Rmu_sc0020537.1_g000001

U-box domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0020537.1
OG0016010
Physical Location & Seq
Forward (+)
1 .. 2243
2243 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0020537.1_g000001.1.cds

Sequence Viewer

Length: 1234 bp
ctttgaagccattgaagctgctctcttagctctgcttagtcttgcctttggtagtgaaaggaacaagagatggattttgaaatacggggctttaccggcggtgctaagcctccttcaatgtggaagcaaagcgttgatggagctcacaataacagctttgatgattctctcatcttgcaaggcaaacaagttatcaattgcctcgtctggagccattgagcaaatcattgaaattctcaatcgagactatgctaatgctaatggcatgaacacaaacaaggacacgatcactatcagcatgcaagccagacttgatgccgtggctacactccacaacctctcaacttgccatcatattatgccatctttggtctcttctggtgtagtttcctccttgctgcaaataatcctcagcggcgaaaaaccgtcccaactggttgagaaggctattgcattacttgatgacattgtttcttcatccaagattccgctcaaggaaacagccggaacttgtggggcaattggggcattagttgagacccttgaagagggatcaatggaaagcaaagagcacgcggtgagaatcctgctgttcatatgccagagctgcagagaaaactacggaggattgattttacgggaaggagtaatgcccgggttgctgcagttgaaagtagatggaacatggagggcaaaaactatggcagaggaattgctgttgcttttgagggactgctcgagttatggtccgagtaatcaacagtccaggaatgaggttatagagcagattatgcaagaaattgatgcagaaggagaggaagttgctgggagtggagacaatggcattggttacccatcaaatgcagggttcgtttgtgacatatccgccgaggcctttgtcatggagcaaggggatgaagttgaagtggtatgtaacaacacttcacatggggcttctcccttgcgtggaccaaaacttaaaccattgagagtttcagccttcaagggtaatgcccagaatgataaatctggaggtagaaaaggtggatcaaagcttcctaagaattcggtcaaactaaaagagaatgaggatatcaaagcgggtgaagtagtagacgggattttgggagaagaacctcctcaaaaggtgatatcagaaactgagcacgagactcaaaacgaggagagatggtattctaaggatggtttggtgcagtttcatcttgatgtctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Arm KAP

Protein Analysis

410

Amino Acids

44.15

Weight (kDa)

5.07

Isoelectric Point (pI)

45.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016010)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14510
malus_domestica MD09G1024900.v1.1 MD17G1026200.v1.1
prunus_persica Prupe.3G292500_v2.0.a1
pyrus_communis pycom17g02130
rosa_chinensis RchiOBHm_Chr2g0173151
rosa_laevigata RLG00000022164
rosa_multiflora Rmu_sc0020537.1_g000001
rosa_roxburghii Rroxscaffold_2G00079180
rosa_rugosa Rorug02G0565700
rosa_samantha Rh2AG645900 Rh2BG656600 Rh2CG621700 Rh2DG670000
rosa_wichuraiana Rw2G053040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 491
AccI GTMKAC 1 cut(s) 1114
AccII CGCG 1 cut(s) 576
AciI CCGC 6 cut(s) 99, 415, 489, 576, 886, 1101
AclWI GGATC 2 cut(s) 560, 1055
AcsI RAATTY 2 cut(s) 232, 1064
AdeI CACNNNGTG 1 cut(s) 578
AfiI CCNNNNNNNGG 2 cut(s) 548, 966
AgsI TTSAA 9 cut(s) 6, 15, 80, 117, 231, 546, 671, 924, 1004
AjnI CCWGG 1 cut(s) 765
AluBI AGCT 6 cut(s) 18, 30, 143, 156, 607, 1055
AluI AGCT 6 cut(s) 18, 30, 143, 156, 607, 1055
Alw21I GWGCWC 3 cut(s) 145, 574, 1168
Alw26I GTCTC 5 cut(s) 238, 377, 531, 829, 1164
AlwI GGATC 2 cut(s) 560, 1055
AlwNI CAGNNNCTG 1 cut(s) 1161
Ama87I CYCGRG 2 cut(s) 654, 737
AoxI GGCC 1 cut(s) 892
ApeKI GCWGC 4 cut(s) 18, 398, 607, 662
ApoI RAATTY 2 cut(s) 232, 1064
AspS9I GGNCC 2 cut(s) 747, 969
AsuC2I CCSGG 2 cut(s) 655, 656
AsuHPI GGTGA 3 cut(s) 590, 1116, 1160
AvaI CYCGRG 2 cut(s) 654, 737
AvaII GGWCC 2 cut(s) 747, 969
BanII GRGCYC 1 cut(s) 145
BarI GAAGNNNNNNTAC 2 cut(s) 926, 958
BauI CACGAG 1 cut(s) 1167
Bbv12I GWGCWC 3 cut(s) 145, 574, 1168
BbvCI CCTCAGC 1 cut(s) 411
BbvI GCAGC 4 cut(s) 5, 385, 594, 649
BccI CCATC 8 cut(s) 64, 131, 358, 371, 672, 863, 1183, 1197
BceAI ACGGC 1 cut(s) 303
BciT130I CCWGG 1 cut(s) 767
BcnI CCSGG 2 cut(s) 655, 656
BcoDI GTCTC 5 cut(s) 238, 377, 531, 829, 1164
BfaI CTAG 1 cut(s) 1232
BfmI CTRYAG 2 cut(s) 608, 663
BisI GCNGC 5 cut(s) 19, 399, 416, 608, 663
BlpI GCTNAGC 1 cut(s) 105
BlsI GCNGC 5 cut(s) 20, 400, 417, 609, 664
Bme1390I CCNGG 3 cut(s) 655, 656, 767
Bme18I GGWCC 2 cut(s) 747, 969
BmeT110I CYCGRG 2 cut(s) 654, 737
BmgT120I GGNCC 2 cut(s) 747, 969
BmiI GGNNCC 1 cut(s) 212
BmrFI CCNGG 3 cut(s) 655, 656, 767
BmsI GCATC 2 cut(s) 305, 794
BpmI CTGGAG 2 cut(s) 229, 1051
Bpu10I CCTNAGC 1 cut(s) 411
Bpu1102I GCTNAGC 1 cut(s) 105
BpuEI CTTGAG 1 cut(s) 477
BpuMI CCSGG 2 cut(s) 655, 656
BsaBI GATNNNNATC 1 cut(s) 291
BsaI GGTCTC 2 cut(s) 377, 531
BsaJI CCNNGG 3 cut(s) 319, 654, 889
BsaXI ACNNNNNCTCC 4 cut(s) 805, 835, 1176, 1206
Bsc4I CCNNNNNNNGG 2 cut(s) 548, 966
Bse118I RCCGGY 1 cut(s) 95
Bse1I ACTGG 1 cut(s) 439
Bse8I GATNNNNATC 1 cut(s) 291
BseBI CCWGG 1 cut(s) 767
BseDI CCNNGG 3 cut(s) 319, 654, 889
BseGI GGATG 3 cut(s) 477, 920, 1208
BseJI GATNNNNATC 1 cut(s) 291
BseLI CCNNNNNNNGG 2 cut(s) 548, 966
BseMII CTCAG 2 cut(s) 425, 1153
BseNI ACTGG 1 cut(s) 439
BseRI GAGGAG 2 cut(s) 1129, 1197
BseXI GCAGC 4 cut(s) 5, 385, 594, 649
BseYI CCCAGC 1 cut(s) 825
BsgI GTGCAG 1 cut(s) 1233
Bsh1236I CGCG 1 cut(s) 576
BshFI GGCC 1 cut(s) 894
BsiHKAI GWGCWC 3 cut(s) 145, 574, 1168
BsiHKCI CYCGRG 2 cut(s) 654, 737
BsiSI CCGG 3 cut(s) 96, 505, 655
BslFI GGGAC 2 cut(s) 413, 744
BslI CCNNNNNNNGG 2 cut(s) 548, 966
BsmAI GTCTC 5 cut(s) 238, 377, 531, 829, 1164
BsmFI GGGAC 2 cut(s) 413, 744
BsnI GGCC 1 cut(s) 894
Bso31I GGTCTC 2 cut(s) 377, 531
BsoBI CYCGRG 2 cut(s) 654, 737
Bsp1286I GDGCHC 3 cut(s) 145, 574, 1168
Bsp143I GATC 3 cut(s) 286, 552, 1047
Bsp1720I GCTNAGC 1 cut(s) 105
BspACI CCGC 6 cut(s) 99, 415, 489, 576, 886, 1101
BspANI GGCC 1 cut(s) 894
BspCNI CTCAG 2 cut(s) 424, 1154
BspFNI CGCG 1 cut(s) 576
BspLI GGNNCC 1 cut(s) 212
BspMAI CTGCAG 2 cut(s) 612, 667
BspPI GGATC 2 cut(s) 560, 1055
BspTNI GGTCTC 2 cut(s) 377, 531
BsrBI CCGCTC 1 cut(s) 491
BsrFI RCCGGY 1 cut(s) 95
BsrI ACTGG 1 cut(s) 439
BssAI RCCGGY 1 cut(s) 95
BssECI CCNNGG 3 cut(s) 319, 654, 889
BssMI GATC 3 cut(s) 286, 552, 1047
BssSI CACGAG 1 cut(s) 1167
Bst2BI CACGAG 1 cut(s) 1167
Bst2UI CCWGG 1 cut(s) 767
Bst4CI ACNGT 2 cut(s) 427, 763
Bst6I CTCTTC 2 cut(s) 380, 541
BstAPI GCANNNNNTGC 1 cut(s) 791
BstC8I GCNNGC 3 cut(s) 300, 304, 574
BstDEI CTNAG 7 cut(s) 26, 36, 105, 411, 1060, 1162, 1198
BstDSI CCRYGG 1 cut(s) 319
BstEII GGTNACC 1 cut(s) 849
BstENI CCTNNNNNAGG 1 cut(s) 546
BstF5I GGATG 3 cut(s) 477, 920, 1208
BstFNI CGCG 1 cut(s) 576
BstKTI GATC 3 cut(s) 289, 555, 1050
BstMAI GTCTC 5 cut(s) 238, 377, 531, 829, 1164
BstMBI GATC 3 cut(s) 286, 552, 1047
BstMWI GCNNNNNNNGC 7 cut(s) 15, 27, 96, 525, 607, 659, 791
BstNI CCWGG 1 cut(s) 767
BstNSI RCATGY 1 cut(s) 302
BstPI GGTNACC 1 cut(s) 849
BstSCI CCNGG 3 cut(s) 653, 654, 765
BstSFI CTRYAG 2 cut(s) 608, 663
BstUI CGCG 1 cut(s) 576
BstV1I GCAGC 4 cut(s) 5, 385, 594, 649
BsuRI GGCC 1 cut(s) 894
BtgI CCRYGG 1 cut(s) 319
BtsCI GGATG 3 cut(s) 477, 920, 1208
Cac8I GCNNGC 3 cut(s) 300, 304, 574
CaiI CAGNNNCTG 1 cut(s) 1161
Cfr10I RCCGGY 1 cut(s) 95
Cfr13I GGNCC 2 cut(s) 747, 969
Cfr9I CCCGGG 1 cut(s) 654
CviAII CATG 5 cut(s) 266, 299, 685, 902, 948
DdeI CTNAG 7 cut(s) 26, 36, 105, 411, 1060, 1162, 1198
DpnI GATC 3 cut(s) 288, 554, 1049
DpnII GATC 3 cut(s) 286, 552, 1047
DraIII CACNNNGTG 1 cut(s) 578
Eam1104I CTCTTC 2 cut(s) 380, 541
EarI CTCTTC 2 cut(s) 380, 541
EciI GGCGGA 1 cut(s) 875
Ecl136II GAGCTC 1 cut(s) 143
Eco147I AGGCCT 1 cut(s) 894
Eco24I GRGCYC 1 cut(s) 145
Eco31I GGTCTC 2 cut(s) 377, 531
Eco32I GATATC 2 cut(s) 1094, 1153
Eco47I GGWCC 2 cut(s) 747, 969
Eco53kI GAGCTC 1 cut(s) 143
Eco88I CYCGRG 2 cut(s) 654, 737
Eco91I GGTNACC 1 cut(s) 849
EcoICRI GAGCTC 1 cut(s) 143
EcoNI CCTNNNNNAGG 1 cut(s) 546
EcoO65I GGTNACC 1 cut(s) 849
EcoRI GAATTC 1 cut(s) 1064
EcoRII CCWGG 1 cut(s) 765
EcoRV GATATC 2 cut(s) 1094, 1153
EcoT38I GRGCYC 1 cut(s) 145
FaeI CATG 5 cut(s) 269, 302, 688, 905, 951
FalI AAGNNNNNCTT 2 cut(s) 295, 327
FaqI GGGAC 2 cut(s) 413, 744
FatI CATG 5 cut(s) 265, 298, 684, 901, 947
FauI CCCGC 1 cut(s) 1094
FauNDI CATATG 1 cut(s) 597
FblI GTMKAC 1 cut(s) 1114
Fnu4HI GCNGC 5 cut(s) 19, 399, 416, 608, 663
FokI GGATG 3 cut(s) 464, 927, 1215
FriOI GRGCYC 1 cut(s) 145
Fsp4HI GCNGC 5 cut(s) 19, 399, 416, 608, 663
FspBI CTAG 1 cut(s) 1232
GluI GCNGC 5 cut(s) 19, 399, 416, 608, 663
GsaI CCCAGC 1 cut(s) 829
GsuI CTGGAG 2 cut(s) 229, 1051
HaeIII GGCC 1 cut(s) 894
HapII CCGG 3 cut(s) 96, 505, 655
Hin1II CATG 5 cut(s) 269, 302, 688, 905, 951
HindIII AAGCTT 1 cut(s) 1053
HinfI GANTC 4 cut(s) 164, 485, 583, 1172
HpaII CCGG 3 cut(s) 96, 505, 655
HphI GGTGA 3 cut(s) 590, 1116, 1160
Hpy166II GTNNAC 2 cut(s) 969, 1115
Hpy188I TCNGA 2 cut(s) 751, 1157
Hpy188III TCNNGA 4 cut(s) 208, 243, 1030, 1224
Hpy8I GTNNAC 2 cut(s) 969, 1115
HpyAV CCTTC 5 cut(s) 123, 437, 636, 804, 1010
HpyCH4III ACNGT 2 cut(s) 427, 763
HpyF10VI GCNNNNNNNGC 7 cut(s) 15, 27, 96, 525, 607, 659, 791
HpyF3I CTNAG 7 cut(s) 26, 36, 105, 411, 1060, 1162, 1198
Hsp92II CATG 5 cut(s) 269, 302, 688, 905, 951
Kzo9I GATC 3 cut(s) 286, 552, 1047
LmnI GCTCC 3 cut(s) 140, 210, 905
Lsp1109I GCAGC 4 cut(s) 5, 385, 594, 649
LweI GCATC 2 cut(s) 305, 794
MaeI CTAG 1 cut(s) 1232
MaeIII GTNAC 3 cut(s) 849, 876, 933
MalI GATC 3 cut(s) 288, 554, 1049
MbiI CCGCTC 1 cut(s) 491
MboI GATC 3 cut(s) 286, 552, 1047
MboII GAAGA 4 cut(s) 367, 466, 558, 1143
MfeI CAATTG 2 cut(s) 196, 520
MhlI GDGCHC 3 cut(s) 145, 574, 1168
MluCI AATT 6 cut(s) 196, 232, 520, 711, 799, 1064
MlyI GAGTC 1 cut(s) 1166
MseI TTAA 1 cut(s) 979
MslI CAYNNNNRTG 1 cut(s) 1225
MspA1I CMGCKG 1 cut(s) 415
MspI CCGG 3 cut(s) 96, 505, 655
MspR9I CCNGG 3 cut(s) 655, 656, 767
MunI CAATTG 2 cut(s) 196, 520
MvaI CCWGG 1 cut(s) 767
MvnI CGCG 1 cut(s) 576
MwoI GCNNNNNNNGC 7 cut(s) 15, 27, 96, 525, 607, 659, 791
NciI CCSGG 2 cut(s) 655, 656
NdeI CATATG 1 cut(s) 597
NdeII GATC 3 cut(s) 286, 552, 1047
NlaIII CATG 5 cut(s) 269, 302, 688, 905, 951
NlaIV GGNNCC 1 cut(s) 212
NmeAIII GCCGAG 1 cut(s) 914
NmuCI GTSAC 1 cut(s) 876
NspI RCATGY 1 cut(s) 302
PaeI GCATGC 1 cut(s) 302
PaeR7I CTCGAG 1 cut(s) 737
PceI AGGCCT 1 cut(s) 894
PfeI GAWTC 3 cut(s) 164, 485, 583
PfoI TCCNGGA 1 cut(s) 765
PkrI GCNGC 5 cut(s) 20, 400, 417, 609, 664
PleI GAGTC 1 cut(s) 1166
PpsI GAGTC 1 cut(s) 1166
Psp124BI GAGCTC 1 cut(s) 145
Psp6I CCWGG 1 cut(s) 765
PspEI GGTNACC 1 cut(s) 849
PspFI CCCAGC 1 cut(s) 825
PspGI CCWGG 1 cut(s) 765
PspN4I GGNNCC 1 cut(s) 212
PspPI GGNCC 2 cut(s) 747, 969
PspXI VCTCGAGB 1 cut(s) 737
PstI CTGCAG 2 cut(s) 612, 667
PstNI CAGNNNCTG 1 cut(s) 1161
RseI CAYNNNNRTG 1 cut(s) 1225
SacI GAGCTC 1 cut(s) 145
SaqAI TTAA 1 cut(s) 979
SatI GCNGC 5 cut(s) 19, 399, 416, 608, 663
Sau3AI GATC 3 cut(s) 286, 552, 1047
Sau96I GGNCC 2 cut(s) 747, 969
SchI GAGTC 1 cut(s) 1166
ScrFI CCNGG 3 cut(s) 655, 656, 767
SduI GDGCHC 3 cut(s) 145, 574, 1168
SfaNI GCATC 2 cut(s) 305, 794
SfcI CTRYAG 2 cut(s) 608, 663
Sfr274I CTCGAG 1 cut(s) 737
SinI GGWCC 2 cut(s) 747, 969
SlaI CTCGAG 1 cut(s) 737
SmaI CCCGGG 1 cut(s) 656
SmiMI CAYNNNNRTG 1 cut(s) 1225
SmlI CTYRAG 2 cut(s) 492, 737
SmoI CTYRAG 2 cut(s) 492, 737
SphI GCATGC 1 cut(s) 302
Sse9I AATT 6 cut(s) 196, 232, 520, 711, 799, 1064
SseBI AGGCCT 1 cut(s) 894
SsiI CCGC 6 cut(s) 99, 415, 489, 576, 886, 1101
SspMI CTAG 1 cut(s) 1232
SstI GAGCTC 1 cut(s) 145
StuI AGGCCT 1 cut(s) 894
StyD4I CCNGG 3 cut(s) 653, 654, 765
TaaI ACNGT 2 cut(s) 427, 763
TaqI TCGA 2 cut(s) 242, 738
TaqII GACCGA 1 cut(s) 1058
TasI AATT 6 cut(s) 196, 232, 520, 711, 799, 1064
TauI GCSGC 1 cut(s) 418
TfiI GAWTC 3 cut(s) 164, 485, 583
Tru1I TTAA 1 cut(s) 979
Tru9I TTAA 1 cut(s) 979
TseFI GTSAC 1 cut(s) 876
TseI GCWGC 4 cut(s) 18, 398, 607, 662
Tsp45I GTSAC 1 cut(s) 876
TspDTI ATGAA 5 cut(s) 282, 466, 584, 931, 1209
TspGWI ACGGA 1 cut(s) 637
TspMI CCCGGG 1 cut(s) 654
VpaK11BI GGWCC 2 cut(s) 747, 969
XagI CCTNNNNNAGG 1 cut(s) 546
XapI RAATTY 2 cut(s) 232, 1064
XceI RCATGY 1 cut(s) 302
XhoI CTCGAG 1 cut(s) 737
XmaI CCCGGG 1 cut(s) 654
XmiI GTMKAC 1 cut(s) 1114
XspI CTAG 1 cut(s) 1232
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.