Rh2DG670000

U-box domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0016010
Physical Location & Seq
Reverse (-)
89348210 .. 89349787
1578 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG670000.1

Sequence Viewer

Length: 1128 bp
ATGGATCAGTACAAAATCTCTTCAAGCAACCAATCCCACACAGAAAACCCTCTACATATAAAAAAAACAGAATCTGGAGAGCTTAGAGAGCTTCCTTCCATGGAGGAACTTCTGCTCCAAAATCTAGTCACAGGAGACGCTGAAGCGCAGATTCGGGCTGCTACTCAACTCGGTAACCTAAGCAGCAAGCAAAGGCACAGTTTGGCTGAGAGAGGTGTTATGCTTCCATTGATATCAATGCTTCATTCCCAAGACTTTGAAGCTATTGAAGCTGCTCTCTTAGCTCTGCTTAGTCTTGCCTTTGGTAGTGAAAGGAATAAGAGATGGATTTTGAAATACGGGGCTTTACCGGCGGTGCTAAGCCTCCTTCAATGTGGAAGCAAAGCGTTGATGGAGCTCACAATAACAGCTTTGATGATTCTCTCATCTTGCAAGGCAAACAAGTTATCAATTGCCTCGTCTGGAGCCATTGAGCAAATCATTGAAATTCTCAATCGAGACTATGCTAATGCTAATGGCATGAACACAAACAAGGACACGATCACTATCAGCATGCAAGCCAGACTTGATGCCGTGGCTACACTCCACAACCTCTCAACTTGCCATCATATTATGCCATCTTTGGTCTCTTCTGGTGTAGTTTCCTCCTTGCTGCAAATAATCCGCAGCTGCGAAAAACCGTCCCAACTGGTTGAGAAGGCTATTGCATTACTTGATGACATTGTTTCTTCATCCAAGATTCCGCTCAAGGAAACAGCCGGAACTTGTGGGGCAATTGGGGCATTAGTTGAGACCCTTGAAGAGGGATCAATGGAAAGCAAAGAGCACGCAGTGAGAATCCTGCTGTTCATATGCCAGAGCTGCAGAGAAAACTACGGAGGATTGATTTTACGGGAAGGAGTAATGCCCGGGTTGCTGCAGTTGAAAGTAGATGGAACATGGAGGGCAAAAACTATGGCAGAGGAATTGCTGTTGCTTTTGAGGGACTGCTCGAGTCATGGTCCGAGTAATCAACAGTCCAGGAATGAGGTTATAGAGCAGATTATGCAAGAAATTGATGCAGAAGGAGAGGAAGTTGCTGGGAGTACAGCACTGAGGCTGCTCGCGAAGCTCAGCATCATGCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Arm KAP

Protein Analysis

375

Amino Acids

40.78

Weight (kDa)

5.57

Isoelectric Point (pI)

53.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARM_ARMC5 PF24768 50 - 172 3.2e-07 ARMC5
ARM_PUB PF25598 157 - 331 1.9e-07 Plant U-box protein ARM repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016010)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14510
malus_domestica MD09G1024900.v1.1 MD17G1026200.v1.1
prunus_persica Prupe.3G292500_v2.0.a1
pyrus_communis pycom17g02130
rosa_chinensis RchiOBHm_Chr2g0173151
rosa_laevigata RLG00000022164
rosa_multiflora Rmu_sc0020537.1_g000001
rosa_roxburghii Rroxscaffold_2G00079180
rosa_rugosa Rorug02G0565700
rosa_samantha Rh2AG645900 Rh2BG656600 Rh2CG621700 Rh2DG670000
rosa_wichuraiana Rw2G053040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 745
AccII CGCG 1 cut(s) 1106
AciI CCGC 3 cut(s) 353, 664, 743
AclWI GGATC 2 cut(s) 12, 814
AcsI RAATTY 1 cut(s) 486
AcuI CTGAAG 1 cut(s) 162
AdeI CACNNNGTG 1 cut(s) 832
AfaI GTAC 2 cut(s) 11, 1087
AfiI CCNNNNNNNGG 1 cut(s) 802
AgsI TTSAA 8 cut(s) 24, 260, 269, 334, 371, 485, 800, 925
AjnI CCWGG 1 cut(s) 1019
AloI GAACNNNNNNTCC 2 cut(s) 99, 131
Alw21I GWGCWC 2 cut(s) 399, 828
Alw26I GTCTC 4 cut(s) 129, 492, 631, 785
AlwI GGATC 2 cut(s) 12, 814
AlwNI CAGNNNCTG 1 cut(s) 74
Ama87I CYCGRG 2 cut(s) 908, 991
ApeKI GCWGC 9 cut(s) 158, 183, 272, 652, 666, 669, 861, 916, 1099
ApoI RAATTY 1 cut(s) 486
AspLEI GCGC 1 cut(s) 148
AspS9I GGNCC 1 cut(s) 1001
AsuC2I CCSGG 2 cut(s) 909, 910
AvaI CYCGRG 2 cut(s) 908, 991
AvaII GGWCC 1 cut(s) 1001
BanII GRGCYC 1 cut(s) 399
Bbv12I GWGCWC 2 cut(s) 399, 828
BbvI GCAGC 9 cut(s) 145, 195, 259, 639, 656, 678, 848, 903, 1086
BccI CCATC 5 cut(s) 318, 385, 612, 625, 926
BceAI ACGGC 1 cut(s) 557
BciT130I CCWGG 1 cut(s) 1021
BcnI CCSGG 2 cut(s) 909, 910
BcoDI GTCTC 4 cut(s) 129, 492, 631, 785
BfaI CTAG 1 cut(s) 125
BfmI CTRYAG 2 cut(s) 862, 917
BisI GCNGC 9 cut(s) 159, 184, 273, 653, 667, 670, 862, 917, 1100
BlpI GCTNAGC 2 cut(s) 359, 1112
BlsI GCNGC 9 cut(s) 160, 185, 274, 654, 668, 671, 863, 918, 1101
Bme1390I CCNGG 3 cut(s) 909, 910, 1021
Bme18I GGWCC 1 cut(s) 1001
BmeT110I CYCGRG 2 cut(s) 908, 991
BmgT120I GGNCC 1 cut(s) 1001
BmiI GGNNCC 1 cut(s) 466
BmrFI CCNGG 3 cut(s) 909, 910, 1021
BmsI GCATC 2 cut(s) 559, 1048
BpmI CTGGAG 2 cut(s) 96, 483
Bpu10I CCTNAGC 1 cut(s) 179
Bpu1102I GCTNAGC 2 cut(s) 359, 1112
BpuEI CTTGAG 1 cut(s) 731
BpuMI CCSGG 2 cut(s) 909, 910
BsaBI GATNNNNATC 1 cut(s) 545
BsaI GGTCTC 2 cut(s) 631, 785
BsaJI CCNNGG 3 cut(s) 99, 573, 908
BsaXI ACNNNNNCTCC 4 cut(s) 99, 129, 1059, 1089
Bsc4I CCNNNNNNNGG 1 cut(s) 802
Bse118I RCCGGY 1 cut(s) 349
Bse1I ACTGG 1 cut(s) 693
Bse8I GATNNNNATC 1 cut(s) 545
BseBI CCWGG 1 cut(s) 1021
BseDI CCNNGG 3 cut(s) 99, 573, 908
BseGI GGATG 1 cut(s) 731
BseJI GATNNNNATC 1 cut(s) 545
BseLI CCNNNNNNNGG 1 cut(s) 802
BseMII CTCAG 3 cut(s) 198, 1085, 1126
BseNI ACTGG 1 cut(s) 693
BseXI GCAGC 9 cut(s) 145, 195, 259, 639, 656, 678, 848, 903, 1086
BseYI CCCAGC 1 cut(s) 1079
Bsh1236I CGCG 1 cut(s) 1106
BsiHKAI GWGCWC 2 cut(s) 399, 828
BsiHKCI CYCGRG 2 cut(s) 908, 991
BsiSI CCGG 3 cut(s) 350, 759, 909
BslFI GGGAC 2 cut(s) 667, 998
BslI CCNNNNNNNGG 1 cut(s) 802
BsmAI GTCTC 4 cut(s) 129, 492, 631, 785
BsmBI CGTCTC 1 cut(s) 129
BsmFI GGGAC 2 cut(s) 667, 998
Bso31I GGTCTC 2 cut(s) 631, 785
BsoBI CYCGRG 2 cut(s) 908, 991
Bsp1286I GDGCHC 2 cut(s) 399, 828
Bsp143I GATC 3 cut(s) 4, 540, 806
Bsp1720I GCTNAGC 2 cut(s) 359, 1112
Bsp19I CCATGG 1 cut(s) 99
Bsp68I TCGCGA 1 cut(s) 1106
BspACI CCGC 3 cut(s) 353, 664, 743
BspCNI CTCAG 3 cut(s) 199, 1086, 1125
BspFNI CGCG 1 cut(s) 1106
BspLI GGNNCC 1 cut(s) 466
BspMAI CTGCAG 2 cut(s) 866, 921
BspPI GGATC 2 cut(s) 12, 814
BspTNI GGTCTC 2 cut(s) 631, 785
BsrBI CCGCTC 1 cut(s) 745
BsrFI RCCGGY 1 cut(s) 349
BsrI ACTGG 1 cut(s) 693
BssAI RCCGGY 1 cut(s) 349
BssECI CCNNGG 3 cut(s) 99, 573, 908
BssMI GATC 3 cut(s) 4, 540, 806
BssT1I CCWWGG 1 cut(s) 99
Bst2UI CCWGG 1 cut(s) 1021
Bst4CI ACNGT 3 cut(s) 200, 681, 1017
Bst6I CTCTTC 3 cut(s) 25, 634, 795
BstAPI GCANNNNNTGC 1 cut(s) 1045
BstC8I GCNNGC 5 cut(s) 188, 554, 558, 828, 1104
BstDEI CTNAG 8 cut(s) 83, 179, 207, 280, 290, 359, 1094, 1112
BstDSI CCRYGG 2 cut(s) 99, 573
BstEII GGTNACC 1 cut(s) 173
BstENI CCTNNNNNAGG 1 cut(s) 800
BstF5I GGATG 1 cut(s) 731
BstFNI CGCG 1 cut(s) 1106
BstHHI GCGC 1 cut(s) 148
BstKTI GATC 3 cut(s) 7, 543, 809
BstMAI GTCTC 4 cut(s) 129, 492, 631, 785
BstMBI GATC 3 cut(s) 4, 540, 806
BstMWI GCNNNNNNNGC 9 cut(s) 88, 269, 281, 350, 779, 861, 913, 1045, 1108
BstNI CCWGG 1 cut(s) 1021
BstNSI RCATGY 1 cut(s) 556
BstPI GGTNACC 1 cut(s) 173
BstSCI CCNGG 3 cut(s) 907, 908, 1019
BstSFI CTRYAG 2 cut(s) 862, 917
BstUI CGCG 1 cut(s) 1106
BstV1I GCAGC 9 cut(s) 145, 195, 259, 639, 656, 678, 848, 903, 1086
BtgI CCRYGG 2 cut(s) 99, 573
BtsCI GGATG 1 cut(s) 731
BtsI GCAGTG 1 cut(s) 837
BtsIMutI CAGTG 2 cut(s) 837, 1091
BtuMI TCGCGA 1 cut(s) 1106
Cac8I GCNNGC 5 cut(s) 188, 554, 558, 828, 1104
CaiI CAGNNNCTG 1 cut(s) 74
CfoI GCGC 1 cut(s) 148
Cfr10I RCCGGY 1 cut(s) 349
Cfr13I GGNCC 1 cut(s) 1001
Cfr9I CCCGGG 1 cut(s) 908
CseI GACGC 1 cut(s) 146
Csp6I GTAC 2 cut(s) 10, 1086
CviAII CATG 6 cut(s) 100, 520, 553, 939, 998, 1120
CviQI GTAC 2 cut(s) 10, 1086
DdeI CTNAG 8 cut(s) 83, 179, 207, 280, 290, 359, 1094, 1112
DpnI GATC 3 cut(s) 6, 542, 808
DpnII GATC 3 cut(s) 4, 540, 806
DraIII CACNNNGTG 1 cut(s) 832
Eam1104I CTCTTC 3 cut(s) 25, 634, 795
EarI CTCTTC 3 cut(s) 25, 634, 795
Ecl136II GAGCTC 1 cut(s) 397
Eco130I CCWWGG 1 cut(s) 99
Eco24I GRGCYC 1 cut(s) 399
Eco31I GGTCTC 2 cut(s) 631, 785
Eco32I GATATC 1 cut(s) 234
Eco47I GGWCC 1 cut(s) 1001
Eco53kI GAGCTC 1 cut(s) 397
Eco57I CTGAAG 1 cut(s) 162
Eco88I CYCGRG 2 cut(s) 908, 991
Eco91I GGTNACC 1 cut(s) 173
EcoICRI GAGCTC 1 cut(s) 397
EcoNI CCTNNNNNAGG 1 cut(s) 800
EcoO65I GGTNACC 1 cut(s) 173
EcoRII CCWGG 1 cut(s) 1019
EcoRV GATATC 1 cut(s) 234
EcoT14I CCWWGG 1 cut(s) 99
EcoT38I GRGCYC 1 cut(s) 399
ErhI CCWWGG 1 cut(s) 99
Esp3I CGTCTC 1 cut(s) 129
FaeI CATG 6 cut(s) 103, 523, 556, 942, 1001, 1123
FalI AAGNNNNNCTT 2 cut(s) 549, 581
FaqI GGGAC 2 cut(s) 667, 998
FatI CATG 6 cut(s) 99, 519, 552, 938, 997, 1119
FauNDI CATATG 1 cut(s) 851
Fnu4HI GCNGC 9 cut(s) 159, 184, 273, 653, 667, 670, 862, 917, 1100
FokI GGATG 1 cut(s) 718
FriOI GRGCYC 1 cut(s) 399
Fsp4HI GCNGC 9 cut(s) 159, 184, 273, 653, 667, 670, 862, 917, 1100
FspBI CTAG 1 cut(s) 125
GlaI GCGC 1 cut(s) 147
GluI GCNGC 9 cut(s) 159, 184, 273, 653, 667, 670, 862, 917, 1100
GsaI CCCAGC 1 cut(s) 1083
GsuI CTGGAG 2 cut(s) 96, 483
HapII CCGG 3 cut(s) 350, 759, 909
HgaI GACGC 1 cut(s) 146
HhaI GCGC 1 cut(s) 148
Hin1II CATG 6 cut(s) 103, 523, 556, 942, 1001, 1123
Hin6I GCGC 1 cut(s) 146
HinP1I GCGC 1 cut(s) 146
HinfI GANTC 6 cut(s) 71, 151, 418, 739, 837, 994
HpaII CCGG 3 cut(s) 350, 759, 909
Hpy188I TCNGA 1 cut(s) 1005
Hpy188III TCNNGA 4 cut(s) 75, 462, 497, 1105
HpyAV CCTTC 5 cut(s) 105, 377, 691, 890, 1058
HpyCH4III ACNGT 3 cut(s) 200, 681, 1017
HpyCH4V TGCA 9 cut(s) 432, 556, 655, 707, 864, 919, 1048, 1061, 1123
HpyF10VI GCNNNNNNNGC 9 cut(s) 88, 269, 281, 350, 779, 861, 913, 1045, 1108
HpyF3I CTNAG 8 cut(s) 83, 179, 207, 280, 290, 359, 1094, 1112
Hsp92II CATG 6 cut(s) 103, 523, 556, 942, 1001, 1123
HspAI GCGC 1 cut(s) 146
Kzo9I GATC 3 cut(s) 4, 540, 806
LmnI GCTCC 3 cut(s) 120, 394, 464
Lsp1109I GCAGC 9 cut(s) 145, 195, 259, 639, 656, 678, 848, 903, 1086
LweI GCATC 2 cut(s) 559, 1048
MaeI CTAG 1 cut(s) 125
MaeIII GTNAC 2 cut(s) 127, 173
MalI GATC 3 cut(s) 6, 542, 808
MbiI CCGCTC 1 cut(s) 745
MboI GATC 3 cut(s) 4, 540, 806
MboII GAAGA 4 cut(s) 12, 621, 720, 812
MfeI CAATTG 2 cut(s) 450, 774
MhlI GDGCHC 2 cut(s) 399, 828
MluCI AATT 5 cut(s) 450, 486, 774, 965, 1053
MlyI GAGTC 1 cut(s) 1003
MspA1I CMGCKG 1 cut(s) 669
MspI CCGG 3 cut(s) 350, 759, 909
MspR9I CCNGG 3 cut(s) 909, 910, 1021
MunI CAATTG 2 cut(s) 450, 774
MvaI CCWGG 1 cut(s) 1021
MvnI CGCG 1 cut(s) 1106
MwoI GCNNNNNNNGC 9 cut(s) 88, 269, 281, 350, 779, 861, 913, 1045, 1108
NciI CCSGG 2 cut(s) 909, 910
NcoI CCATGG 1 cut(s) 99
NdeI CATATG 1 cut(s) 851
NdeII GATC 3 cut(s) 4, 540, 806
NlaIII CATG 6 cut(s) 103, 523, 556, 942, 1001, 1123
NlaIV GGNNCC 1 cut(s) 466
NmuCI GTSAC 1 cut(s) 127
NruI TCGCGA 1 cut(s) 1106
NspI RCATGY 1 cut(s) 556
PaeI GCATGC 1 cut(s) 556
PaeR7I CTCGAG 1 cut(s) 991
PfeI GAWTC 5 cut(s) 71, 151, 418, 739, 837
PfoI TCCNGGA 1 cut(s) 1019
PkrI GCNGC 9 cut(s) 160, 185, 274, 654, 668, 671, 863, 918, 1101
PleI GAGTC 1 cut(s) 1002
PpsI GAGTC 1 cut(s) 1002
Psp124BI GAGCTC 1 cut(s) 399
Psp6I CCWGG 1 cut(s) 1019
PspEI GGTNACC 1 cut(s) 173
PspFI CCCAGC 1 cut(s) 1079
PspGI CCWGG 1 cut(s) 1019
PspN4I GGNNCC 1 cut(s) 466
PspPI GGNCC 1 cut(s) 1001
PspXI VCTCGAGB 1 cut(s) 991
PstI CTGCAG 2 cut(s) 866, 921
PstNI CAGNNNCTG 1 cut(s) 74
PvuII CAGCTG 1 cut(s) 669
RruI TCGCGA 1 cut(s) 1106
RsaI GTAC 2 cut(s) 11, 1087
RsaNI GTAC 2 cut(s) 10, 1086
SacI GAGCTC 1 cut(s) 399
SatI GCNGC 9 cut(s) 159, 184, 273, 653, 667, 670, 862, 917, 1100
Sau3AI GATC 3 cut(s) 4, 540, 806
Sau96I GGNCC 1 cut(s) 1001
SchI GAGTC 1 cut(s) 1003
ScrFI CCNGG 3 cut(s) 909, 910, 1021
SduI GDGCHC 2 cut(s) 399, 828
SfaNI GCATC 2 cut(s) 559, 1048
SfcI CTRYAG 2 cut(s) 862, 917
Sfr274I CTCGAG 1 cut(s) 991
SinI GGWCC 1 cut(s) 1001
SlaI CTCGAG 1 cut(s) 991
SmaI CCCGGG 1 cut(s) 910
SmlI CTYRAG 2 cut(s) 746, 991
SmoI CTYRAG 2 cut(s) 746, 991
SphI GCATGC 1 cut(s) 556
Sse9I AATT 5 cut(s) 450, 486, 774, 965, 1053
SsiI CCGC 3 cut(s) 353, 664, 743
SspMI CTAG 1 cut(s) 125
SstI GAGCTC 1 cut(s) 399
StyD4I CCNGG 3 cut(s) 907, 908, 1019
StyI CCWWGG 1 cut(s) 99
TaaI ACNGT 3 cut(s) 200, 681, 1017
TaqI TCGA 2 cut(s) 496, 992
TasI AATT 5 cut(s) 450, 486, 774, 965, 1053
TatI WGTACW 2 cut(s) 9, 1085
TfiI GAWTC 5 cut(s) 71, 151, 418, 739, 837
TscAI CASTG 2 cut(s) 837, 1098
TseFI GTSAC 1 cut(s) 127
TseI GCWGC 9 cut(s) 158, 183, 272, 652, 666, 669, 861, 916, 1099
Tsp45I GTSAC 1 cut(s) 127
TspDTI ATGAA 4 cut(s) 233, 536, 720, 838
TspGWI ACGGA 1 cut(s) 891
TspMI CCCGGG 1 cut(s) 908
TspRI CASTG 2 cut(s) 837, 1098
VpaK11BI GGWCC 1 cut(s) 1001
XagI CCTNNNNNAGG 1 cut(s) 800
XapI RAATTY 1 cut(s) 486
XceI RCATGY 1 cut(s) 556
XhoI CTCGAG 1 cut(s) 991
XmaI CCCGGG 1 cut(s) 908
XspI CTAG 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.