Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0010104

Physical Location & Seq

Genomic Coordinates Forward (+)

36447822 .. 36453694

Gene Structure 5873 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1309100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2616 bp

ATGGCGTCTCTACCTCTGAAGAAGAACTACCGGTGCGTGCCATCTCTGCAGCAGTTCTACTCCGGCGGTCCCTTCGCCGTCTCATCCGACGGCTCATTCATCGCCTGCAAGTGCGGCGAATCCATTAAGATCGTGGATTCATCGAACGCCTCGATTCGGTCTACCATTGAAGGCGACTCAGATGAAGTTACCGCTTTGGCCCTCAGCCCCGACAATAGGCTGCTCTTCTCCGCCGGTCACAGTCGCCAAATTAGGATTTGGGACCTCTCCACCTTGAAGTGCGTGCGTTCTTGGAAGGGTCATGAGGGGCCAGTGATGGGAATGTCTTGTCACCCGTCTGGTGGATTGCTTGCGACTGCCGGAGCTGATAGGAAGGTTCTTGTTTGGGATGTTGATGGCAGCTTTTGCACTCATTACTTTAAAGGCCACAAAGGGGTTGTTTCTAGTGTTCTCTTCCATCCTGATCCTACTAAACAACTTCTTTTCTCTGCAAGCGATGATACAAATGTGCATGTTTGGGACCTATTAACCAAGAAGTGCGTTGCGACGCTTAATGCGCATAACTCAACAGTAACTTCTATGGCACTGTCTGAAGACGGATGGACTTTGCTCACAGCTGGAAGAGATAAGGTTGTAATCTTGTGGGACCTTCATGACTATATCTGCATGAAGACTGTAACAACATATGAGGTTCTTGAAGCTGTGTGTGCAATCCCTTCTGGAACTCCATTATCATCCTATTTGGGTTCCTGCAAGAAGCAAAGTGGGAAGAAAAGTGGATTACCTGAAATTTGTTTTATAACAGTTGGTGACCGTGGGATTGTACGGATTTGGAATTCTGAAGGTGCAGTTTGCCTATATGAGCAAAAGTCCTCAGATGTTACTCTATCTTCAGATGTGGATCAATCAAATAGGGGTTTCACCGCAGCTGTCATGCTTCCTTCAGATAAAGGGTTGCTTTGTGTGACTGCTGACCAGGAGTTCCTTTTATATTCCCCAATTAAGTTGCCAGAGGGGACGCTGGAATTTGAATTGAGCAAAAGACTTGTAGGTTACAACGATGAGATTGTGGATATGAAGTTTGTAGGAGATGAGGAACAATTTCTTGCTGTTGCCACAAATCTTGAACAGGTACGAGTATATGACATTGCATCCATGTCATGTTCGTATGTATTGGCAGGTCATACCGGAATTGTTCTATGCCTTGACACCTGTGTATCAAGTTGTGGAAAACCACTTATTGCGACCGGAAGCAAAGACAACACTGTTCGGTTGTGGGATTCAGAAAGCAAATGTTGCCTTGGTCTTGGCATAGGTCATATGGGAGGTATTGGAGCTATTGCTTTCTCAAAAAAGCGGAAAGACTTCTTCGTTAGTGGTAGTAGTGATCGTACCCTCAAGGTGTGGAGTTTGGATGGTCTTTCAGACAATGCGGAAAAACCAGTGAATCTGAAAGCAAAGGCCGGTGTAGCAGCCCATGATAAGGATATTAATTCAGTAGCTGTTGCACCAAATGATAGTTTAGTTTGTAGCGGCTCCCAGGATCGCACTGCTTGTGTATGGAGGCTTCCGGATCTTGTACCAGTAGTTGTACTTAAGGGTCATAAAAGGGGAGTTTGGTCTGTAGAGTTCTCTCCAGTTGATCAATGTGTTATAACGGCTTCTGGTGATAAAACAATAAAGATATGGGCCATATCTGATGGTTCATGCTTGAAAACATTTGAAGGGCATACGTCAAGTGTATTAAGAGCATCATTTCTTACTCGTGGAACCCAATTTATTTCTTCAGGTGCTGATGGGTTGGTAAAACTATGGATGGTCAAAACCGATGAATGCATTGCTACGTATGATCAGCATGATGACAAGGTTTATGCCTTGGCTGTCGGAAAAAAGACAGAAATGCTTGCAACTGGCAGCAGCGATGCTGTCATCAATATGTGGTATGATTGTACTGCTTCTGATAAAGAGGAAGCTTTTCGTAAGGAGGAGGAAGGTGTTTTAAAGAATCAAGAACTAGAAAATGCTGTATTAGATGCTGACTTTTCTAAAGCAATTCAAGTTGCATTTGAGCTTCGCAGGCCTCATAAGCTTTATCAGTGCTTTTCTGAAATCTGGAGGAAGAGAGAAACTGAACAGCAGATGGAGAAAGCCCTTCTTGCCCTCGGCGAGGAAGAGATCAGGCTACTATTTGAATATGTTCGAGAATGGAATACAAAGCCAAAGCTCTGTCATGTTGCACACTATGTGCTTTTCAAAGTCTTCAACATCCTCAGTCCAACAAAGATTAATGAGATAAAAGGCATTGGGGAAATCCTTGAAGGTCTCCTCTCGTATTCTCAGAGGCATTTTAGCAGAATGGACAGGCACGAAACAAACACGTATTTGGTGAACTACACTCTGACTGGAATGTCAGTCATTGAACCAGAGACAGATACAAGAGTATTGCAGGACAAGTCTTTGATGCACTCCGCTGCGGACGATGAGAATGGGACGTTAATAAACGTACCTGAAGATGAGGAGCGAAAGACCTCTGAGTGGTTGAAAGAAACGGCAGCTACGAAAAAACGGAAGTCAAAGAAATCGAAAGATGGTTCCAGTAAGAAAGTTAAGGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000462 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031974 GO:0031981 GO:0032040 GO:0032991 GO:0034388 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Utp13 WD40

Protein Analysis

872

Amino Acids

95.89

Weight (kDa)

6.14

Isoelectric Point (pI)

38.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_DCAF4	PF23761	25 - 131	1.9e-07	DDB1- and CUL4-associated factor 4 beta-propeller domain
Beta-prop_THOC3	PF25174	25 - 155	1.9e-20	THOC3 beta-propeller domain
WD40_WDHD1_1st	PF24817	26 - 100	1.8e-08	WDHD1 first WD40 domain
Beta-prop_WDR5	PF25175	27 - 156	1.6e-23	WDR5 beta-propeller domain
Beta-prop_WDR75_1st	PF23869	27 - 89	7e-06	WD repeat-containing protein 75 first beta-propeller
WD40_CDC20-Fz	PF24807	29 - 182	4e-18	CDC20/Fizzy WD40 domain
Beta-prop_WDR3_1st	PF25173	33 - 217	1.7e-38	WDR3 first beta-propeller domain
Beta-prop_WDR36-Utp21_1st	PF25171	34 - 215	3.9e-14	WDR36/Utp21 first beta-propeller
WD40_Prp19	PF24814	40 - 230	2.4e-37	Prp19 WD40 domain
Beta-prop_EML	PF23409	43 - 242	6.4e-11	Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_TEP1_2nd	PF25047	47 - 227	1.4e-17	TEP-1 second beta-propeller
WD40	PF00400	54 - 88	2e-06	WD domain, G-beta repeat
Beta-prop_WDR3_2nd	PF25172	61 - 216	7.2e-24	WDR3 second beta-propeller domain
Beta-prop_EML_2	PF23414	64 - 201	2.3e-14	Echinoderm microtubule-associated protein second beta-propeller
WD40_Gbeta	PF25391	71 - 157	1.2e-08	G protein beta WD-40 repeat protein
WD40_MABP1-WDR62_2nd	PF24782	78 - 175	5.8e-10	MABP1/WDR62 second WD40 domain
WD40	PF00400	93 - 130	2.3e-08	WD domain, G-beta repeat
WDR55	PF24796	96 - 219	7.7e-11	WDR55
Beta-prop_CAF1B_HIR1	PF24105	98 - 186	1.1e-06	CAF1B/HIR1 beta-propeller domain
Beta-prop_WDR36-Utp21_2nd	PF25168	99 - 231	1.7e-13	WDR36/Utp21 second beta-propeller domain
WD40_WDHD1_1st	PF24817	104 - 187	1.3e-10	WDHD1 first WD40 domain
Beta-prop_WDR90_POC16_2nd	PF23393	111 - 219	9.2e-10	WDR90/POC16, second beta-propeller
Beta-prop_SCAP	PF24017	114 - 219	2.1e-07	SCAP Beta-propeller
WD40_MABP1-WDR62_1st	PF24780	116 - 219	9.9e-07	MABP1/WDR62 first WD40 domain
WD40	PF00400	136 - 174	2.1e-06	WD domain, G-beta repeat
Beta-prop_WDR5	PF25175	139 - 229	2.3e-18	WDR5 beta-propeller domain
EIF3I	PF24805	141 - 243	3.6e-07	EIF3I
Beta-prop_Aladin	PF25460	147 - 242	1.7e-06	Aladin seven-bladed propeller
Beta-prop_IFT140_1st	PF23383	149 - 428	3.8e-06	IFT140 first beta-propeller
Beta-prop_THOC3	PF25174	156 - 230	1.2e-14	THOC3 beta-propeller domain
WD40_CDC20-Fz	PF24807	158 - 226	1.7e-07	CDC20/Fizzy WD40 domain
WD40_Gbeta	PF25391	162 - 245	2.8e-08	G protein beta WD-40 repeat protein
Beta-prop_WDR3_2nd	PF25172	265 - 522	3e-18	WDR3 second beta-propeller domain
Beta-prop_WDR5	PF25175	312 - 471	3.7e-18	WDR5 beta-propeller domain
WD40_Gbeta	PF25391	314 - 471	3e-07	G protein beta WD-40 repeat protein
WD40_CDC20-Fz	PF24807	346 - 471	2e-10	CDC20/Fizzy WD40 domain
Beta-prop_THOC3	PF25174	350 - 472	3e-15	THOC3 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	351 - 472	5.6e-17	WDR3 first beta-propeller domain
WD40_MABP1-WDR62_2nd	PF24782	365 - 606	2.4e-19	MABP1/WDR62 second WD40 domain
WD40_WDHD1_1st	PF24817	366 - 472	1.1e-07	WDHD1 first WD40 domain
WD40	PF00400	387 - 427	4.1e-07	WD domain, G-beta repeat
WD40_Prp19	PF24814	399 - 473	1e-07	Prp19 WD40 domain
Beta-prop_TEP1_2nd	PF25047	437 - 608	1e-13	TEP-1 second beta-propeller
Beta-prop_WDR3_2nd	PF25172	440 - 648	8.4e-31	WDR3 second beta-propeller domain
Beta-prop_WDR36-Utp21_2nd	PF25168	441 - 574	9e-07	WDR36/Utp21 second beta-propeller domain
Beta-prop_EML_2	PF23414	452 - 589	1.3e-11	Echinoderm microtubule-associated protein second beta-propeller
WD40_CDC20-Fz	PF24807	485 - 647	1.8e-20	CDC20/Fizzy WD40 domain
WD40_Prp19	PF24814	486 - 647	1.6e-25	Prp19 WD40 domain
Beta-prop_WDR3_1st	PF25173	490 - 647	8.4e-33	WDR3 first beta-propeller domain
Beta-prop_CAF1B_HIR1	PF24105	490 - 573	1.2e-08	CAF1B/HIR1 beta-propeller domain
Beta-prop_WDR36-Utp21_2nd	PF25168	491 - 650	1e-08	WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR5	PF25175	491 - 649	5.3e-37	WDR5 beta-propeller domain
Beta-prop_SCAP	PF24017	491 - 605	6.8e-10	SCAP Beta-propeller
EIF3I	PF24805	491 - 593	1.5e-11	EIF3I
WD40	PF00400	492 - 521	6.5e-06	WD domain, G-beta repeat
Beta-prop_EML	PF23409	492 - 597	2e-09	Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_THOC3	PF25174	493 - 579	3.2e-15	THOC3 beta-propeller domain
WDR55	PF24796	494 - 647	1.3e-12	WDR55
WD40_WDHD1_1st	PF24817	494 - 574	9.8e-12	WDHD1 first WD40 domain
WD40	PF00400	528 - 563	1.8e-08	WD domain, G-beta repeat
WD40_MABP1-WDR62_2nd	PF24782	539 - 647	2.4e-07	MABP1/WDR62 second WD40 domain
Beta-prop_IFT122_1st	PF23381	541 - 647	1e-05	IFT122 first beta-propeller
Beta-prop_WDR90_POC16_2nd	PF23393	547 - 677	1.4e-07	WDR90/POC16, second beta-propeller
WD40_Gbeta	PF25391	548 - 652	4.6e-14	G protein beta WD-40 repeat protein
Beta-prop_SCAP	PF24017	551 - 651	2.4e-06	SCAP Beta-propeller
Beta-prop_THOC3	PF25174	555 - 648	2.1e-15	THOC3 beta-propeller domain
WD40	PF00400	568 - 605	1.7e-06	WD domain, G-beta repeat
EIF3I	PF24805	574 - 650	1.1e-07	EIF3I
Utp13	PF08625	669 - 803	5.4e-39	Utp13 specific WD40 associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010104)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16750
fragaria_vesca	FvH4_7g34000 FvH4_7g34000
malus_domestica	MD01G1236400.v1.1 MD07G1309100.v1.1
prunus_persica	Prupe.2G326400_v2.0.a1 Prupe.2G326400_v2.0.a1
pyrus_communis	pycom01g24430 pycom07g28110
rosa_chinensis	RchiOBHm_Chr1g0384251
rosa_laevigata	RLG00000026054
rosa_multiflora	Rmu_sc0011271.1_g000002
rosa_roxburghii	Rroxscaffold_4G00276810
rosa_rugosa	Rorug01G0446100 Rorug01G0446200 Rorug01G0446200
rosa_samantha	Rh1AG471700 Rh1BG429400 Rh1CG442000 Rh1DG462100
rosa_wichuraiana	Rw1G040090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	800, 1655
AasI	GACNNNNNNGTC	1 cut(s)	2407
Acc16I	TGCGCA	1 cut(s)	558
Acc36I	ACCTGC	1 cut(s)	1169
AccI	GTMKAC	1 cut(s)	161
AccIII	TCCGGA	1 cut(s)	1570
AclWI	GGATC	4 cut(s)	458, 909, 1551, 1581
AcsI	RAATTY	3 cut(s)	789, 835, 1025
AcuI	CTGAAG	7 cut(s)	38, 612, 861, 876, 927, 1770, 2529
AcyI	GRCGYC	1 cut(s)	5
AdeI	CACNNNGTG	1 cut(s)	2245
AfaI	GTAC	7 cut(s)	825, 1134, 1393, 1581, 1593, 1951, 2505
AfiI	CCNNNNNNNGG	8 cut(s)	156, 216, 317, 341, 433, 1483, 2167, 2535
AflII	CTTAAG	1 cut(s)	1595
AflIII	ACRYGT	1 cut(s)	2376
AgeI	ACCGGT	1 cut(s)	30
AjnI	CCWGG	2 cut(s)	975, 1539
Alw26I	GTCTC	4 cut(s)	12, 85, 2327, 2420
AlwI	GGATC	4 cut(s)	458, 909, 1551, 1581
AlwNI	CAGNNNCTG	2 cut(s)	1502, 1793
Aor13HI	TCCGGA	1 cut(s)	1570
AoxI	GGCC	6 cut(s)	198, 308, 424, 1461, 1689, 2078
ApeKI	GCWGC	9 cut(s)	49, 220, 399, 926, 1472, 1914, 1917, 2471, 2552
ApoI	RAATTY	3 cut(s)	789, 835, 1025
AseI	ATTAAT	2 cut(s)	1491, 2286
AsiGI	ACCGGT	1 cut(s)	30
Asp700I	GAANNNNTTC	4 cut(s)	1101, 1364, 1974, 2196
AspLEI	GCGC	1 cut(s)	559
AspS9I	GGNCC	7 cut(s)	68, 199, 262, 308, 520, 646, 1689
AsuHPI	GGTGA	5 cut(s)	323, 821, 913, 1679, 2398
AvaII	GGWCC	4 cut(s)	68, 262, 520, 646
BaeI	ACNNNNGTAYC	6 cut(s)	492, 525, 1200, 1233, 2424, 2457
BarI	GAAGNNNNNNTAC	4 cut(s)	11, 43, 1551, 1583
BauI	CACGAG	1 cut(s)	1764
BbsI	GAAGAC	3 cut(s)	600, 677, 2251
BbvCI	CCTCAGC	1 cut(s)	203
BbvI	GCAGC	9 cut(s)	61, 207, 411, 938, 1484, 1926, 1929, 2458, 2564
BceAI	ACGGC	4 cut(s)	62, 106, 1674, 2565
BciT130I	CCWGG	2 cut(s)	977, 1541
BclI	TGATCA	2 cut(s)	1642, 1849
BcoDI	GTCTC	4 cut(s)	12, 85, 2327, 2420
BfaI	CTAG	2 cut(s)	444, 2015
BfmI	CTRYAG	2 cut(s)	47, 1623
BfrI	CTTAAG	1 cut(s)	1595
BfuAI	ACCTGC	1 cut(s)	1169
Bme1390I	CCNGG	2 cut(s)	977, 1541
Bme18I	GGWCC	4 cut(s)	68, 262, 520, 646
BmgT120I	GGNCC	7 cut(s)	68, 199, 262, 308, 520, 646, 1689
BmiI	GGNNCC	9 cut(s)	70, 263, 309, 521, 647, 748, 1537, 1771, 2593
BmrFI	CCNGG	2 cut(s)	977, 1541
BmsI	GCATC	5 cut(s)	1160, 1760, 1912, 2023, 2451
BpiI	GAAGAC	3 cut(s)	600, 677, 2251
BpmI	CTGGAG	2 cut(s)	1620, 2134
Bpu10I	CCTNAGC	1 cut(s)	203
BpuEI	CTTGAG	1 cut(s)	1382
BsaAI	YACGTR	2 cut(s)	1845, 2379
BsaBI	GATNNNNATC	1 cut(s)	900
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	1 cut(s)	2327
BsaJI	CCNNGG	5 cut(s)	814, 1300, 1539, 1875, 2161
BsaWI	WCCGGW	4 cut(s)	30, 1187, 1247, 1570
Bsc4I	CCNNNNNNNGG	8 cut(s)	156, 216, 317, 341, 433, 1483, 2167, 2535
Bse118I	RCCGGY	3 cut(s)	30, 233, 1463
Bse1I	ACTGG	7 cut(s)	311, 1442, 1583, 1637, 1915, 2407, 2595
Bse3DI	GCAATG	2 cut(s)	1146, 1836
Bse8I	GATNNNNATC	1 cut(s)	900
BseAI	TCCGGA	1 cut(s)	1570
BseBI	CCWGG	2 cut(s)	977, 1541
BseDI	CCNNGG	5 cut(s)	814, 1300, 1539, 1875, 2161
BseGI	GGATG	9 cut(s)	83, 394, 457, 605, 734, 1151, 1420, 1821, 2265
BseJI	GATNNNNATC	1 cut(s)	900
BseLI	CCNNNNNNNGG	8 cut(s)	156, 216, 317, 341, 433, 1483, 2167, 2535
BseMI	GCAATG	2 cut(s)	1146, 1836
BseMII	CTCAG	6 cut(s)	192, 217, 888, 2284, 2351, 2523
BseNI	ACTGG	7 cut(s)	311, 1442, 1583, 1637, 1915, 2407, 2595
BseRI	GAGGAG	3 cut(s)	2000, 2315, 2531
BseXI	GCAGC	9 cut(s)	61, 207, 411, 938, 1484, 1926, 1929, 2458, 2564
BsgI	GTGCAG	1 cut(s)	867
Bsh1285I	CGRYCG	1 cut(s)	1248
BshFI	GGCC	6 cut(s)	200, 310, 426, 1463, 1691, 2080
BshTI	ACCGGT	1 cut(s)	30
BsiEI	CGRYCG	1 cut(s)	1248
BsiSI	CCGG	8 cut(s)	31, 63, 234, 360, 1188, 1248, 1464, 1571
BslFI	GGGAC	6 cut(s)	54, 275, 533, 659, 1030, 2503
BslI	CCNNNNNNNGG	8 cut(s)	156, 216, 317, 341, 433, 1483, 2167, 2535
BsmAI	GTCTC	4 cut(s)	12, 85, 2327, 2420
BsmBI	CGTCTC	2 cut(s)	12, 85
BsmFI	GGGAC	6 cut(s)	54, 275, 533, 659, 1030, 2503
BsmI	GAATGC	1 cut(s)	1838
BsnI	GGCC	6 cut(s)	200, 310, 426, 1463, 1691, 2080
Bso31I	GGTCTC	1 cut(s)	2327
Bsp13I	TCCGGA	1 cut(s)	1570
Bsp143I	GATC	9 cut(s)	129, 463, 901, 1387, 1543, 1573, 1642, 1849, 2175
BspANI	GGCC	6 cut(s)	200, 310, 426, 1463, 1691, 2080
BspCNI	CTCAG	6 cut(s)	191, 216, 887, 2283, 2350, 2524
BspEI	TCCGGA	1 cut(s)	1570
BspHI	TCATGA	2 cut(s)	301, 652
BspLI	GGNNCC	9 cut(s)	70, 263, 309, 521, 647, 748, 1537, 1771, 2593
BspMAI	CTGCAG	1 cut(s)	51
BspMI	ACCTGC	1 cut(s)	1169
BspPI	GGATC	4 cut(s)	458, 909, 1551, 1581
BspQI	GCTCTTC	1 cut(s)	230
BspTI	CTTAAG	1 cut(s)	1595
BspTNI	GGTCTC	1 cut(s)	2327
BsrDI	GCAATG	2 cut(s)	1146, 1836
BsrFI	RCCGGY	3 cut(s)	30, 233, 1463
BsrI	ACTGG	7 cut(s)	311, 1442, 1583, 1637, 1915, 2407, 2595
BssAI	RCCGGY	3 cut(s)	30, 233, 1463
BssECI	CCNNGG	5 cut(s)	814, 1300, 1539, 1875, 2161
BssMI	GATC	9 cut(s)	129, 463, 901, 1387, 1543, 1573, 1642, 1849, 2175
BssNI	GRCGYC	1 cut(s)	5
BssSI	CACGAG	1 cut(s)	1764
BssT1I	CCWWGG	2 cut(s)	1300, 1875
Bst2BI	CACGAG	1 cut(s)	1764
Bst2UI	CCWGG	2 cut(s)	977, 1541
Bst4CI	ACNGT	7 cut(s)	242, 571, 588, 676, 805, 815, 1267
Bst6I	CTCTTC	5 cut(s)	230, 458, 616, 2114, 2166
BstACI	GRCGYC	1 cut(s)	5
BstAFI	CTTAAG	1 cut(s)	1595
BstAPI	GCANNNNNTGC	2 cut(s)	405, 1296
BstBAI	YACGTR	2 cut(s)	1845, 2379
BstC8I	GCNNGC	7 cut(s)	38, 106, 284, 351, 493, 1905, 2078
BstDEI	CTNAG	6 cut(s)	178, 203, 874, 2270, 2337, 2532
BstDSI	CCRYGG	1 cut(s)	814
BstEII	GGTNACC	1 cut(s)	809
BstENI	CCTNNNNNAGG	1 cut(s)	2165
BstF5I	GGATG	9 cut(s)	83, 394, 457, 605, 734, 1151, 1420, 1821, 2265
BstHHI	GCGC	1 cut(s)	559
BstKTI	GATC	9 cut(s)	132, 466, 904, 1390, 1546, 1576, 1645, 1852, 2178
BstMAI	GTCTC	4 cut(s)	12, 85, 2327, 2420
BstMBI	GATC	9 cut(s)	129, 463, 901, 1387, 1543, 1573, 1642, 1849, 2175
BstMCI	CGRYCG	1 cut(s)	1248
BstNI	CCWGG	2 cut(s)	977, 1541
BstNSI	RCATGY	1 cut(s)	515
BstPI	GGTNACC	1 cut(s)	809
BstSCI	CCNGG	2 cut(s)	975, 1539
BstSFI	CTRYAG	2 cut(s)	47, 1623
BstSNI	TACGTA	1 cut(s)	1845
BstV1I	GCAGC	9 cut(s)	61, 207, 411, 938, 1484, 1926, 1929, 2458, 2564
BstV2I	GAAGAC	3 cut(s)	600, 677, 2251
BstX2I	RGATCY	1 cut(s)	1573
BstYI	RGATCY	1 cut(s)	1573
BsuRI	GGCC	6 cut(s)	200, 310, 426, 1463, 1691, 2080
BtgI	CCRYGG	1 cut(s)	814
BtgZI	GCGATG	3 cut(s)	85, 510, 1935
BtsCI	GGATG	9 cut(s)	83, 394, 457, 605, 734, 1151, 1420, 1821, 2265
BtsI	GCAGTG	1 cut(s)	1548
BtsIMutI	CAGTG	6 cut(s)	318, 584, 1263, 1449, 1548, 2102
BveI	ACCTGC	1 cut(s)	1169
Cac8I	GCNNGC	7 cut(s)	38, 106, 284, 351, 493, 1905, 2078
CaiI	CAGNNNCTG	2 cut(s)	1502, 1793
CciI	TCATGA	2 cut(s)	301, 652
CfoI	GCGC	1 cut(s)	559
Cfr10I	RCCGGY	3 cut(s)	30, 233, 1463
Cfr13I	GGNCC	7 cut(s)	68, 199, 262, 308, 520, 646, 1689
CseI	GACGC	2 cut(s)	556, 1027
Csp6I	GTAC	7 cut(s)	824, 1133, 1392, 1580, 1592, 1950, 2504
CspAI	ACCGGT	1 cut(s)	30
CspCI	CAANNNNNGTGG	2 cut(s)	1105, 1140
CviQI	GTAC	7 cut(s)	824, 1133, 1392, 1580, 1592, 1950, 2504
DdeI	CTNAG	6 cut(s)	178, 203, 874, 2270, 2337, 2532
DpnI	GATC	9 cut(s)	131, 465, 903, 1389, 1545, 1575, 1644, 1851, 2177
DpnII	GATC	9 cut(s)	129, 463, 901, 1387, 1543, 1573, 1642, 1849, 2175
DraI	TTTAAA	2 cut(s)	421, 2001
DraIII	CACNNNGTG	1 cut(s)	2245
DrdI	GACNNNNNNGTC	1 cut(s)	2407
DseDI	GACNNNNNNGTC	1 cut(s)	2407
Eam1104I	CTCTTC	5 cut(s)	230, 458, 616, 2114, 2166
EarI	CTCTTC	5 cut(s)	230, 458, 616, 2114, 2166
EciI	GGCGGA	1 cut(s)	220
Eco105I	TACGTA	1 cut(s)	1845
Eco130I	CCWWGG	2 cut(s)	1300, 1875
Eco147I	AGGCCT	1 cut(s)	2080
Eco31I	GGTCTC	1 cut(s)	2327
Eco47I	GGWCC	4 cut(s)	68, 262, 520, 646
Eco57I	CTGAAG	7 cut(s)	38, 612, 861, 876, 927, 1770, 2529
Eco91I	GGTNACC	1 cut(s)	809
EcoNI	CCTNNNNNAGG	1 cut(s)	2165
EcoO109I	RGGNCCY	3 cut(s)	262, 520, 646
EcoO65I	GGTNACC	1 cut(s)	809
EcoRI	GAATTC	1 cut(s)	835
EcoRII	CCWGG	2 cut(s)	975, 1539
EcoT14I	CCWWGG	2 cut(s)	1300, 1875
EcoT22I	ATGCAT	1 cut(s)	1838
ErhI	CCWWGG	2 cut(s)	1300, 1875
Esp3I	CGTCTC	2 cut(s)	12, 85
FalI	AAGNNNNNCTT	4 cut(s)	942, 974, 2139, 2171
FaqI	GGGAC	6 cut(s)	54, 275, 533, 659, 1030, 2503
FauNDI	CATATG	2 cut(s)	685, 1320
FbaI	TGATCA	2 cut(s)	1642, 1849
FblI	GTMKAC	1 cut(s)	161
FokI	GGATG	9 cut(s)	70, 401, 444, 612, 721, 1138, 1427, 1828, 2252
FspAI	RTGCGCAY	1 cut(s)	558
FspBI	CTAG	2 cut(s)	444, 2015
FspI	TGCGCA	1 cut(s)	558
GlaI	GCGC	1 cut(s)	558
GsuI	CTGGAG	2 cut(s)	1620, 2134
HaeIII	GGCC	6 cut(s)	200, 310, 426, 1463, 1691, 2080
HapII	CCGG	8 cut(s)	31, 63, 234, 360, 1188, 1248, 1464, 1571
HgaI	GACGC	2 cut(s)	556, 1027
HhaI	GCGC	1 cut(s)	559
Hin1I	GRCGYC	1 cut(s)	5
Hin6I	GCGC	1 cut(s)	557
HinP1I	GCGC	1 cut(s)	557
HindIII	AAGCTT	2 cut(s)	1971, 2087
HinfI	GANTC	7 cut(s)	119, 137, 154, 176, 1280, 1447, 2005
HpaII	CCGG	8 cut(s)	31, 63, 234, 360, 1188, 1248, 1464, 1571
HphI	GGTGA	5 cut(s)	323, 821, 913, 1679, 2398
Hpy166II	GTNNAC	2 cut(s)	162, 2389
Hpy8I	GTNNAC	2 cut(s)	162, 2389
Hpy99I	CGWCG	2 cut(s)	92, 550
HpyCH4III	ACNGT	7 cut(s)	242, 571, 588, 676, 805, 815, 1267
HpyCH4IV	ACGT	5 cut(s)	1733, 1844, 2378, 2492, 2502
HpyF3I	CTNAG	6 cut(s)	178, 203, 874, 2270, 2337, 2532
HpySE526I	ACGT	5 cut(s)	1733, 1844, 2378, 2492, 2502
Hsp92I	GRCGYC	1 cut(s)	5
HspAI	GCGC	1 cut(s)	557
Kpn2I	TCCGGA	1 cut(s)	1570
Ksp22I	TGATCA	2 cut(s)	1642, 1849
Kzo9I	GATC	9 cut(s)	129, 463, 901, 1387, 1543, 1573, 1642, 1849, 2175
LguI	GCTCTTC	1 cut(s)	230
LmnI	GCTCC	4 cut(s)	362, 1334, 1541, 2518
Lsp1109I	GCAGC	9 cut(s)	61, 207, 411, 938, 1484, 1926, 1929, 2458, 2564
LweI	GCATC	5 cut(s)	1160, 1760, 1912, 2023, 2451
MaeI	CTAG	2 cut(s)	444, 2015
MaeII	ACGT	5 cut(s)	1733, 1844, 2378, 2492, 2502
MaeIII	GTNAC	9 cut(s)	187, 236, 329, 571, 676, 809, 880, 964, 1052
MalI	GATC	9 cut(s)	131, 465, 903, 1389, 1545, 1575, 1644, 1851, 2177
MboI	GATC	9 cut(s)	129, 463, 901, 1387, 1543, 1573, 1642, 1849, 2175
MflI	RGATCY	1 cut(s)	1573
MlyI	GAGTC	1 cut(s)	170
MmeI	TCCRAC	3 cut(s)	111, 1864, 2300
Mph1103I	ATGCAT	1 cut(s)	1838
MroI	TCCGGA	1 cut(s)	1570
MroXI	GAANNNNTTC	4 cut(s)	1101, 1364, 1974, 2196
MslI	CAYNNNNRTG	1 cut(s)	1934
MspA1I	CMGCKG	3 cut(s)	617, 929, 2471
MspCI	CTTAAG	1 cut(s)	1595
MspI	CCGG	8 cut(s)	31, 63, 234, 360, 1188, 1248, 1464, 1571
MspR9I	CCNGG	2 cut(s)	977, 1541
Mva1269I	GAATGC	1 cut(s)	1838
MvaI	CCWGG	2 cut(s)	977, 1541
NdeI	CATATG	2 cut(s)	685, 1320
NdeII	GATC	9 cut(s)	129, 463, 901, 1387, 1543, 1573, 1642, 1849, 2175
NlaIV	GGNNCC	9 cut(s)	70, 263, 309, 521, 647, 748, 1537, 1771, 2593
NmeAIII	GCCGAG	1 cut(s)	2142
NmuCI	GTSAC	4 cut(s)	236, 329, 809, 964
NsbI	TGCGCA	1 cut(s)	558
NsiI	ATGCAT	1 cut(s)	1838
NspI	RCATGY	1 cut(s)	515
PagI	TCATGA	2 cut(s)	301, 652
PceI	AGGCCT	1 cut(s)	2080
PciSI	GCTCTTC	1 cut(s)	230
PcsI	WCGNNNNNNNCGW	2 cut(s)	149, 2555
PctI	GAATGC	1 cut(s)	1838
PdmI	GAANNNNTTC	4 cut(s)	1101, 1364, 1974, 2196
PfeI	GAWTC	6 cut(s)	119, 137, 154, 1280, 1447, 2005
PinAI	ACCGGT	1 cut(s)	30
PleI	GAGTC	1 cut(s)	170
PpsI	GAGTC	1 cut(s)	170
Ppu21I	YACGTR	2 cut(s)	1845, 2379
PpuMI	RGGWCCY	3 cut(s)	262, 520, 646
PshBI	ATTAAT	2 cut(s)	1491, 2286
PsiI	TTATAA	2 cut(s)	800, 1655
Psp5II	RGGWCCY	3 cut(s)	262, 520, 646
Psp6I	CCWGG	2 cut(s)	975, 1539
PspEI	GGTNACC	1 cut(s)	809
PspGI	CCWGG	2 cut(s)	975, 1539
PspN4I	GGNNCC	9 cut(s)	70, 263, 309, 521, 647, 748, 1537, 1771, 2593
PspPI	GGNCC	7 cut(s)	68, 199, 262, 308, 520, 646, 1689
PspPPI	RGGWCCY	3 cut(s)	262, 520, 646
PstI	CTGCAG	1 cut(s)	51
PstNI	CAGNNNCTG	2 cut(s)	1502, 1793
PsuI	RGATCY	1 cut(s)	1573
PvuII	CAGCTG	2 cut(s)	617, 929
RsaI	GTAC	7 cut(s)	825, 1134, 1393, 1581, 1593, 1951, 2505
RsaNI	GTAC	7 cut(s)	824, 1133, 1392, 1580, 1592, 1950, 2504
RseI	CAYNNNNRTG	1 cut(s)	1934
SapI	GCTCTTC	1 cut(s)	230
Sau3AI	GATC	9 cut(s)	129, 463, 901, 1387, 1543, 1573, 1642, 1849, 2175
Sau96I	GGNCC	7 cut(s)	68, 199, 262, 308, 520, 646, 1689
SchI	GAGTC	1 cut(s)	170
ScrFI	CCNGG	2 cut(s)	977, 1541
SfaNI	GCATC	5 cut(s)	1160, 1760, 1912, 2023, 2451
SfcI	CTRYAG	2 cut(s)	47, 1623
SinI	GGWCC	4 cut(s)	68, 262, 520, 646
SmiMI	CAYNNNNRTG	1 cut(s)	1934
SmlI	CTYRAG	2 cut(s)	1397, 1595
SmoI	CTYRAG	2 cut(s)	1397, 1595
SnaBI	TACGTA	1 cut(s)	1845
SseBI	AGGCCT	1 cut(s)	2080
SspMI	CTAG	2 cut(s)	444, 2015
StuI	AGGCCT	1 cut(s)	2080
StyD4I	CCNGG	2 cut(s)	975, 1539
StyI	CCWWGG	2 cut(s)	1300, 1875
TaaI	ACNGT	7 cut(s)	242, 571, 588, 676, 805, 815, 1267
TaiI	ACGT	5 cut(s)	1736, 1847, 2381, 2495, 2505
TaqI	TCGA	4 cut(s)	143, 152, 2200, 2582
TaqII	GACCGA	1 cut(s)	147
TatI	WGTACW	2 cut(s)	1591, 1949
TauI	GCSGC	2 cut(s)	117, 1536
TfiI	GAWTC	6 cut(s)	119, 137, 154, 1280, 1447, 2005
TscAI	CASTG	6 cut(s)	318, 591, 1270, 1449, 1555, 2102
TseFI	GTSAC	4 cut(s)	236, 329, 809, 964
TseI	GCWGC	9 cut(s)	49, 220, 399, 926, 1472, 1914, 1917, 2471, 2552
Tsp45I	GTSAC	4 cut(s)	236, 329, 809, 964
TspDTI	ATGAA	8 cut(s)	88, 129, 198, 641, 683, 1091, 1695, 1845
TspGWI	ACGGA	3 cut(s)	612, 841, 2581
TspRI	CASTG	6 cut(s)	318, 591, 1270, 1449, 1555, 2102
Vha464I	CTTAAG	1 cut(s)	1595
VpaK11BI	GGWCC	4 cut(s)	68, 262, 520, 646
VspI	ATTAAT	2 cut(s)	1491, 2286
XagI	CCTNNNNNAGG	1 cut(s)	2165
XapI	RAATTY	3 cut(s)	789, 835, 1025
XceI	RCATGY	1 cut(s)	515
XcmI	CCANNNNNNNNNTGG	1 cut(s)	130
XmiI	GTMKAC	1 cut(s)	161
XmnI	GAANNNNTTC	4 cut(s)	1101, 1364, 1974, 2196
XspI	CTAG	2 cut(s)	444, 2015
Zsp2I	ATGCAT	1 cut(s)	1838

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.