, 437, 621, 739
TspGWI ACGGA 1 cut(s) 792
TspMI CCCGGG 1 cut(s) 809
TspRI CASTG 1 cut(s) 999
VpaK11BI GGWCC 1 cut(s) 902
XagI CCTNNNNNAGG 1 cut(s) 701
XapI RAATTY 1 cut(s) 387
XceI RCATGY 1 cut(s) 457
XhoI CTCGAG 1 cut(s) 892
XmaI CCCGGG 1 cut(s) 809
XspI CTAG 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.