Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010104

Physical Location & Seq

Genomic Coordinates Reverse (-)

5504242 .. 5509361

Gene Structure 5120 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G16750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2631 bp

ATGGCTCCTCATTCGTTAAAGAAGAACTACAGGTGCTCACGATCTCTAAAGCAGTTCTACGGCGGTGGTCCTTTCATTGTTTCATCTGATGGTTCTTTCATCGCCTGCGCCTGTGGTGACGTCATTAACATCGTTGATTCTACGGATTCATCAGTGAAATCCACGATTGAAGGCGAGTCGGATACGCTCACTGCTTTAGCTCTTAGTCCTGATGATAAGCTCCTTTTCTCTGCTGGACATAGTAGACAAATCCGAGTTTGGGATTTGGAAACCTTGAAATGCATTCGCTCTTGGAAGGGACACGAAGGACCTGTGATGGGAATGGCTTGCCACGCATCTGGAGGATTGCTAGCTACTGCTGGAGCTGATAGGAAAGTTCTTGTTTGGGATGTTGATGGTGGTTTCTGCACTCATTATTTCAGAGGCCATAAAGGGGTTGTGTCAAGTATCCTCTTCCATCCTGATTCAAACAAAAACATTCTTATCTCGGGAAGTGATGATGCAACCGTTCGTGTCTGGGATCTTAATGCAAAGAATACTGAGAAGAAATGTCTTGCCATTATGGAGAAGCACTTTTCAGCTGTGACTTCAATTGCTCTATCAGAGGATGGATTGACTTTATTCAGTGCTGGAAGAGATAAAGTTGTGAACTTGTGGGACCTTCATGATTATAGCTGCAAGGCTACAGTTGCAACGTATGAGGTACTAGAAGCTGTGACAACAGTTTCTTCTGGGACGCCTTTCGCTTCATTTGTAGCTTCTTTGGATCAGAAGAAGAGTAAGAAGAAGGAATCTGATTCTCAAGCAACATATTTTATTACTGTTGGTGAACGTGGTGTTGTGCGCATCTGGAAGTCTGAAGGTTCAATTTGCCTCTATGAGCAAAAGTCGTCGGATATTACTGTCAGCTCGGATGATGAGGAATCTAAAAGAGGATTCACTGCAGCTGCTATGCTGCCTTCTGATCACGGACTGCTTTGTGTGACTGCTGATCAGCAGTTCTTTTTCTACTCCGTTGTGGAAAATGTGGAAGAAACAGAGTTAGTGCTAAGCAAGAGGCTGGTTGGATATAATGAAGAAATAGCTGATATGAAGTTCCTAGGTGATGAAGAACAGTTTCTCGCAGTAGCTACAAATCTCGAGGAGGTTCGTGTATATGATGTTGCAACAATGTCATGTTCCTACGTGTTAGCTGGCCATAAGGAAGTTGTTCTGTCCCTCGACACTTGCGTATCTAGTTCTGGGAATGTTCTAATCGTAACTGGAAGTAAAGACAAAACTGTAAGGCTATGGAACGCAACAAGCAAATCTTGTATCGGAGTTGGTACTGGCCATAATGGCGATATCTTAGCGGTTGCTTTTGCGAAGAAGTCCTTCAGTTTCTTTGTCAGTGGAAGTGGTGATCGTACACTGAAGGTCTGGAGCCTTGATGGTATTTCAGAGGACTCAGAGGAGCCCATTAATCTGAAAACTAGAAGTGTTGTCGCTGCCCATGATAAAGACATCAATTCCGTGGCTGTTGCTCGTAACGATAGCTTAGTTTGCACTGGTTCTGAGGATCGTACAGCTAGCATATGGAGACTACCAGACTTGGTACATGTTGTTACACTTAAAGGACACAAGAGGCGGATTTTTTCTGTTGAGTTCTCAACTGTTGATCAGTGCGTAATGACAGCTTCAGGAGATAAGACAGTAAAGATATGGGCTATATCTGATGGTTCCTGCCTCAAAACATTTGAAGGTCATACCTCAAGTGTACTTAGGGCCTCATTTATAACTGATGGAACCCAATTTGTCTCATGTGGTGCCGATGGTTTGTTGAAACTTTGGAATGTGAACACTAGCGAGTGCATTGCCACATATGACCAGCACGAGGACAAGGTATGGGCTTTAGCTGTTGGAAAGAAGACAGAAATGATTGCAACTGGTGGAGGTGATGCAGTTATTAATTTATGGCATGATTCAACCGCTTCAGATAAAGAAGACGATTTCCGAAAAGAGGAAGAAGCAATCTTGAGAGGTCAAGAGCTGGAAAACGCAGTGTTAGATGCGGAATACACTAAAGCTATAAGATTAGCATTTGAGCTTTGTAGGCCTCACAAAGTTTTTGAGCTCTTCAGTGGTCTCTGCAGGAAAAGAGATTCAGACGAACAGATAGTGAAAGCTCTTCAAGGACTTGAAAAAGAAGAGTTCCGTCTACTTTTTGAATATGTCCGAGAATGGAACACAAAACCAAAGCTATGCCACATTGCTCAGTTTGTTCTTTACAAAACCTTCAACATACTTCCTCCCACAGAAATTGTTCAGGTAAAAGGAATTGGGGAACTCCTGGAAGGGTTAATCCCATATAGTCAGAGACATTTCAGTAGAATTGACAGATTTGTAAGAAGCAGTTTCTTGTTAGACTACACACTTGGTGAGATGTCTGTGATCGATCCAGAGACTGTTGAGACAGAGTATCCTAAGGACGAGAAGAAAAAAGAAAAAGATGTCATTGCTGCAATGGAACAAGACACAGACGAGCTAAAGCAGGAGACTCCTTCGAGGAAACGAAAGTCTCAGAAATCCAAAGGTAAATCGAATAAGAAGAGACTCATTGCCGAAGCACAGGGAAGCGTAATTGCAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000462 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031974 GO:0031981 GO:0032040 GO:0032991 GO:0034388 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Utp13 WD40

Protein Analysis

876

Amino Acids

96.7

Weight (kDa)

5.67

Isoelectric Point (pI)

40.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WD40_WDHD1_1st	PF24817	27 - 100	3e-08	WDHD1 first WD40 domain
Beta-prop_WDR5	PF25175	28 - 156	9.1e-23	WDR5 beta-propeller domain
Beta-prop_THOC3	PF25174	28 - 176	3.7e-23	THOC3 beta-propeller domain
WD40_Gbeta	PF25391	29 - 221	1.2e-19	G protein beta WD-40 repeat protein
Beta-prop_WDR3_1st	PF25173	33 - 221	1.1e-34	WDR3 first beta-propeller domain
Beta-prop_DCAF4	PF23761	36 - 131	1.1e-06	DDB1- and CUL4-associated factor 4 beta-propeller domain
WD40_Prp19	PF24814	39 - 234	4.2e-34	Prp19 WD40 domain
Beta-prop_TEP1_2nd	PF25047	48 - 285	3.6e-18	TEP-1 second beta-propeller
EIF3I	PF24805	56 - 143	2.8e-07	EIF3I
Beta-prop_WDR3_2nd	PF25172	61 - 220	5.5e-21	WDR3 second beta-propeller domain
Beta-prop_EML_2	PF23414	63 - 224	1.2e-15	Echinoderm microtubule-associated protein second beta-propeller
WD40_MABP1-WDR62_2nd	PF24782	63 - 175	3.3e-12	MABP1/WDR62 second WD40 domain
WD40	PF00400	93 - 130	1.8e-07	WD domain, G-beta repeat
WD40_WDHD1_1st	PF24817	103 - 188	8.5e-10	WDHD1 first WD40 domain
Beta-prop_WDR36-Utp21_2nd	PF25168	104 - 177	1.2e-08	WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR90_POC16_2nd	PF23393	115 - 228	1.2e-10	WDR90/POC16, second beta-propeller
Beta-prop_WDR36-Utp21_1st	PF25171	126 - 219	2.2e-06	WDR36/Utp21 first beta-propeller
WD40	PF00400	135 - 174	1.5e-08	WD domain, G-beta repeat
Beta-prop_WDR5	PF25175	136 - 234	4.2e-18	WDR5 beta-propeller domain
WDR55	PF24796	146 - 338	5.1e-09	WDR55
WD40_CDC20-Fz	PF24807	157 - 228	1.5e-08	CDC20/Fizzy WD40 domain
Beta-prop_THOC3	PF25174	182 - 242	5.5e-07	THOC3 beta-propeller domain
WD40	PF00400	183 - 220	4.6e-06	WD domain, G-beta repeat
WD40_MABP1-WDR62_2nd	PF24782	267 - 611	9.4e-17	MABP1/WDR62 second WD40 domain
WD40_WDHD1_1st	PF24817	267 - 439	2e-08	WDHD1 first WD40 domain
Beta-prop_EML_2	PF23414	269 - 410	2.8e-06	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR3_2nd	PF25172	272 - 527	6.3e-22	WDR3 second beta-propeller domain
WD40_CDC20-Fz	PF24807	289 - 568	4e-22	CDC20/Fizzy WD40 domain
Beta-prop_WDR5	PF25175	310 - 476	1.2e-19	WDR5 beta-propeller domain
WD40_Gbeta	PF25391	316 - 476	3.3e-09	G protein beta WD-40 repeat protein
WDR55	PF24796	327 - 527	2.2e-06	WDR55
Beta-prop_THOC3	PF25174	342 - 578	2.6e-30	THOC3 beta-propeller domain
Beta-prop_TEP1_2nd	PF25047	346 - 481	8.3e-08	TEP-1 second beta-propeller
Beta-prop_WDR3_1st	PF25173	354 - 477	4.1e-18	WDR3 first beta-propeller domain
Beta-prop_EML	PF23409	381 - 485	8.8e-07	Echinoderm microtubule-associated protein first beta-propeller
WD40	PF00400	392 - 432	1e-06	WD domain, G-beta repeat
WD40_WDHD1_1st	PF24817	410 - 480	6.6e-08	WDHD1 first WD40 domain
WD40_Prp19	PF24814	412 - 507	1.2e-10	Prp19 WD40 domain
WD40_Gbeta	PF25391	419 - 528	2.6e-10	G protein beta WD-40 repeat protein
Beta-prop_WDR36-Utp21_2nd	PF25168	440 - 579	3.7e-07	WDR36/Utp21 second beta-propeller domain
Beta-prop_EML_2	PF23414	457 - 630	1.7e-14	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_TEP1_2nd	PF25047	458 - 653	1.2e-14	TEP-1 second beta-propeller
Beta-prop_WDR3_2nd	PF25172	462 - 655	5.2e-32	WDR3 second beta-propeller domain
Beta-prop_EML	PF23409	488 - 667	1e-12	Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_CAF1B_HIR1	PF24105	489 - 578	3.1e-06	CAF1B/HIR1 beta-propeller domain
WD40_MABP1-WDR62_1st	PF24780	490 - 616	9.5e-06	MABP1/WDR62 first WD40 domain
Beta-prop_SCAP	PF24017	490 - 561	8.2e-06	SCAP Beta-propeller
WD40_Prp19	PF24814	492 - 652	1.7e-24	Prp19 WD40 domain
WD40_WDHD1_1st	PF24817	492 - 583	2.1e-12	WDHD1 first WD40 domain
Beta-prop_WDR3_1st	PF25173	493 - 653	3.5e-33	WDR3 first beta-propeller domain
EIF3I	PF24805	495 - 583	6.9e-11	EIF3I
Beta-prop_WDR36-Utp21_2nd	PF25168	496 - 657	1.5e-10	WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR5	PF25175	496 - 657	1.2e-34	WDR5 beta-propeller domain
Beta-prop_WDR36-Utp21_1st	PF25171	514 - 652	3.9e-08	WDR36/Utp21 first beta-propeller
WDR55	PF24796	533 - 652	1.7e-12	WDR55
WD40_Gbeta	PF25391	537 - 653	5.6e-15	G protein beta WD-40 repeat protein
WD40_MABP1-WDR62_2nd	PF24782	544 - 653	4.4e-07	MABP1/WDR62 second WD40 domain
Beta-prop_WDR90_POC16_2nd	PF23393	554 - 682	3.8e-06	WDR90/POC16, second beta-propeller
Beta-prop_THOC3	PF25174	555 - 657	3.3e-18	THOC3 beta-propeller domain
Beta-prop_SCAP	PF24017	556 - 657	7.5e-09	SCAP Beta-propeller
WD40	PF00400	573 - 611	2.7e-08	WD domain, G-beta repeat
WD40_CDC20-Fz	PF24807	575 - 656	3.4e-09	CDC20/Fizzy WD40 domain
EIF3I	PF24805	579 - 656	7.7e-09	EIF3I
Utp13	PF08625	675 - 808	1.7e-41	Utp13 specific WD40 associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

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Orthologous Genes (Group: OG0010104)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16750
fragaria_vesca	FvH4_7g34000 FvH4_7g34000
malus_domestica	MD01G1236400.v1.1 MD07G1309100.v1.1
prunus_persica	Prupe.2G326400_v2.0.a1 Prupe.2G326400_v2.0.a1
pyrus_communis	pycom01g24430 pycom07g28110
rosa_chinensis	RchiOBHm_Chr1g0384251
rosa_laevigata	RLG00000026054
rosa_multiflora	Rmu_sc0011271.1_g000002
rosa_roxburghii	Rroxscaffold_4G00276810
rosa_rugosa	Rorug01G0446100 Rorug01G0446200 Rorug01G0446200
rosa_samantha	Rh1AG471700 Rh1BG429400 Rh1CG442000 Rh1DG462100
rosa_wichuraiana	Rw1G040090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1775
AatII	GACGTC	1 cut(s)	123
Acc16I	TGCGCA	1 cut(s)	845
AccB1I	GGYRCC	1 cut(s)	1805
AccI	GTMKAC	2 cut(s)	244, 2197
AciI	CCGC	5 cut(s)	63, 1352, 1627, 1968, 2051
AclWI	GGATC	4 cut(s)	528, 774, 1566, 2429
AcoI	YGGCCR	2 cut(s)	1195, 1330
AcuI	CTGAAG	6 cut(s)	879, 1360, 1433, 1662, 1956, 2101
AcyI	GRCGYC	2 cut(s)	120, 737
AdeI	CACNNNGTG	1 cut(s)	2417
AfaI	GTAC	6 cut(s)	705, 1327, 1408, 1564, 1596, 1758
AfiI	CCNNNNNNNGG	5 cut(s)	259, 317, 433, 1873, 1999
AflIII	ACRYGT	2 cut(s)	1185, 1597
AjnI	CCWGG	1 cut(s)	2328
Alw21I	GWGCWC	2 cut(s)	38, 2115
Alw26I	GTCTC	9 cut(s)	1573, 1801, 2129, 2350, 2435, 2444, 2528, 2562, 2584
AlwI	GGATC	4 cut(s)	528, 774, 1566, 2429
AlwNI	CAGNNNCTG	1 cut(s)	2444
Ama87I	CYCGRG	2 cut(s)	487, 1139
AoxI	GGCC	5 cut(s)	424, 1195, 1330, 1764, 2093
ApeKI	GCWGC	6 cut(s)	675, 944, 947, 955, 1487, 2498
AseI	ATTAAT	2 cut(s)	1461, 1947
Asp700I	GAANNNNTTC	4 cut(s)	1116, 1209, 1373, 2301
AspA2I	CCTAGG	1 cut(s)	1099
AspLEI	GCGC	2 cut(s)	110, 846
AspS9I	GGNCC	4 cut(s)	68, 308, 658, 1764
AsuHPI	GGTGA	6 cut(s)	128, 839, 1115, 1412, 1946, 2429
AsuNHI	GCTAGC	2 cut(s)	349, 1568
AvaI	CYCGRG	2 cut(s)	487, 1139
AvaII	GGWCC	3 cut(s)	68, 308, 658
AvrII	CCTAGG	1 cut(s)	1099
AxyI	CCTNAGG	1 cut(s)	2463
BaeI	ACNNNNGTAYC	2 cut(s)	1215, 1248
BalI	TGGCCA	2 cut(s)	1197, 1332
BanI	GGYRCC	1 cut(s)	1805
BanII	GRGCYC	2 cut(s)	1458, 2115
BauI	CACGAG	1 cut(s)	1871
BbsI	GAAGAC	2 cut(s)	1913, 1989
Bbv12I	GWGCWC	2 cut(s)	38, 2115
BbvI	GCAGC	6 cut(s)	662, 934, 942, 956, 1474, 2485
BccI	CCATC	9 cut(s)	83, 310, 389, 465, 602, 1424, 1709, 1775, 1805
BceAI	ACGGC	1 cut(s)	76
BcgI	CGANNNNNNTGC	2 cut(s)	1835, 1869
BciT130I	CCWGG	1 cut(s)	2330
BciVI	GTATCC	3 cut(s)	175, 458, 2469
BclI	TGATCA	3 cut(s)	964, 991, 1657
BcoDI	GTCTC	9 cut(s)	1573, 1801, 2129, 2350, 2435, 2444, 2528, 2562, 2584
BfaI	CTAG	7 cut(s)	350, 707, 1100, 1236, 1473, 1569, 1842
BfmI	CTRYAG	4 cut(s)	28, 684, 942, 2128
BfuI	GTATCC	3 cut(s)	175, 458, 2469
BglI	GCCNNNNNGGC	1 cut(s)	1338
BisI	GCNGC	6 cut(s)	676, 945, 948, 956, 1488, 2499
BlnI	CCTAGG	1 cut(s)	1099
BlpI	GCTNAGC	1 cut(s)	1049
BlsI	GCNGC	6 cut(s)	677, 946, 949, 957, 1489, 2500
Bme1390I	CCNGG	1 cut(s)	2330
Bme18I	GGWCC	3 cut(s)	68, 308, 658
BmeT110I	CYCGRG	2 cut(s)	487, 1139
BmgT120I	GGNCC	4 cut(s)	68, 308, 658, 1764
BmiI	GGNNCC	7 cut(s)	6, 659, 1424, 1455, 1720, 1786, 1807
BmrFI	CCNGG	1 cut(s)	2330
BmsI	GCATC	5 cut(s)	344, 490, 855, 1927, 2038
BmtI	GCTAGC	2 cut(s)	353, 1572
BpiI	GAAGAC	2 cut(s)	1913, 1989
BpmI	CTGGAG	3 cut(s)	360, 381, 1441
Bpu1102I	GCTNAGC	1 cut(s)	1049
BpuEI	CTTGAG	3 cut(s)	786, 1735, 2035
Bsa29I	ATCGAT	1 cut(s)	2433
BsaAI	YACGTR	1 cut(s)	1186
BsaHI	GRCGYC	2 cut(s)	120, 737
BsaI	GGTCTC	1 cut(s)	2129
BsaJI	CCNNGG	2 cut(s)	1099, 1512
Bsc4I	CCNNNNNNNGG	5 cut(s)	259, 317, 433, 1873, 1999
Bse1I	ACTGG	4 cut(s)	1267, 1333, 1552, 1930
Bse21I	CCTNAGG	1 cut(s)	2463
Bse3DI	GCAATG	5 cut(s)	1851, 2247, 2493, 2508, 2595
BseBI	CCWGG	1 cut(s)	2330
BseCI	ATCGAT	1 cut(s)	2433
BseDI	CCNNGG	2 cut(s)	1099, 1512
BseGI	GGATG	4 cut(s)	394, 457, 613, 919
BseLI	CCNNNNNNNGG	5 cut(s)	259, 317, 433, 1873, 1999
BseMI	GCAATG	5 cut(s)	1851, 2247, 2493, 2508, 2595
BseMII	CTCAG	5 cut(s)	531, 1461, 1545, 2267, 2573
BseNI	ACTGG	4 cut(s)	1267, 1333, 1552, 1930
BseRI	GAGGAG	2 cut(s)	1157, 1466
BseXI	GCAGC	6 cut(s)	662, 934, 942, 956, 1474, 2485
BsgI	GTGCAG	1 cut(s)	391
BshFI	GGCC	5 cut(s)	426, 1197, 1332, 1766, 2095
BshNI	GGYRCC	1 cut(s)	1805
BshVI	ATCGAT	1 cut(s)	2433
BsiHKAI	GWGCWC	2 cut(s)	38, 2115
BsiHKCI	CYCGRG	2 cut(s)	487, 1139
BslFI	GGGAC	4 cut(s)	312, 671, 748, 1201
BslI	CCNNNNNNNGG	5 cut(s)	259, 317, 433, 1873, 1999
BsmAI	GTCTC	9 cut(s)	1573, 1801, 2129, 2350, 2435, 2444, 2528, 2562, 2584
BsmFI	GGGAC	4 cut(s)	312, 671, 748, 1201
BsmI	GAATGC	1 cut(s)	282
BsnI	GGCC	5 cut(s)	426, 1197, 1332, 1766, 2095
Bso31I	GGTCTC	1 cut(s)	2129
BsoBI	CYCGRG	2 cut(s)	487, 1139
Bsp1286I	GDGCHC	3 cut(s)	38, 1458, 2115
Bsp1720I	GCTNAGC	1 cut(s)	1049
BspACI	CCGC	5 cut(s)	63, 1352, 1627, 1968, 2051
BspANI	GGCC	5 cut(s)	426, 1197, 1332, 1766, 2095
BspCNI	CTCAG	5 cut(s)	532, 1460, 1546, 2266, 2572
BspDI	ATCGAT	1 cut(s)	2433
BspHI	TCATGA	1 cut(s)	664
BspLI	GGNNCC	7 cut(s)	6, 659, 1424, 1455, 1720, 1786, 1807
BspMAI	CTGCAG	2 cut(s)	946, 2132
BspOI	GCTAGC	2 cut(s)	353, 1572
BspPI	GGATC	4 cut(s)	528, 774, 1566, 2429
BspQI	GCTCTTC	2 cut(s)	2120, 2172
BspT107I	GGYRCC	1 cut(s)	1805
BspTNI	GGTCTC	1 cut(s)	2129
BsrDI	GCAATG	5 cut(s)	1851, 2247, 2493, 2508, 2595
BsrI	ACTGG	4 cut(s)	1267, 1333, 1552, 1930
BssECI	CCNNGG	2 cut(s)	1099, 1512
BssNI	GRCGYC	2 cut(s)	120, 737
BssSI	CACGAG	1 cut(s)	1871
BssT1I	CCWWGG	1 cut(s)	1099
Bst2BI	CACGAG	1 cut(s)	1871
Bst2UI	CCWGG	1 cut(s)	2330
Bst6I	CTCTTC	7 cut(s)	458, 628, 770, 2120, 2172, 2181, 2582
BstACI	GRCGYC	2 cut(s)	120, 737
BstBAI	YACGTR	1 cut(s)	1186
BstC8I	GCNNGC	5 cut(s)	106, 328, 351, 1195, 1570
BstDSI	CCRYGG	1 cut(s)	1512
BstF5I	GGATG	4 cut(s)	394, 457, 613, 919
BstHHI	GCGC	2 cut(s)	110, 846
BstMAI	GTCTC	9 cut(s)	1573, 1801, 2129, 2350, 2435, 2444, 2528, 2562, 2584
BstMWI	GCNNNNNNNGC	5 cut(s)	332, 689, 1338, 1542, 2092
BstNI	CCWGG	1 cut(s)	2330
BstNSI	RCATGY	1 cut(s)	1601
BstSCI	CCNGG	1 cut(s)	2328
BstSFI	CTRYAG	4 cut(s)	28, 684, 942, 2128
BstV1I	GCAGC	6 cut(s)	662, 934, 942, 956, 1474, 2485
BstV2I	GAAGAC	2 cut(s)	1913, 1989
BstX2I	RGATCY	1 cut(s)	520
BstXI	CCANNNNNNTGG	1 cut(s)	338
BstYI	RGATCY	1 cut(s)	520
Bsu15I	ATCGAT	1 cut(s)	2433
Bsu36I	CCTNAGG	1 cut(s)	2463
BsuI	GTATCC	3 cut(s)	175, 458, 2469
BsuRI	GGCC	5 cut(s)	426, 1197, 1332, 1766, 2095
BsuTUI	ATCGAT	1 cut(s)	2433
BtgI	CCRYGG	1 cut(s)	1512
BtgZI	GCGATG	1 cut(s)	85
BtsCI	GGATG	4 cut(s)	394, 457, 613, 919
BtsI	GCAGTG	3 cut(s)	189, 939, 2046
Cac8I	GCNNGC	5 cut(s)	106, 328, 351, 1195, 1570
CaiI	CAGNNNCTG	1 cut(s)	2444
CciI	TCATGA	1 cut(s)	664
CfoI	GCGC	2 cut(s)	110, 846
Cfr13I	GGNCC	4 cut(s)	68, 308, 658, 1764
ClaI	ATCGAT	1 cut(s)	2433
CseI	GACGC	1 cut(s)	745
Csp6I	GTAC	6 cut(s)	704, 1326, 1407, 1563, 1595, 1757
CspCI	CAANNNNNGTGG	2 cut(s)	2281, 2316
CviAII	CATG	6 cut(s)	665, 1176, 1493, 1598, 1800, 1958
CviQI	GTAC	6 cut(s)	704, 1326, 1407, 1563, 1595, 1757
DraIII	CACNNNGTG	1 cut(s)	2417
EaeI	YGGCCR	2 cut(s)	1195, 1330
Eam1104I	CTCTTC	7 cut(s)	458, 628, 770, 2120, 2172, 2181, 2582
EarI	CTCTTC	7 cut(s)	458, 628, 770, 2120, 2172, 2181, 2582
EciI	GGCGGA	1 cut(s)	1642
Ecl136II	GAGCTC	1 cut(s)	2113
Eco130I	CCWWGG	1 cut(s)	1099
Eco147I	AGGCCT	1 cut(s)	2095
Eco24I	GRGCYC	2 cut(s)	1458, 2115
Eco31I	GGTCTC	1 cut(s)	2129
Eco32I	GATATC	1 cut(s)	1345
Eco47I	GGWCC	3 cut(s)	68, 308, 658
Eco53kI	GAGCTC	1 cut(s)	2113
Eco57I	CTGAAG	6 cut(s)	879, 1360, 1433, 1662, 1956, 2101
Eco81I	CCTNAGG	1 cut(s)	2463
Eco88I	CYCGRG	2 cut(s)	487, 1139
EcoICRI	GAGCTC	1 cut(s)	2113
EcoO109I	RGGNCCY	3 cut(s)	308, 658, 1764
EcoRII	CCWGG	1 cut(s)	2328
EcoRV	GATATC	1 cut(s)	1345
EcoT14I	CCWWGG	1 cut(s)	1099
EcoT22I	ATGCAT	1 cut(s)	284
EcoT38I	GRGCYC	2 cut(s)	1458, 2115
ErhI	CCWWGG	1 cut(s)	1099
FaeI	CATG	6 cut(s)	668, 1179, 1496, 1601, 1803, 1961
FalI	AAGNNNNNCTT	4 cut(s)	1294, 1326, 1358, 1390
FaqI	GGGAC	4 cut(s)	312, 671, 748, 1201
FatI	CATG	6 cut(s)	664, 1175, 1492, 1597, 1799, 1957
FauNDI	CATATG	2 cut(s)	1574, 1861
FbaI	TGATCA	3 cut(s)	964, 991, 1657
FblI	GTMKAC	2 cut(s)	244, 2197
Fnu4HI	GCNGC	6 cut(s)	676, 945, 948, 956, 1488, 2499
FokI	GGATG	4 cut(s)	401, 444, 620, 926
FriOI	GRGCYC	2 cut(s)	1458, 2115
Fsp4HI	GCNGC	6 cut(s)	676, 945, 948, 956, 1488, 2499
FspAI	RTGCGCAY	1 cut(s)	845
FspBI	CTAG	7 cut(s)	350, 707, 1100, 1236, 1473, 1569, 1842
FspI	TGCGCA	1 cut(s)	845
GlaI	GCGC	2 cut(s)	109, 845
GluI	GCNGC	6 cut(s)	676, 945, 948, 956, 1488, 2499
GsuI	CTGGAG	3 cut(s)	360, 381, 1441
HaeIII	GGCC	5 cut(s)	426, 1197, 1332, 1766, 2095
HgaI	GACGC	1 cut(s)	745
HhaI	GCGC	2 cut(s)	110, 846
Hin1I	GRCGYC	2 cut(s)	120, 737
Hin1II	CATG	6 cut(s)	668, 1179, 1496, 1601, 1803, 1961
Hin6I	GCGC	2 cut(s)	108, 844
HinP1I	GCGC	2 cut(s)	108, 844
HphI	GGTGA	6 cut(s)	128, 839, 1115, 1412, 1946, 2429
Hpy166II	GTNNAC	7 cut(s)	245, 649, 830, 1409, 1757, 1837, 2198
Hpy8I	GTNNAC	7 cut(s)	245, 649, 830, 1409, 1757, 1837, 2198
Hpy99I	CGWCG	1 cut(s)	895
HpyCH4IV	ACGT	4 cut(s)	120, 695, 832, 1185
HpyF10VI	GCNNNNNNNGC	5 cut(s)	332, 689, 1338, 1542, 2092
HpySE526I	ACGT	4 cut(s)	120, 695, 832, 1185
Hsp92I	GRCGYC	2 cut(s)	120, 737
Hsp92II	CATG	6 cut(s)	668, 1179, 1496, 1601, 1803, 1961
HspAI	GCGC	2 cut(s)	108, 844
Ksp22I	TGATCA	3 cut(s)	964, 991, 1657
LguI	GCTCTTC	2 cut(s)	2120, 2172
LmnI	GCTCC	5 cut(s)	10, 225, 362, 1422, 1453
Lsp1109I	GCAGC	6 cut(s)	662, 934, 942, 956, 1474, 2485
LweI	GCATC	5 cut(s)	344, 490, 855, 1927, 2038
MaeI	CTAG	7 cut(s)	350, 707, 1100, 1236, 1473, 1569, 1842
MaeII	ACGT	4 cut(s)	120, 695, 832, 1185
MaeIII	GTNAC	7 cut(s)	116, 583, 715, 982, 1258, 1526, 1603
MfeI	CAATTG	1 cut(s)	591
MflI	RGATCY	1 cut(s)	520
MhlI	GDGCHC	3 cut(s)	38, 1458, 2115
MlsI	TGGCCA	2 cut(s)	1197, 1332
MluCI	AATT	9 cut(s)	591, 867, 1507, 1790, 1948, 2298, 2316, 2370, 2619
MluNI	TGGCCA	2 cut(s)	1197, 1332
MlyI	GAGTC	4 cut(s)	185, 1439, 2530, 2586
MmeI	TCCRAC	4 cut(s)	159, 873, 1045, 1879
Mox20I	TGGCCA	2 cut(s)	1197, 1332
Mph1103I	ATGCAT	1 cut(s)	284
MroXI	GAANNNNTTC	4 cut(s)	1116, 1209, 1373, 2301
MscI	TGGCCA	2 cut(s)	1197, 1332
MseI	TTAA	7 cut(s)	17, 126, 525, 1461, 1611, 1947, 2339
Msp20I	TGGCCA	2 cut(s)	1197, 1332
MspA1I	CMGCKG	2 cut(s)	581, 947
MspR9I	CCNGG	1 cut(s)	2330
MunI	CAATTG	1 cut(s)	591
Mva1269I	GAATGC	1 cut(s)	282
MvaI	CCWGG	1 cut(s)	2330
MwoI	GCNNNNNNNGC	5 cut(s)	332, 689, 1338, 1542, 2092
NdeI	CATATG	2 cut(s)	1574, 1861
NheI	GCTAGC	2 cut(s)	349, 1568
NlaIII	CATG	6 cut(s)	668, 1179, 1496, 1601, 1803, 1961
NlaIV	GGNNCC	7 cut(s)	6, 659, 1424, 1455, 1720, 1786, 1807
NmuCI	GTSAC	4 cut(s)	116, 583, 715, 982
NsbI	TGCGCA	1 cut(s)	845
NsiI	ATGCAT	1 cut(s)	284
NspI	RCATGY	1 cut(s)	1601
PaeR7I	CTCGAG	1 cut(s)	1139
PagI	TCATGA	1 cut(s)	664
PceI	AGGCCT	1 cut(s)	2095
PciI	ACATGT	1 cut(s)	1597
PciSI	GCTCTTC	2 cut(s)	2120, 2172
PcsI	WCGNNNNNNNCGW	1 cut(s)	1227
PctI	GAATGC	1 cut(s)	282
PdmI	GAANNNNTTC	4 cut(s)	1116, 1209, 1373, 2301
PfeI	GAWTC	9 cut(s)	137, 146, 464, 791, 797, 923, 936, 1961, 2141
PfoI	TCCNGGA	1 cut(s)	2328
PkrI	GCNGC	6 cut(s)	677, 946, 949, 957, 1489, 2500
PleI	GAGTC	4 cut(s)	184, 1439, 2530, 2586
PpsI	GAGTC	4 cut(s)	184, 1439, 2530, 2586
Ppu21I	YACGTR	1 cut(s)	1186
PpuMI	RGGWCCY	2 cut(s)	308, 658
PscI	ACATGT	1 cut(s)	1597
PshBI	ATTAAT	2 cut(s)	1461, 1947
PsiI	TTATAA	1 cut(s)	1775
Psp124BI	GAGCTC	1 cut(s)	2115
Psp5II	RGGWCCY	2 cut(s)	308, 658
Psp6I	CCWGG	1 cut(s)	2328
PspGI	CCWGG	1 cut(s)	2328
PspN4I	GGNNCC	7 cut(s)	6, 659, 1424, 1455, 1720, 1786, 1807
PspPI	GGNCC	4 cut(s)	68, 308, 658, 1764
PspPPI	RGGWCCY	2 cut(s)	308, 658
PstI	CTGCAG	2 cut(s)	946, 2132
PstNI	CAGNNNCTG	1 cut(s)	2444
PsuI	RGATCY	1 cut(s)	520
PvuII	CAGCTG	2 cut(s)	581, 947
RsaI	GTAC	6 cut(s)	705, 1327, 1408, 1564, 1596, 1758
RsaNI	GTAC	6 cut(s)	704, 1326, 1407, 1563, 1595, 1757
SacI	GAGCTC	1 cut(s)	2115
SapI	GCTCTTC	2 cut(s)	2120, 2172
SaqAI	TTAA	7 cut(s)	17, 126, 525, 1461, 1611, 1947, 2339
SatI	GCNGC	6 cut(s)	676, 945, 948, 956, 1488, 2499
Sau96I	GGNCC	4 cut(s)	68, 308, 658, 1764
SchI	GAGTC	4 cut(s)	185, 1439, 2530, 2586
ScrFI	CCNGG	1 cut(s)	2330
SduI	GDGCHC	3 cut(s)	38, 1458, 2115
SfaNI	GCATC	5 cut(s)	344, 490, 855, 1927, 2038
SfcI	CTRYAG	4 cut(s)	28, 684, 942, 2128
Sfr274I	CTCGAG	1 cut(s)	1139
SinI	GGWCC	3 cut(s)	68, 308, 658
SlaI	CTCGAG	1 cut(s)	1139
SmlI	CTYRAG	4 cut(s)	801, 1139, 1750, 2014
SmoI	CTYRAG	4 cut(s)	801, 1139, 1750, 2014
Sse9I	AATT	9 cut(s)	591, 867, 1507, 1790, 1948, 2298, 2316, 2370, 2619
SseBI	AGGCCT	1 cut(s)	2095
SsiI	CCGC	5 cut(s)	63, 1352, 1627, 1968, 2051
SspMI	CTAG	7 cut(s)	350, 707, 1100, 1236, 1473, 1569, 1842
SstI	GAGCTC	1 cut(s)	2115
StuI	AGGCCT	1 cut(s)	2095
StyD4I	CCNGG	1 cut(s)	2328
StyI	CCWWGG	1 cut(s)	1099
TaiI	ACGT	4 cut(s)	123, 698, 835, 1188
TaqI	TCGA	5 cut(s)	1140, 1221, 2433, 2543, 2579
TasI	AATT	9 cut(s)	591, 867, 1507, 1790, 1948, 2298, 2316, 2370, 2619
TatI	WGTACW	1 cut(s)	1756
TfiI	GAWTC	9 cut(s)	137, 146, 464, 791, 797, 923, 936, 1961, 2141
Tru1I	TTAA	7 cut(s)	17, 126, 525, 1461, 1611, 1947, 2339
Tru9I	TTAA	7 cut(s)	17, 126, 525, 1461, 1611, 1947, 2339
TseFI	GTSAC	4 cut(s)	116, 583, 715, 982
TseI	GCWGC	6 cut(s)	675, 944, 947, 955, 1487, 2498
Tsp45I	GTSAC	4 cut(s)	116, 583, 715, 982
TspDTI	ATGAA	9 cut(s)	64, 72, 88, 138, 653, 738, 1089, 1106, 1122
TspGWI	ACGGA	5 cut(s)	158, 984, 1003, 1501, 2183
VpaK11BI	GGWCC	3 cut(s)	68, 308, 658
VspI	ATTAAT	2 cut(s)	1461, 1947
XceI	RCATGY	1 cut(s)	1601
XhoI	CTCGAG	1 cut(s)	1139
XmaJI	CCTAGG	1 cut(s)	1099
XmiI	GTMKAC	2 cut(s)	244, 2197
XmnI	GAANNNNTTC	4 cut(s)	1116, 1209, 1373, 2301
XspI	CTAG	7 cut(s)	350, 707, 1100, 1236, 1473, 1569, 1842
ZraI	GACGTC	1 cut(s)	121
Zsp2I	ATGCAT	1 cut(s)	284

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.