Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0010104

Physical Location & Seq

Genomic Coordinates Forward (+)

24050974 .. 24056430

Gene Structure 5457 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g34000.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2628 bp

ATGGCGTCTCTACCATTGAAGAAGAACTACAAGTGCGTCCCCTCCCTGCAACCCTTCTACTCCGGCGGCGCCTTCGCCGTCTCTTCCGACGGTTCATTCATCGCCTGCGCTTTCGGCGAGTCCATCAACATCGTCGATGCCTCCAACTCCTCAATACGCTCCACTTTGGAAGGCGACTCCGAGGCCGTCACTGCTTTGACCCTCAGCCCCGACGACAAGTTCCTCTTCTCTTCCGGCCACAGTCGCCTCATCAGGGTTTGGGACCTCTCCACTTCCAAACGCGTCCGCTCTTGGAAGGGTCATGATGGGCCTGTGATGGGAATGGCTTGTCACCCTTCCGGGGGATATCTCGCCACCGCCGGAGCTGATAAGAAGGTTATTGTTTGGGATGTTGCCGGAAGCTTTGCCACTCATCACTTTAAAGGTCACAAAGGAGTTGTTTCTAGTCTTCTCTTCCATCCTGATCCTACTAAACAAATTCTTTTCTCCGCAAGTCATGATACAACTGTGAACGTCTGGGATCTAGATACTAAGAAGTGTGTCGCAACACTTACTGGGCATAACTCAACAGTCACTTCTATGGCATTGTCCGAAGATGGGTGCACGTTGCTCACCGCCGGAAGAGATAAGGTAGTAATGTTGTGGAACCTTGATGACTACAACTGCTTGAAGACTGTAACAACATATGAAGTCCTTGAAGCTGTATGCGTAATTCCTTCCGGAAGTCTTTTATCATCCTGTTTTGGTTCATCCAAGCAGCGGAATGAGAAGAAAAACAAGTCACCTGCAATATGTTTTACAACAGTTGGTGACCGTGGAATTGTACGAATTTGGAGTTCTGAAGGTGCAGTTTGCCTATTTGAGCAGAAGTCCTCAGATGTTACTATCTCATCAGATGACGATGAATCAAAAAGGGGCTTTACTGCAGCTTGCATGCTCCCATCAGATCAAGGGTTGCTCTGTGTGACAGCTGATCAGGAGTTCCTTTTATATTCTCCTGTTGAAAGCCCCGAAGGGATCTTTGGATTTTCTCTAAGCAAAAGACTTGTAGGAAACAATGGAGAGATTTTGGATATGAAGTTTTTAGGTGATGACGAACAATTTATAGCTGTCGCCACAAATACTGAACAGGTACGAGTGTTTGACGTTGCATCCATGTCATGTTCTCATGTATTGGCTGGTCATACTGAAATTGTTATGTGCCTTGACACCTGCGTATCAAGTTCTGGAAGAACACTTGTAGTGACAGGAAGCAAGGATAATAGTGTTAGGTTGTGGGATTCAGAAAGAAGATGTTGCCTTGGTATTGGCGTAGGTCACATGGGATCTGTTGGAGCTATTGCTTTCTCGAAGAAGCAGAGGGACTTCTTTGTCAGTGGTAGTAGTGATCGTACCCTCAAGATATGGAGTTTGGATGGTATCTCAGACGATATGGAAAAGCCAATAAATTTGAAAGCAAAAGCTGTTGTAGCAGCACATGATAAGGATATCAATTCAGTGGCTGTTGCACCAAATGATAGTTTAGTTTGTAGTGGTTCACAGGACCGCACTGCTTGTGTATGGAGGCTCCCAGATCTTGTACCAGTAGTTGTACTTAAGGGTCATAAAAGAGGTGTTTGGTCTGTAGAGTTTTCTCCAGTTGATCAATGCATTCTAACTGCATCTGGTGATAAAACAATAAAGATATGGGCTATATCGGATGGCTCATGCTTAAAATCATTTGAAGGACACATGTCAAGTGTCTATCGAGCATCGTTTCTTACTCGTGGGACCCAATTTATTTCTTCTGATGCTGATGGTTTGGTGAAGCTGTGGATGGTCAAAACAAATGAATGCATCGCTACATATGATCAGCATGAGGACAAGGTCTGGGCATTGACTGTTGGAAAGAAGACTGAAATTGTTGCAACTGGCAGCGGTGATGCTGCCATCAACCTGTGGTATGATTGTACTGCCTCTGATAAAGAGGAAGCTTTCCGCAGAGAGGAGGAAGGTGTCCTGAAAAGTCAAGAACTAGAAAATGCTGTCAGAGATGCTGACTACACTAAAGCAATTCAAATCGCATTTAAGCTTCGCAGGCCTCATAAACTTTACGAGTGTTTTCATGAACTTTTCAGGAAGAGAGAGGGTGAAAAGCAGATGGAAAAAGCCCTTCATGACTTTGGCAACGAAGAGTTGGCAGTGCTTCTTGAATATGTTAGGGAATGGAACACAAAGCCAAAGTTCTGCCATGTCGCGCAGTTTGTTTTATTTAAAATTCTCAACACTTTTAATCCAGAAGAGATTATTAAGGTAAAAGGAATTCAGAATATTCTTGAAGCTCTCACCCCATATTCTCAGAGGCACTATACCAGGGTAGACAGGCATGTGAGAAACACACTGTTGTTGGACTTCATTCTGCACTCGATGGCAGTTGTTGAACCAGATACAGGTGCTAGAGAATTAAACGAAGAGTCTTTGATTCCCTCTGATCTCAATCATAAAAATGAAACATGTAGTATGGAGGAGGATCAGGAACAGAGGCAGACAGCTGAAGAGTTGAAAGACAAATCAGCCTCGAGGAAACGAAAGTCGAAGAAATCAAAAGATGGTTCAAAGAAAAAAGCTAAAGCGTCCAGCTTAGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000462 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031974 GO:0031981 GO:0032040 GO:0032991 GO:0034388 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Utp13 WD40

Protein Analysis

876

Amino Acids

96.42

Weight (kDa)

6.27

Isoelectric Point (pI)

40.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_THOC3	PF25174	25 - 155	2.7e-18	THOC3 beta-propeller domain
WD40_WDHD1_1st	PF24817	25 - 100	5.4e-09	WDHD1 first WD40 domain
Beta-prop_WDR3_2nd	PF25172	26 - 130	2.2e-09	WDR3 second beta-propeller domain
Beta-prop_WDR5	PF25175	26 - 156	1.8e-20	WDR5 beta-propeller domain
Beta-prop_WDR36-Utp21_2nd	PF25168	27 - 95	4.1e-06	WDR36/Utp21 second beta-propeller domain
WD40_CDC20-Fz	PF24807	30 - 253	1.5e-26	CDC20/Fizzy WD40 domain
WD40_MABP1-WDR62_1st	PF24780	32 - 125	5e-06	MABP1/WDR62 first WD40 domain
Beta-prop_WDR3_1st	PF25173	33 - 217	6.1e-41	WDR3 first beta-propeller domain
WD40_Prp19	PF24814	36 - 250	3e-38	Prp19 WD40 domain
WD40_Gbeta	PF25391	40 - 246	3.7e-20	G protein beta WD-40 repeat protein
Beta-prop_TEP1_2nd	PF25047	48 - 279	1.3e-16	TEP-1 second beta-propeller
WD40	PF00400	53 - 88	7.6e-06	WD domain, G-beta repeat
EIF3I	PF24805	56 - 140	2.7e-07	EIF3I
Beta-prop_EML	PF23409	60 - 240	3.2e-11	Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_EML_2	PF23414	64 - 202	2.5e-15	Echinoderm microtubule-associated protein second beta-propeller
WD40_MABP1-WDR62_2nd	PF24782	68 - 175	3e-12	MABP1/WDR62 second WD40 domain
Beta-prop_WDR36-Utp21_1st	PF25171	72 - 218	5.5e-14	WDR36/Utp21 first beta-propeller
WDR55	PF24796	93 - 223	3.2e-11	WDR55
WD40	PF00400	93 - 130	3.4e-08	WD domain, G-beta repeat
Beta-prop_WDR3_2nd	PF25172	93 - 216	2.2e-17	WDR3 second beta-propeller domain
Beta-prop_WDR36-Utp21_2nd	PF25168	99 - 247	9e-16	WDR36/Utp21 second beta-propeller domain
WD40_WDHD1_1st	PF24817	104 - 184	3.7e-11	WDHD1 first WD40 domain
WD40_MABP1-WDR62_1st	PF24780	108 - 229	3e-10	MABP1/WDR62 first WD40 domain
Beta-prop_WDR90_POC16_2nd	PF23393	111 - 220	1.6e-10	WDR90/POC16, second beta-propeller
Beta-prop_WDR5	PF25175	112 - 247	2e-26	WDR5 beta-propeller domain
Beta-prop_THOC3	PF25174	137 - 246	2.2e-17	THOC3 beta-propeller domain
WD40	PF00400	138 - 174	3.1e-06	WD domain, G-beta repeat
EIF3I	PF24805	142 - 248	6.8e-09	EIF3I
Beta-prop_Aladin	PF25460	143 - 244	1.8e-07	Aladin seven-bladed propeller
Beta-prop_IFT140_1st	PF23383	147 - 223	3.4e-06	IFT140 first beta-propeller
WD40_MABP1-WDR62_2nd	PF24782	155 - 217	2.2e-07	MABP1/WDR62 second WD40 domain
Beta-prop_DCAF4	PF23761	157 - 229	4.4e-06	DDB1- and CUL4-associated factor 4 beta-propeller domain
WD40_WDHD1_1st	PF24817	157 - 248	2.9e-10	WDHD1 first WD40 domain
WD40	PF00400	179 - 216	4.6e-09	WD domain, G-beta repeat
Beta-prop_WDR3_1st	PF25173	184 - 245	8.6e-07	WDR3 first beta-propeller domain
Beta-prop_WDR3_2nd	PF25172	262 - 522	3.4e-19	WDR3 second beta-propeller domain
WD40_Gbeta	PF25391	314 - 471	2e-09	G protein beta WD-40 repeat protein
Beta-prop_WDR5	PF25175	315 - 471	6.7e-20	WDR5 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	351 - 472	1.4e-18	WDR3 first beta-propeller domain
Beta-prop_THOC3	PF25174	352 - 472	3.4e-16	THOC3 beta-propeller domain
WD40_Prp19	PF24814	354 - 472	1.2e-11	Prp19 WD40 domain
WD40_CDC20-Fz	PF24807	356 - 474	2.2e-11	CDC20/Fizzy WD40 domain
WD40_MABP1-WDR62_2nd	PF24782	364 - 606	1.8e-17	MABP1/WDR62 second WD40 domain
WD40_WDHD1_1st	PF24817	366 - 472	1.1e-08	WDHD1 first WD40 domain
Beta-prop_EML	PF23409	374 - 475	7e-06	Echinoderm microtubule-associated protein first beta-propeller
WD40	PF00400	387 - 427	1.2e-07	WD domain, G-beta repeat
Beta-prop_WDR36-Utp21_2nd	PF25168	431 - 572	3.6e-07	WDR36/Utp21 second beta-propeller domain
Beta-prop_TEP1_2nd	PF25047	436 - 611	1.3e-13	TEP-1 second beta-propeller
Beta-prop_EML_2	PF23414	448 - 625	1.1e-14	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR3_2nd	PF25172	457 - 648	2.5e-30	WDR3 second beta-propeller domain
WD40_CDC20-Fz	PF24807	483 - 647	1.9e-21	CDC20/Fizzy WD40 domain
WD40_Prp19	PF24814	486 - 647	3.5e-24	Prp19 WD40 domain
Beta-prop_SCAP	PF24017	486 - 610	1.7e-09	SCAP Beta-propeller
WD40_WDHD1_1st	PF24817	486 - 575	5.7e-12	WDHD1 first WD40 domain
Beta-prop_CAF1B_HIR1	PF24105	487 - 570	1.6e-08	CAF1B/HIR1 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	488 - 647	5.8e-33	WDR3 first beta-propeller domain
WD40	PF00400	489 - 521	3.2e-06	WD domain, G-beta repeat
Beta-prop_THOC3	PF25174	490 - 576	8.6e-15	THOC3 beta-propeller domain
EIF3I	PF24805	490 - 590	8.2e-11	EIF3I
Beta-prop_WDR5	PF25175	491 - 649	5.9e-35	WDR5 beta-propeller domain
Beta-prop_EML	PF23409	492 - 587	5.9e-08	Echinoderm microtubule-associated protein first beta-propeller
WDR55	PF24796	494 - 646	3.1e-14	WDR55
WD40	PF00400	528 - 563	1.4e-08	WD domain, G-beta repeat
Beta-prop_EML	PF23409	533 - 657	2.5e-09	Echinoderm microtubule-associated protein first beta-propeller
WD40_Gbeta	PF25391	547 - 652	2.5e-13	G protein beta WD-40 repeat protein
Beta-prop_WDR90_POC16_2nd	PF23393	548 - 655	6.9e-06	WDR90/POC16, second beta-propeller
Beta-prop_THOC3	PF25174	549 - 648	5e-15	THOC3 beta-propeller domain
EIF3I	PF24805	574 - 648	2.4e-08	EIF3I
Utp13	PF08625	670 - 803	3e-43	Utp13 specific WD40 associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0010104)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16750
fragaria_vesca	FvH4_7g34000 FvH4_7g34000
malus_domestica	MD01G1236400.v1.1 MD07G1309100.v1.1
prunus_persica	Prupe.2G326400_v2.0.a1 Prupe.2G326400_v2.0.a1
pyrus_communis	pycom01g24430 pycom07g28110
rosa_chinensis	RchiOBHm_Chr1g0384251
rosa_laevigata	RLG00000026054
rosa_multiflora	Rmu_sc0011271.1_g000002
rosa_roxburghii	Rroxscaffold_4G00276810
rosa_rugosa	Rorug01G0446100 Rorug01G0446200 Rorug01G0446200
rosa_samantha	Rh1AG471700 Rh1BG429400 Rh1CG442000 Rh1DG462100
rosa_wichuraiana	Rw1G040090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	793, 1220
AasI	GACNNNNNNGTC	1 cut(s)	1370
AbsI	CCTCGAGG	1 cut(s)	2557
Acc36I	ACCTGC	2 cut(s)	793, 1220
AccB1I	GGYRCC	1 cut(s)	68
AccBSI	CCGCTC	1 cut(s)	288
AccI	GTMKAC	1 cut(s)	2358
AccII	CGCG	2 cut(s)	282, 2237
AccIII	TCCGGA	1 cut(s)	719
AciI	CCGC	9 cut(s)	66, 286, 357, 489, 615, 760, 1546, 1917, 1978
AclWI	GGATC	5 cut(s)	458, 528, 1025, 1333, 2517
AcoI	YGGCCR	1 cut(s)	235
AcsI	RAATTY	5 cut(s)	477, 828, 1447, 2256, 2301
AcuI	CTGAAG	2 cut(s)	861, 2553
AcyI	GRCGYC	2 cut(s)	5, 69
AfaI	GTAC	6 cut(s)	825, 1134, 1393, 1581, 1593, 1951
AfiI	CCNNNNNNNGG	8 cut(s)	253, 317, 340, 341, 597, 759, 1984, 2429
AflII	CTTAAG	1 cut(s)	1595
AflIII	ACRYGT	3 cut(s)	280, 1731, 2492
AjnI	CCWGG	1 cut(s)	2351
AjuI	GAANNNNNNNTTGG	2 cut(s)	1005, 1037
Alw21I	GWGCWC	1 cut(s)	605
Alw26I	GTCTC	2 cut(s)	12, 85
Alw44I	GTGCAC	1 cut(s)	601
AlwI	GGATC	5 cut(s)	458, 528, 1025, 1333, 2517
AlwNI	CAGNNNCTG	1 cut(s)	1502
Ama87I	CYCGRG	1 cut(s)	2557
Aor13HI	TCCGGA	1 cut(s)	719
AoxI	GGCC	4 cut(s)	183, 235, 308, 2078
ApaLI	GTGCAC	1 cut(s)	601
ApeKI	GCWGC	5 cut(s)	757, 926, 1472, 1914, 1925
ApoI	RAATTY	5 cut(s)	477, 828, 1447, 2256, 2301
AspLEI	GCGC	3 cut(s)	71, 110, 2239
AspS9I	GGNCC	4 cut(s)	262, 308, 1543, 1770
AsuC2I	CCSGG	1 cut(s)	340
AvaI	CYCGRG	1 cut(s)	2557
AvaII	GGWCC	3 cut(s)	262, 1543, 1770
BaeGI	GKGCMC	1 cut(s)	605
BaeI	ACNNNNGTAYC	6 cut(s)	492, 525, 1124, 1157, 1200, 1233
BanI	GGYRCC	1 cut(s)	68
BarI	GAAGNNNNNNTAC	2 cut(s)	11, 43
BauI	CACGAG	1 cut(s)	1764
BbsI	GAAGAC	3 cut(s)	440, 677, 1898
Bbv12I	GWGCWC	1 cut(s)	605
BbvCI	CCTCAGC	1 cut(s)	203
BbvI	GCAGC	5 cut(s)	769, 938, 1484, 1912, 1926
BceAI	ACGGC	2 cut(s)	62, 170
BciT130I	CCWGG	1 cut(s)	2353
BclI	TGATCA	3 cut(s)	973, 1642, 1849
BcnI	CCSGG	1 cut(s)	340
BcoDI	GTCTC	2 cut(s)	12, 85
BfaI	CTAG	4 cut(s)	444, 524, 2015, 2436
BfmI	CTRYAG	2 cut(s)	924, 1623
BfoI	RGCGCY	1 cut(s)	72
BfrI	CTTAAG	1 cut(s)	1595
BfuAI	ACCTGC	2 cut(s)	793, 1220
BglII	AGATCT	1 cut(s)	1573
BisI	GCNGC	6 cut(s)	67, 758, 927, 1473, 1915, 1926
BlsI	GCNGC	6 cut(s)	68, 759, 928, 1474, 1916, 1927
Bme1390I	CCNGG	2 cut(s)	340, 2353
Bme18I	GGWCC	3 cut(s)	262, 1543, 1770
BmeT110I	CYCGRG	1 cut(s)	2557
BmgT120I	GGNCC	4 cut(s)	262, 308, 1543, 1770
BmiI	GGNNCC	6 cut(s)	70, 263, 647, 1568, 1771, 1772
BmrFI	CCNGG	2 cut(s)	340, 2353
BmrI	ACTGGG	1 cut(s)	564
BmsI	GCATC	8 cut(s)	127, 1160, 1670, 1760, 1780, 1845, 1912, 2023
BmuI	ACTGGG	1 cut(s)	564
BoxI	GACNNNNGTC	1 cut(s)	1732
BpiI	GAAGAC	3 cut(s)	440, 677, 1898
BpmI	CTGGAG	1 cut(s)	1620
Bpu10I	CCTNAGC	1 cut(s)	203
BpuEI	CTTGAG	1 cut(s)	1382
BpuMI	CCSGG	1 cut(s)	340
BsaBI	GATNNNNATC	1 cut(s)	2475
BsaHI	GRCGYC	2 cut(s)	5, 69
BsaJI	CCNNGG	5 cut(s)	180, 339, 814, 1300, 2352
BsaWI	WCCGGW	1 cut(s)	719
Bsc4I	CCNNNNNNNGG	8 cut(s)	253, 317, 340, 341, 597, 759, 1984, 2429
Bse1I	ACTGG	4 cut(s)	559, 1583, 1637, 1915
Bse8I	GATNNNNATC	1 cut(s)	2475
BseAI	TCCGGA	1 cut(s)	719
BseBI	CCWGG	1 cut(s)	2353
BseDI	CCNNGG	5 cut(s)	180, 339, 814, 1300, 2352
BseGI	GGATG	8 cut(s)	394, 457, 734, 749, 1151, 1420, 1705, 1821
BseJI	GATNNNNATC	1 cut(s)	2475
BseLI	CCNNNNNNNGG	8 cut(s)	253, 317, 340, 341, 597, 759, 1984, 2429
BseMII	CTCAG	4 cut(s)	217, 888, 1437, 2351
BseNI	ACTGG	4 cut(s)	559, 1583, 1637, 1915
BseRI	GAGGAG	3 cut(s)	139, 2000, 2519
BseSI	GKGCMC	1 cut(s)	605
BseXI	GCAGC	5 cut(s)	769, 938, 1484, 1912, 1926
BsgI	GTGCAG	2 cut(s)	867, 2384
Bsh1236I	CGCG	2 cut(s)	282, 2237
BshFI	GGCC	4 cut(s)	185, 237, 310, 2080
BshNI	GGYRCC	1 cut(s)	68
BsiHKAI	GWGCWC	1 cut(s)	605
BsiHKCI	CYCGRG	1 cut(s)	2557
BsiSI	CCGG	7 cut(s)	63, 234, 339, 360, 396, 618, 720
BslFI	GGGAC	4 cut(s)	23, 275, 1376, 1783
BslI	CCNNNNNNNGG	8 cut(s)	253, 317, 340, 341, 597, 759, 1984, 2429
BsmAI	GTCTC	2 cut(s)	12, 85
BsmBI	CGTCTC	2 cut(s)	12, 85
BsmFI	GGGAC	4 cut(s)	23, 275, 1376, 1783
BsmI	GAATGC	2 cut(s)	1650, 1838
BsnI	GGCC	4 cut(s)	185, 237, 310, 2080
BsoBI	CYCGRG	1 cut(s)	2557
Bsp1286I	GDGCHC	1 cut(s)	605
Bsp13I	TCCGGA	1 cut(s)	719
BspACI	CCGC	9 cut(s)	66, 286, 357, 489, 615, 760, 1546, 1917, 1978
BspANI	GGCC	4 cut(s)	185, 237, 310, 2080
BspCNI	CTCAG	4 cut(s)	216, 887, 1436, 2350
BspEI	TCCGGA	1 cut(s)	719
BspFNI	CGCG	2 cut(s)	282, 2237
BspHI	TCATGA	4 cut(s)	301, 496, 2104, 2155
BspLI	GGNNCC	6 cut(s)	70, 263, 647, 1568, 1771, 1772
BspMAI	CTGCAG	1 cut(s)	928
BspMI	ACCTGC	2 cut(s)	793, 1220
BspPI	GGATC	5 cut(s)	458, 528, 1025, 1333, 2517
BspT107I	GGYRCC	1 cut(s)	68
BspTI	CTTAAG	1 cut(s)	1595
BsrBI	CCGCTC	1 cut(s)	288
BsrI	ACTGG	4 cut(s)	559, 1583, 1637, 1915
BssECI	CCNNGG	5 cut(s)	180, 339, 814, 1300, 2352
BssNI	GRCGYC	2 cut(s)	5, 69
BssSI	CACGAG	1 cut(s)	1764
BssT1I	CCWWGG	1 cut(s)	1300
Bst2BI	CACGAG	1 cut(s)	1764
Bst2UI	CCWGG	1 cut(s)	2353
Bst4CI	ACNGT	9 cut(s)	92, 242, 508, 571, 676, 805, 815, 1882, 2382
BstACI	GRCGYC	2 cut(s)	5, 69
BstAFI	CTTAAG	1 cut(s)	1595
BstC8I	GCNNGC	4 cut(s)	106, 931, 935, 2078
BstDEI	CTNAG	7 cut(s)	203, 531, 874, 1034, 1423, 2337, 2620
BstDSI	CCRYGG	1 cut(s)	814
BstEII	GGTNACC	1 cut(s)	809
BstF5I	GGATG	8 cut(s)	394, 457, 734, 749, 1151, 1420, 1705, 1821
BstFNI	CGCG	2 cut(s)	282, 2237
BstH2I	RGCGCY	1 cut(s)	72
BstHHI	GCGC	3 cut(s)	71, 110, 2239
BstMAI	GTCTC	2 cut(s)	12, 85
BstMWI	GCNNNNNNNGC	5 cut(s)	114, 191, 243, 1469, 2077
BstNI	CCWGG	1 cut(s)	2353
BstNSI	RCATGY	4 cut(s)	937, 1735, 2369, 2496
BstPAI	GACNNNNGTC	1 cut(s)	1732
BstPI	GGTNACC	1 cut(s)	809
BstSCI	CCNGG	2 cut(s)	338, 2351
BstSFI	CTRYAG	2 cut(s)	924, 1623
BstSLI	GKGCMC	1 cut(s)	605
BstUI	CGCG	2 cut(s)	282, 2237
BstV1I	GCAGC	5 cut(s)	769, 938, 1484, 1912, 1926
BstV2I	GAAGAC	3 cut(s)	440, 677, 1898
BstX2I	RGATCY	4 cut(s)	520, 1017, 1325, 1573
BstYI	RGATCY	4 cut(s)	520, 1017, 1325, 1573
BsuRI	GGCC	4 cut(s)	185, 237, 310, 2080
BtgI	CCRYGG	1 cut(s)	814
BtgZI	GCGATG	2 cut(s)	85, 1822
BtsCI	GGATG	8 cut(s)	394, 457, 734, 749, 1151, 1420, 1705, 1821
BtsI	GCAGTG	3 cut(s)	189, 1548, 2187
BtsIMutI	CAGTG	6 cut(s)	189, 1381, 1503, 1548, 2187, 2378
BveI	ACCTGC	2 cut(s)	793, 1220
Cac8I	GCNNGC	4 cut(s)	106, 931, 935, 2078
CaiI	CAGNNNCTG	1 cut(s)	1502
CciI	TCATGA	4 cut(s)	301, 496, 2104, 2155
CfoI	GCGC	3 cut(s)	71, 110, 2239
Cfr13I	GGNCC	4 cut(s)	262, 308, 1543, 1770
CseI	GACGC	3 cut(s)	25, 271, 2601
Csp6I	GTAC	6 cut(s)	824, 1133, 1392, 1580, 1592, 1950
CviQI	GTAC	6 cut(s)	824, 1133, 1392, 1580, 1592, 1950
DdeI	CTNAG	7 cut(s)	203, 531, 874, 1034, 1423, 2337, 2620
DinI	GGCGCC	1 cut(s)	70
DraI	TTTAAA	2 cut(s)	421, 2254
DrdI	GACNNNNNNGTC	1 cut(s)	1370
DseDI	GACNNNNNNGTC	1 cut(s)	1370
EaeI	YGGCCR	1 cut(s)	235
Eco130I	CCWWGG	1 cut(s)	1300
Eco147I	AGGCCT	1 cut(s)	2080
Eco32I	GATATC	2 cut(s)	347, 1489
Eco47I	GGWCC	3 cut(s)	262, 1543, 1770
Eco57I	CTGAAG	2 cut(s)	861, 2553
Eco88I	CYCGRG	1 cut(s)	2557
Eco91I	GGTNACC	1 cut(s)	809
EcoO109I	RGGNCCY	2 cut(s)	262, 1770
EcoO65I	GGTNACC	1 cut(s)	809
EcoRI	GAATTC	1 cut(s)	2301
EcoRII	CCWGG	1 cut(s)	2351
EcoRV	GATATC	2 cut(s)	347, 1489
EcoT14I	CCWWGG	1 cut(s)	1300
EcoT22I	ATGCAT	2 cut(s)	1652, 1838
EgeI	GGCGCC	1 cut(s)	70
EheI	GGCGCC	1 cut(s)	70
ErhI	CCWWGG	1 cut(s)	1300
Esp3I	CGTCTC	2 cut(s)	12, 85
FalI	AAGNNNNNCTT	2 cut(s)	209, 241
FaqI	GGGAC	4 cut(s)	23, 275, 1376, 1783
FauNDI	CATATG	2 cut(s)	685, 1846
FbaI	TGATCA	3 cut(s)	973, 1642, 1849
FblI	GTMKAC	1 cut(s)	2358
Fnu4HI	GCNGC	6 cut(s)	67, 758, 927, 1473, 1915, 1926
FokI	GGATG	8 cut(s)	401, 444, 721, 736, 1138, 1427, 1712, 1828
Fsp4HI	GCNGC	6 cut(s)	67, 758, 927, 1473, 1915, 1926
FspBI	CTAG	4 cut(s)	444, 524, 2015, 2436
GlaI	GCGC	3 cut(s)	70, 109, 2238
GluI	GCNGC	6 cut(s)	67, 758, 927, 1473, 1915, 1926
GsuI	CTGGAG	1 cut(s)	1620
HaeII	RGCGCY	1 cut(s)	72
HaeIII	GGCC	4 cut(s)	185, 237, 310, 2080
HapII	CCGG	7 cut(s)	63, 234, 339, 360, 396, 618, 720
HgaI	GACGC	3 cut(s)	25, 271, 2601
HhaI	GCGC	3 cut(s)	71, 110, 2239
Hin1I	GRCGYC	2 cut(s)	5, 69
Hin6I	GCGC	3 cut(s)	69, 108, 2237
HinP1I	GCGC	3 cut(s)	69, 108, 2237
HindIII	AAGCTT	3 cut(s)	400, 1971, 2069
HinfI	GANTC	6 cut(s)	119, 176, 905, 1280, 2453, 2461
HpaII	CCGG	7 cut(s)	63, 234, 339, 360, 396, 618, 720
Hpy166II	GTNNAC	4 cut(s)	511, 603, 1538, 2359
Hpy8I	GTNNAC	4 cut(s)	511, 603, 1538, 2359
Hpy99I	CGWCG	3 cut(s)	92, 137, 215
HpyCH4III	ACNGT	9 cut(s)	92, 242, 508, 571, 676, 805, 815, 1882, 2382
HpyCH4IV	ACGT	3 cut(s)	513, 605, 1146
HpyF10VI	GCNNNNNNNGC	5 cut(s)	114, 191, 243, 1469, 2077
HpyF3I	CTNAG	7 cut(s)	203, 531, 874, 1034, 1423, 2337, 2620
HpySE526I	ACGT	3 cut(s)	513, 605, 1146
Hsp92I	GRCGYC	2 cut(s)	5, 69
HspAI	GCGC	3 cut(s)	69, 108, 2237
KasI	GGCGCC	1 cut(s)	68
KflI	GGGWCCC	1 cut(s)	1770
Kpn2I	TCCGGA	1 cut(s)	719
Ksp22I	TGATCA	3 cut(s)	973, 1642, 1849
LmnI	GCTCC	5 cut(s)	164, 362, 942, 1334, 1572
Lsp1109I	GCAGC	5 cut(s)	769, 938, 1484, 1912, 1926
LweI	GCATC	8 cut(s)	127, 1160, 1670, 1760, 1780, 1845, 1912, 2023
MaeI	CTAG	4 cut(s)	444, 524, 2015, 2436
MaeII	ACGT	3 cut(s)	513, 605, 1146
MbiI	CCGCTC	1 cut(s)	288
MflI	RGATCY	4 cut(s)	520, 1017, 1325, 1573
MhlI	GDGCHC	1 cut(s)	605
MluI	ACGCGT	1 cut(s)	280
Mly113I	GGCGCC	1 cut(s)	69
MlyI	GAGTC	3 cut(s)	128, 170, 2462
MmeI	TCCRAC	5 cut(s)	111, 168, 1312, 1864, 2367
Mph1103I	ATGCAT	2 cut(s)	1652, 1838
MroI	TCCGGA	1 cut(s)	719
MseI	TTAA	8 cut(s)	420, 1596, 1712, 2067, 2253, 2271, 2289, 2444
MslI	CAYNNNNRTG	2 cut(s)	578, 2484
MspA1I	CMGCKG	4 cut(s)	760, 971, 1917, 2531
MspCI	CTTAAG	1 cut(s)	1595
MspI	CCGG	7 cut(s)	63, 234, 339, 360, 396, 618, 720
MspR9I	CCNGG	2 cut(s)	340, 2353
Mva1269I	GAATGC	2 cut(s)	1650, 1838
MvaI	CCWGG	1 cut(s)	2353
MvnI	CGCG	2 cut(s)	282, 2237
MwoI	GCNNNNNNNGC	5 cut(s)	114, 191, 243, 1469, 2077
NarI	GGCGCC	1 cut(s)	69
NciI	CCSGG	1 cut(s)	340
NdeI	CATATG	2 cut(s)	685, 1846
NlaIV	GGNNCC	6 cut(s)	70, 263, 647, 1568, 1771, 1772
NmuCI	GTSAC	9 cut(s)	187, 329, 425, 571, 780, 809, 964, 1243, 1316
NsiI	ATGCAT	2 cut(s)	1652, 1838
NspI	RCATGY	4 cut(s)	937, 1735, 2369, 2496
PaeI	GCATGC	1 cut(s)	937
PaeR7I	CTCGAG	1 cut(s)	2557
PagI	TCATGA	4 cut(s)	301, 496, 2104, 2155
PaqCI	CACCTGC	2 cut(s)	793, 1220
PceI	AGGCCT	1 cut(s)	2080
PciI	ACATGT	2 cut(s)	1731, 2492
PctI	GAATGC	2 cut(s)	1650, 1838
PfeI	GAWTC	3 cut(s)	905, 1280, 2461
PflFI	GACNNNGTC	1 cut(s)	1865
PkrI	GCNGC	6 cut(s)	68, 759, 928, 1474, 1916, 1927
PleI	GAGTC	3 cut(s)	127, 170, 2461
PluTI	GGCGCC	1 cut(s)	72
PpsI	GAGTC	3 cut(s)	127, 170, 2461
PpuMI	RGGWCCY	2 cut(s)	262, 1770
PscI	ACATGT	2 cut(s)	1731, 2492
PshAI	GACNNNNGTC	1 cut(s)	1732
Psp5II	RGGWCCY	2 cut(s)	262, 1770
Psp6I	CCWGG	1 cut(s)	2351
PspEI	GGTNACC	1 cut(s)	809
PspGI	CCWGG	1 cut(s)	2351
PspN4I	GGNNCC	6 cut(s)	70, 263, 647, 1568, 1771, 1772
PspPI	GGNCC	4 cut(s)	262, 308, 1543, 1770
PspPPI	RGGWCCY	2 cut(s)	262, 1770
PspXI	VCTCGAGB	1 cut(s)	2557
PstI	CTGCAG	1 cut(s)	928
PstNI	CAGNNNCTG	1 cut(s)	1502
PsuI	RGATCY	4 cut(s)	520, 1017, 1325, 1573
PsyI	GACNNNGTC	1 cut(s)	1865
PvuII	CAGCTG	2 cut(s)	971, 2531
RsaI	GTAC	6 cut(s)	825, 1134, 1393, 1581, 1593, 1951
RsaNI	GTAC	6 cut(s)	824, 1133, 1392, 1580, 1592, 1950
RseI	CAYNNNNRTG	2 cut(s)	578, 2484
SaqAI	TTAA	8 cut(s)	420, 1596, 1712, 2067, 2253, 2271, 2289, 2444
SatI	GCNGC	6 cut(s)	67, 758, 927, 1473, 1915, 1926
Sau96I	GGNCC	4 cut(s)	262, 308, 1543, 1770
SchI	GAGTC	3 cut(s)	128, 170, 2462
ScrFI	CCNGG	2 cut(s)	340, 2353
SduI	GDGCHC	1 cut(s)	605
SfaNI	GCATC	8 cut(s)	127, 1160, 1670, 1760, 1780, 1845, 1912, 2023
SfcI	CTRYAG	2 cut(s)	924, 1623
SfoI	GGCGCC	1 cut(s)	70
Sfr274I	CTCGAG	1 cut(s)	2557
SinI	GGWCC	3 cut(s)	262, 1543, 1770
SlaI	CTCGAG	1 cut(s)	2557
SmiMI	CAYNNNNRTG	2 cut(s)	578, 2484
SmlI	CTYRAG	3 cut(s)	1397, 1595, 2557
SmoI	CTYRAG	3 cut(s)	1397, 1595, 2557
SphI	GCATGC	1 cut(s)	937
SseBI	AGGCCT	1 cut(s)	2080
SsiI	CCGC	9 cut(s)	66, 286, 357, 489, 615, 760, 1546, 1917, 1978
SspDI	GGCGCC	1 cut(s)	68
SspI	AATATT	1 cut(s)	2311
SspMI	CTAG	4 cut(s)	444, 524, 2015, 2436
StuI	AGGCCT	1 cut(s)	2080
StyD4I	CCNGG	2 cut(s)	338, 2351
StyI	CCWWGG	1 cut(s)	1300
TaaI	ACNGT	9 cut(s)	92, 242, 508, 571, 676, 805, 815, 1882, 2382
TaiI	ACGT	3 cut(s)	516, 608, 1149
TaqI	TCGA	6 cut(s)	135, 1349, 1747, 2405, 2558, 2573
TatI	WGTACW	2 cut(s)	1591, 1949
TauI	GCSGC	1 cut(s)	69
TfiI	GAWTC	3 cut(s)	905, 1280, 2461
Tru1I	TTAA	8 cut(s)	420, 1596, 1712, 2067, 2253, 2271, 2289, 2444
Tru9I	TTAA	8 cut(s)	420, 1596, 1712, 2067, 2253, 2271, 2289, 2444
TscAI	CASTG	6 cut(s)	196, 1381, 1503, 1555, 2187, 2385
TseFI	GTSAC	9 cut(s)	187, 329, 425, 571, 780, 809, 964, 1243, 1316
TseI	GCWGC	5 cut(s)	757, 926, 1472, 1914, 1925
Tsp45I	GTSAC	9 cut(s)	187, 329, 425, 571, 780, 809, 964, 1243, 1316
TspRI	CASTG	6 cut(s)	196, 1381, 1503, 1555, 2187, 2385
Tth111I	GACNNNGTC	1 cut(s)	1865
Vha464I	CTTAAG	1 cut(s)	1595
VneI	GTGCAC	1 cut(s)	601
VpaK11BI	GGWCC	3 cut(s)	262, 1543, 1770
XapI	RAATTY	5 cut(s)	477, 828, 1447, 2256, 2301
XbaI	TCTAGA	1 cut(s)	523
XceI	RCATGY	4 cut(s)	937, 1735, 2369, 2496
XhoI	CTCGAG	1 cut(s)	2557
XmiI	GTMKAC	1 cut(s)	2358
XspI	CTAG	4 cut(s)	444, 524, 2015, 2436
Zsp2I	ATGCAT	2 cut(s)	1652, 1838

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.