Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0010104

Physical Location & Seq

Genomic Coordinates Forward (+)

68388123 .. 68393553

Gene Structure 5431 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG471700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2445 bp

ATGGCGTCTCTACCTTTGAAGAAGAACTACCGGTGCGTCCCCTCTCTGCAACCGTTCTACTCCGGCGGCGCCTTTGCCGTCTCATCCGACGGTTCCTTCATCGCCTGCGCTTCCGGCGAGTCCATTAACATCGTCGATGCCTCCAACTCCTCTGTACGCTCCACTCTGGAAGGCGACTCCGAGGCCGTCACTGCTTTAACCCTCAGCCCCGACGACAAATTCCTCTTCTCGTCCGGTCACAGTCGCCTCATTAGGGTTTGGGACCTCTCCACCTTCAAATGCGTCCGCTCTTGGAAGGGTCATGATGGGCCTGTGATGGGAATGGCTTGTCACCCATCCGGGGGATATCTTGCCACCGCCGGAGCCGATAAGAAGGTTATAGTTTGGGATGTTGCCGGTAGCTTTGCCACTCATCACTTTAAAGGTCACCAAGGGGTTGTTTCTAGTCTTCTCTTTCATCCAGATCCTACTAAGCAAATTCTTTTCTCCGCAAGTCATGATACAACTGTGAACGTCTGGGATCTAGATACTAAGAAGCGTGTCGCAACACTTACTGAGCATAACTCAACGGTAACTTCTATGGCATTGTCCGAAGATGGGCGCACGTTGCTCACAGCTGGAAGAGATAAGGTTGTGATCTTGTGGAACCTTGATGACTACAACTGCTTGAAGACTGTAACAACATATGAAGCCCTTGAAGCTGTGTGTGTAATTCCTTCTGGAACTCTTTTATCTTCCCGTTTCGGTTCATCCAAGCAGCGGAATGGGAAGAAAAGCAAGTCACCTGCAATATGTTTTATAACAGTTGGTGACCGTGGGATCGTACGAATTTGGAATTCTGAAGGTGCAGTTTGCCTATTTGAGCAGAAGTCCTCAGATGTTACTATCACCTCTGATGACGATGAATCAAAAAGGGGCTTTACTGCAGCTTTACTGCTACCATCAGATCAAGGGCTGCTTTGTGTGACAGCTGATCAGGAGTTCCTTTTATATTCTCCTGTTGAAAGCCCCGAAGGGGCCTTTGAATTTGTTCTAAGCAAAAGACTTGTAGGAAATAATGGAGAGATTCTGGATATGAAATTTCTAGGTGATGAGGAACAATTTATCGCTGTCGCCACAAATACTGAACAGGTACGAGTGTTTGATGTTGCATCCATGTCATGTTCTCATGTATTGGCCGGTCATACTGAAATTGTTATGTGCCTTGACACCTGCGTATCAAGTTCCGGAAGAACACTTATAGTGACAGGAAGCAAGGATAATAGTGTTAGGTTGTGGGAATCAGAAAGCAGATGTTGCCTTGGTGTTGGCGTAGGTCACATGGGATCTGTTGGAGCTATTGCTTTCTCAAAGAAGCAGAGGGACTTCTTTGTCAGTGGTAGTAGTGATCATACCCTCAAGGTCTGGAGTTTGGATGGTATCTCAGACAATGTGGAAAAGCCAATAAATTTGAAAGCAAAAGCTGTTGTAGCAGCCCACGATAAGGATATCAATTCAGTAGCTGTTGCACCAAATGATAGTTTAGTTTGTAGTGGTTCACAGGACCGCACTGCTTGTGTTTGGAGGCTTCCAGATCTTGTACCAGTAGTTGTACTTAAGGGTCATAAAAGAGGGGTTTGGTCTGTAGAGTTTTCTCCAGTTGATCAATGCATTCTGACTACATCTGGTGATAAAACAATAAAGATATGGGCTATATCAGATGGCTCGTGCTTAAAATCATTTGAAGGACACATGTCAAGTGTATATCGAGCATCATTTCTTACTCGTGGGACCCAATTTATTTCTTCTGATGCTGATGGTTTGGTGAAGCTGTGGATGGTCAAAACAAATGAATGCATTGCTACATATGATCAGCATGAGGACAAGGTTTGGGCATTGACTGTTGGAAAGAAGACAGAAATGGTTGCAACTGGCAGCGGTGATGCTGCCATCAATCTGTGGTACGATTGTACTGCCTCTGATAAAGAGGAAGCTTTCCGCAGAGAGGAGGAAGGCGTCCTGAAAAGTCAAGAACTAGAAAATGCTGTCAAAGATGCTGACTATACTAAAGCAATCCAAATTGCATTTAAGCTTCGCAGGCCTCATAAACTTTATGAGTGTTTTCATGAACTTTTCAGGAAGAGAGGGGATGAAAAGCAGATAGAGAAAGCCCTTCATGACTTTGGCAACGAAGAGTTGGCGGTACTTTTTGAATATGTTAGGGAATGGAATACAAAGCCAAAGTTTTGCCATGTTGCCCAGTTCGTGTTCTTTAAAATTCTCAACATTTATAGTCCAACAGAGATTATTAAGGTGGTTGTCTTTACTTATTGTTGTGCTCTTTTTAAGGTTACATTAAAAAATAAAAGCACATTCAGATTTAAAAAAAGTGTAACTTGGATAATATTGTCCGTCTGTTACTTATTTGATCAAATTCATAGTTGGGTGAAGATTTTGCAACTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000462 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031974 GO:0031981 GO:0032040 GO:0032991 GO:0034388 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Utp13 WD40

Protein Analysis

814

Amino Acids

89.79

Weight (kDa)

6.44

Isoelectric Point (pI)

37.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_DCAF4	PF23761	25 - 131	1.8e-07	DDB1- and CUL4-associated factor 4 beta-propeller domain
WD40_WDHD1_1st	PF24817	25 - 100	2.9e-10	WDHD1 first WD40 domain
Beta-prop_WDR5	PF25175	26 - 156	1.1e-21	WDR5 beta-propeller domain
Beta-prop_WDR3_2nd	PF25172	26 - 130	1.7e-11	WDR3 second beta-propeller domain
Beta-prop_THOC3	PF25174	26 - 154	1.6e-19	THOC3 beta-propeller domain
WDR55	PF24796	27 - 131	3e-06	WDR55
WD40_MABP1-WDR62_1st	PF24780	29 - 128	3.1e-06	MABP1/WDR62 first WD40 domain
WD40_CDC20-Fz	PF24807	30 - 250	6.4e-27	CDC20/Fizzy WD40 domain
WD40_Prp19	PF24814	32 - 245	1.6e-37	Prp19 WD40 domain
Beta-prop_WDR3_1st	PF25173	33 - 217	1.1e-39	WDR3 first beta-propeller domain
Beta-prop_WDR36-Utp21_1st	PF25171	33 - 218	2.5e-15	WDR36/Utp21 first beta-propeller
WD40_Gbeta	PF25391	43 - 245	5.9e-20	G protein beta WD-40 repeat protein
Beta-prop_TEP1_2nd	PF25047	45 - 222	1.8e-17	TEP-1 second beta-propeller
WD40	PF00400	53 - 88	6.6e-06	WD domain, G-beta repeat
Beta-prop_WDR5	PF25175	55 - 239	2.5e-37	WDR5 beta-propeller domain
Beta-prop_EML_2	PF23414	64 - 203	1.3e-16	Echinoderm microtubule-associated protein second beta-propeller
WD40_MABP1-WDR62_2nd	PF24782	75 - 175	8.2e-11	MABP1/WDR62 second WD40 domain
Beta-prop_SCAP	PF24017	83 - 227	9.8e-08	SCAP Beta-propeller
Beta-prop_WDR3_2nd	PF25172	91 - 216	1e-17	WDR3 second beta-propeller domain
WD40	PF00400	93 - 130	3.6e-09	WD domain, G-beta repeat
Beta-prop_EML	PF23409	96 - 232	1.2e-09	Echinoderm microtubule-associated protein first beta-propeller
WDR55	PF24796	99 - 229	1e-11	WDR55
Beta-prop_WDR36-Utp21_2nd	PF25168	99 - 246	1.9e-15	WDR36/Utp21 second beta-propeller domain
WD40_WDHD1_1st	PF24817	104 - 184	3.8e-10	WDHD1 first WD40 domain
WD40_MABP1-WDR62_1st	PF24780	108 - 228	1.5e-09	MABP1/WDR62 first WD40 domain
Beta-prop_WDR90_POC16_2nd	PF23393	111 - 220	3.3e-11	WDR90/POC16, second beta-propeller
Beta-prop_WDR41	PF25178	117 - 219	1.7e-07	WDR41
Beta-prop_WDR3_1st	PF25173	138 - 244	2.2e-19	WDR3 first beta-propeller domain
WD40	PF00400	138 - 174	3.2e-06	WD domain, G-beta repeat
EIF3I	PF24805	141 - 387	4.6e-10	EIF3I
Beta-prop_Aladin	PF25460	143 - 244	6.7e-07	Aladin seven-bladed propeller
Beta-prop_IFT140_1st	PF23383	146 - 223	2.4e-06	IFT140 first beta-propeller
WD40_WDHD1_1st	PF24817	156 - 233	3.5e-10	WDHD1 first WD40 domain
WD40	PF00400	179 - 216	2.9e-07	WD domain, G-beta repeat
WD40_MABP1-WDR62_2nd	PF24782	256 - 606	5.9e-17	MABP1/WDR62 second WD40 domain
Beta-prop_WDR3_2nd	PF25172	263 - 522	1.5e-19	WDR3 second beta-propeller domain
Beta-prop_WDR5	PF25175	314 - 471	4.1e-19	WDR5 beta-propeller domain
WD40_Gbeta	PF25391	318 - 471	7e-09	G protein beta WD-40 repeat protein
Beta-prop_TEP1_2nd	PF25047	346 - 474	3.6e-07	TEP-1 second beta-propeller
Beta-prop_WDR3_1st	PF25173	351 - 472	7.4e-18	WDR3 first beta-propeller domain
Beta-prop_THOC3	PF25174	352 - 472	3.4e-15	THOC3 beta-propeller domain
WD40_CDC20-Fz	PF24807	353 - 475	5.4e-11	CDC20/Fizzy WD40 domain
WD40_Prp19	PF24814	354 - 472	1.3e-11	Prp19 WD40 domain
WD40_WDHD1_1st	PF24817	367 - 472	1.4e-08	WDHD1 first WD40 domain
WD40	PF00400	387 - 426	3.7e-07	WD domain, G-beta repeat
Beta-prop_TEP1_2nd	PF25047	414 - 611	2e-16	TEP-1 second beta-propeller
Beta-prop_WDR36-Utp21_2nd	PF25168	431 - 574	7e-07	WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR3_2nd	PF25172	440 - 648	1.8e-31	WDR3 second beta-propeller domain
Beta-prop_EML_2	PF23414	448 - 625	7.5e-14	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_THOC3	PF25174	453 - 578	1.1e-16	THOC3 beta-propeller domain
WD40_CDC20-Fz	PF24807	484 - 647	1.8e-22	CDC20/Fizzy WD40 domain
WD40_WDHD1_1st	PF24817	485 - 576	3.7e-12	WDHD1 first WD40 domain
Beta-prop_SCAP	PF24017	486 - 610	6e-09	SCAP Beta-propeller
WD40_Prp19	PF24814	486 - 647	5.5e-24	Prp19 WD40 domain
Beta-prop_CAF1B_HIR1	PF24105	488 - 570	1.4e-08	CAF1B/HIR1 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	488 - 647	1.4e-32	WDR3 first beta-propeller domain
WD40	PF00400	489 - 521	2.9e-06	WD domain, G-beta repeat
EIF3I	PF24805	490 - 593	9.1e-11	EIF3I
Beta-prop_WDR5	PF25175	491 - 649	1.7e-34	WDR5 beta-propeller domain
Beta-prop_WDR36-Utp21_2nd	PF25168	491 - 652	1.3e-07	WDR36/Utp21 second beta-propeller domain
Beta-prop_EML	PF23409	492 - 586	7.4e-08	Echinoderm microtubule-associated protein first beta-propeller
WDR55	PF24796	494 - 646	2.9e-14	WDR55
Beta-prop_EML	PF23409	514 - 657	2.4e-11	Echinoderm microtubule-associated protein first beta-propeller
WD40	PF00400	528 - 563	3.3e-08	WD domain, G-beta repeat
Beta-prop_WDR90_POC16_2nd	PF23393	548 - 655	8e-06	WDR90/POC16, second beta-propeller
WD40_Gbeta	PF25391	548 - 652	3e-13	G protein beta WD-40 repeat protein
Beta-prop_THOC3	PF25174	549 - 648	2.1e-15	THOC3 beta-propeller domain
EIF3I	PF24805	574 - 648	2.1e-08	EIF3I
Utp13	PF08625	670 - 766	1.6e-24	Utp13 specific WD40 associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0010104)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16750
fragaria_vesca	FvH4_7g34000 FvH4_7g34000
malus_domestica	MD01G1236400.v1.1 MD07G1309100.v1.1
prunus_persica	Prupe.2G326400_v2.0.a1 Prupe.2G326400_v2.0.a1
pyrus_communis	pycom01g24430 pycom07g28110
rosa_chinensis	RchiOBHm_Chr1g0384251
rosa_laevigata	RLG00000026054
rosa_multiflora	Rmu_sc0011271.1_g000002
rosa_roxburghii	Rroxscaffold_4G00276810
rosa_rugosa	Rorug01G0446100 Rorug01G0446200 Rorug01G0446200
rosa_samantha	Rh1AG471700 Rh1BG429400 Rh1CG442000 Rh1DG462100
rosa_wichuraiana	Rw1G040090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	800
AarI	CACCTGC	2 cut(s)	793, 1220
AasI	GACNNNNNNGTC	1 cut(s)	1370
Acc36I	ACCTGC	2 cut(s)	793, 1220
AccB1I	GGYRCC	1 cut(s)	68
AccBSI	CCGCTC	1 cut(s)	288
AccIII	TCCGGA	1 cut(s)	1226
AciI	CCGC	9 cut(s)	66, 286, 357, 489, 760, 1546, 1917, 1978, 2180
AclWI	GGATC	4 cut(s)	458, 528, 827, 1333
AcoI	YGGCCR	1 cut(s)	1176
AcsI	RAATTY	9 cut(s)	218, 477, 828, 835, 1025, 1079, 1447, 2256, 2412
AcuI	CTGAAG	1 cut(s)	861
AcyI	GRCGYC	3 cut(s)	5, 69, 1995
AfaI	GTAC	8 cut(s)	156, 825, 1134, 1581, 1593, 1943, 1951, 2184
AfiI	CCNNNNNNNGG	9 cut(s)	253, 317, 340, 341, 597, 759, 1015, 1483, 1984
AflII	CTTAAG	1 cut(s)	1595
AflIII	ACRYGT	1 cut(s)	1731
AgeI	ACCGGT	1 cut(s)	30
AgsI	TTSAA	9 cut(s)	19, 277, 670, 698, 1004, 1025, 1453, 1724, 2192
Alw21I	GWGCWC	1 cut(s)	2320
Alw26I	GTCTC	2 cut(s)	12, 85
AlwI	GGATC	4 cut(s)	458, 528, 827, 1333
AlwNI	CAGNNNCTG	1 cut(s)	1502
Aor13HI	TCCGGA	1 cut(s)	1226
AoxI	GGCC	5 cut(s)	183, 308, 1017, 1176, 2078
ApeKI	GCWGC	6 cut(s)	757, 926, 955, 1472, 1914, 1925
ApoI	RAATTY	9 cut(s)	218, 477, 828, 835, 1025, 1079, 1447, 2256, 2412
AsiGI	ACCGGT	1 cut(s)	30
Asp700I	GAANNNNTTC	1 cut(s)	1029
AspLEI	GCGC	3 cut(s)	71, 110, 603
AspS9I	GGNCC	5 cut(s)	262, 308, 1017, 1543, 1770
AsuC2I	CCSGG	1 cut(s)	340
AvaII	GGWCC	3 cut(s)	262, 1543, 1770
BaeI	ACNNNNGTAYC	8 cut(s)	492, 525, 1124, 1157, 1200, 1233, 1933, 1966
BanI	GGYRCC	1 cut(s)	68
BarI	GAAGNNNNNNTAC	2 cut(s)	11, 43
BauI	CACGAG	2 cut(s)	1705, 1764
BbsI	GAAGAC	3 cut(s)	440, 677, 1898
Bbv12I	GWGCWC	1 cut(s)	2320
BbvCI	CCTCAGC	1 cut(s)	203
BbvI	GCAGC	6 cut(s)	769, 938, 942, 1484, 1912, 1926
BceAI	ACGGC	2 cut(s)	62, 170
BcgI	CGANNNNNNTGC	2 cut(s)	1934, 1968
BclI	TGATCA	5 cut(s)	973, 1387, 1642, 1849, 2407
BcnI	CCSGG	1 cut(s)	340
BcoDI	GTCTC	2 cut(s)	12, 85
BfaI	CTAG	4 cut(s)	444, 524, 1085, 2015
BfmI	CTRYAG	2 cut(s)	924, 1623
BfoI	RGCGCY	1 cut(s)	72
BfrI	CTTAAG	1 cut(s)	1595
BfuAI	ACCTGC	2 cut(s)	793, 1220
BglII	AGATCT	1 cut(s)	1573
BisI	GCNGC	7 cut(s)	67, 758, 927, 956, 1473, 1915, 1926
BlsI	GCNGC	7 cut(s)	68, 759, 928, 957, 1474, 1916, 1927
Bme1390I	CCNGG	1 cut(s)	340
Bme18I	GGWCC	3 cut(s)	262, 1543, 1770
BmgT120I	GGNCC	5 cut(s)	262, 308, 1017, 1543, 1770
BmiI	GGNNCC	8 cut(s)	70, 94, 263, 364, 647, 1018, 1771, 1772
BmrFI	CCNGG	1 cut(s)	340
BmrI	ACTGGG	1 cut(s)	2233
BmsI	GCATC	6 cut(s)	127, 1160, 1760, 1780, 1912, 2023
BmuI	ACTGGG	1 cut(s)	2233
BoxI	GACNNNNGTC	1 cut(s)	1732
BpiI	GAAGAC	3 cut(s)	440, 677, 1898
BplI	GAGNNNNNCTC	2 cut(s)	548, 580
BpmI	CTGGAG	2 cut(s)	1426, 1620
Bpu10I	CCTNAGC	1 cut(s)	203
BpuEI	CTTGAG	1 cut(s)	1382
BpuMI	CCSGG	1 cut(s)	340
BsaHI	GRCGYC	3 cut(s)	5, 69, 1995
BsaJI	CCNNGG	5 cut(s)	180, 339, 430, 814, 1300
BsaWI	WCCGGW	3 cut(s)	30, 233, 1226
Bsc4I	CCNNNNNNNGG	9 cut(s)	253, 317, 340, 341, 597, 759, 1015, 1483, 1984
Bse118I	RCCGGY	3 cut(s)	30, 395, 1178
Bse1I	ACTGG	4 cut(s)	1583, 1637, 1915, 2239
Bse3DI	GCAATG	1 cut(s)	1836
BseAI	TCCGGA	1 cut(s)	1226
BseDI	CCNNGG	5 cut(s)	180, 339, 430, 814, 1300
BseGI	GGATG	9 cut(s)	83, 335, 394, 457, 749, 1151, 1420, 1821, 2134
BseLI	CCNNNNNNNGG	9 cut(s)	253, 317, 340, 341, 597, 759, 1015, 1483, 1984
BseMI	GCAATG	1 cut(s)	1836
BseMII	CTCAG	4 cut(s)	217, 546, 888, 1437
BseNI	ACTGG	4 cut(s)	1583, 1637, 1915, 2239
BseRI	GAGGAG	2 cut(s)	139, 2000
BseXI	GCAGC	6 cut(s)	769, 938, 942, 1484, 1912, 1926
BsgI	GTGCAG	1 cut(s)	867
BshFI	GGCC	5 cut(s)	185, 310, 1019, 1178, 2080
BshNI	GGYRCC	1 cut(s)	68
BshTI	ACCGGT	1 cut(s)	30
BsiHKAI	GWGCWC	1 cut(s)	2320
BsiSI	CCGG	9 cut(s)	31, 63, 114, 234, 339, 360, 396, 1179, 1227
BsiWI	CGTACG	1 cut(s)	823
BslFI	GGGAC	4 cut(s)	23, 275, 1376, 1783
BslI	CCNNNNNNNGG	9 cut(s)	253, 317, 340, 341, 597, 759, 1015, 1483, 1984
BsmAI	GTCTC	2 cut(s)	12, 85
BsmBI	CGTCTC	2 cut(s)	12, 85
BsmFI	GGGAC	4 cut(s)	23, 275, 1376, 1783
BsmI	GAATGC	2 cut(s)	1650, 1838
BsnI	GGCC	5 cut(s)	185, 310, 1019, 1178, 2080
Bsp1286I	GDGCHC	1 cut(s)	2320
Bsp13I	TCCGGA	1 cut(s)	1226
BspACI	CCGC	9 cut(s)	66, 286, 357, 489, 760, 1546, 1917, 1978, 2180
BspANI	GGCC	5 cut(s)	185, 310, 1019, 1178, 2080
BspCNI	CTCAG	4 cut(s)	216, 547, 887, 1436
BspEI	TCCGGA	1 cut(s)	1226
BspHI	TCATGA	4 cut(s)	301, 496, 2104, 2155
BspLI	GGNNCC	8 cut(s)	70, 94, 263, 364, 647, 1018, 1771, 1772
BspMAI	CTGCAG	1 cut(s)	928
BspMI	ACCTGC	2 cut(s)	793, 1220
BspPI	GGATC	4 cut(s)	458, 528, 827, 1333
BspT107I	GGYRCC	1 cut(s)	68
BspTI	CTTAAG	1 cut(s)	1595
BsrBI	CCGCTC	1 cut(s)	288
BsrDI	GCAATG	1 cut(s)	1836
BsrFI	RCCGGY	3 cut(s)	30, 395, 1178
BsrI	ACTGG	4 cut(s)	1583, 1637, 1915, 2239
BssAI	RCCGGY	3 cut(s)	30, 395, 1178
BssECI	CCNNGG	5 cut(s)	180, 339, 430, 814, 1300
BssNI	GRCGYC	3 cut(s)	5, 69, 1995
BssSI	CACGAG	2 cut(s)	1705, 1764
BssT1I	CCWWGG	2 cut(s)	430, 1300
Bst2BI	CACGAG	2 cut(s)	1705, 1764
Bst4CI	ACNGT	9 cut(s)	54, 92, 242, 508, 571, 676, 805, 815, 1882
Bst6I	CTCTTC	4 cut(s)	230, 616, 2114, 2166
BstACI	GRCGYC	3 cut(s)	5, 69, 1995
BstAFI	CTTAAG	1 cut(s)	1595
BstAPI	GCANNNNNTGC	1 cut(s)	1296
BstC8I	GCNNGC	2 cut(s)	106, 2078
BstDEI	CTNAG	7 cut(s)	203, 471, 531, 555, 874, 1034, 1423
BstDSI	CCRYGG	1 cut(s)	814
BstEII	GGTNACC	2 cut(s)	425, 809
BstF5I	GGATG	9 cut(s)	83, 335, 394, 457, 749, 1151, 1420, 1821, 2134
BstH2I	RGCGCY	1 cut(s)	72
BstHHI	GCGC	3 cut(s)	71, 110, 603
BstMAI	GTCTC	2 cut(s)	12, 85
BstMWI	GCNNNNNNNGC	7 cut(s)	114, 191, 607, 698, 1296, 1469, 2077
BstNSI	RCATGY	1 cut(s)	1735
BstPAI	GACNNNNGTC	1 cut(s)	1732
BstPI	GGTNACC	2 cut(s)	425, 809
BstSCI	CCNGG	1 cut(s)	338
BstSFI	CTRYAG	2 cut(s)	924, 1623
BstV1I	GCAGC	6 cut(s)	769, 938, 942, 1484, 1912, 1926
BstV2I	GAAGAC	3 cut(s)	440, 677, 1898
BstX2I	RGATCY	4 cut(s)	463, 520, 1325, 1573
BstYI	RGATCY	4 cut(s)	463, 520, 1325, 1573
BsuRI	GGCC	5 cut(s)	185, 310, 1019, 1178, 2080
BtgI	CCRYGG	1 cut(s)	814
BtgZI	GCGATG	1 cut(s)	85
BtsCI	GGATG	9 cut(s)	83, 335, 394, 457, 749, 1151, 1420, 1821, 2134
BtsI	GCAGTG	2 cut(s)	189, 1548
BtsIMutI	CAGTG	3 cut(s)	189, 1381, 1548
BveI	ACCTGC	2 cut(s)	793, 1220
Cac8I	GCNNGC	2 cut(s)	106, 2078
CaiI	CAGNNNCTG	1 cut(s)	1502
CciI	TCATGA	4 cut(s)	301, 496, 2104, 2155
CfoI	GCGC	3 cut(s)	71, 110, 603
Cfr10I	RCCGGY	3 cut(s)	30, 395, 1178
Cfr13I	GGNCC	5 cut(s)	262, 308, 1017, 1543, 1770
CseI	GACGC	3 cut(s)	25, 271, 1984
Csp6I	GTAC	8 cut(s)	155, 824, 1133, 1580, 1592, 1942, 1950, 2183
CspAI	ACCGGT	1 cut(s)	30
CviQI	GTAC	8 cut(s)	155, 824, 1133, 1580, 1592, 1942, 1950, 2183
DdeI	CTNAG	7 cut(s)	203, 471, 531, 555, 874, 1034, 1423
DinI	GGCGCC	1 cut(s)	70
DraI	TTTAAA	3 cut(s)	421, 2254, 2362
DrdI	GACNNNNNNGTC	1 cut(s)	1370
DseDI	GACNNNNNNGTC	1 cut(s)	1370
EaeI	YGGCCR	1 cut(s)	1176
Eam1104I	CTCTTC	4 cut(s)	230, 616, 2114, 2166
EarI	CTCTTC	4 cut(s)	230, 616, 2114, 2166
Eco130I	CCWWGG	2 cut(s)	430, 1300
Eco147I	AGGCCT	1 cut(s)	2080
Eco32I	GATATC	2 cut(s)	347, 1489
Eco47I	GGWCC	3 cut(s)	262, 1543, 1770
Eco57I	CTGAAG	1 cut(s)	861
Eco91I	GGTNACC	2 cut(s)	425, 809
EcoO109I	RGGNCCY	3 cut(s)	262, 1017, 1770
EcoO65I	GGTNACC	2 cut(s)	425, 809
EcoRI	GAATTC	1 cut(s)	835
EcoRV	GATATC	2 cut(s)	347, 1489
EcoT14I	CCWWGG	2 cut(s)	430, 1300
EcoT22I	ATGCAT	2 cut(s)	1652, 1838
EgeI	GGCGCC	1 cut(s)	70
EheI	GGCGCC	1 cut(s)	70
ErhI	CCWWGG	2 cut(s)	430, 1300
Esp3I	CGTCTC	2 cut(s)	12, 85
FalI	AAGNNNNNCTT	4 cut(s)	942, 974, 2359, 2391
FaqI	GGGAC	4 cut(s)	23, 275, 1376, 1783
FauNDI	CATATG	2 cut(s)	685, 1846
FbaI	TGATCA	5 cut(s)	973, 1387, 1642, 1849, 2407
Fnu4HI	GCNGC	7 cut(s)	67, 758, 927, 956, 1473, 1915, 1926
FokI	GGATG	9 cut(s)	70, 322, 401, 444, 736, 1138, 1427, 1828, 2141
Fsp4HI	GCNGC	7 cut(s)	67, 758, 927, 956, 1473, 1915, 1926
FspBI	CTAG	4 cut(s)	444, 524, 1085, 2015
GlaI	GCGC	3 cut(s)	70, 109, 602
GluI	GCNGC	7 cut(s)	67, 758, 927, 956, 1473, 1915, 1926
GsuI	CTGGAG	2 cut(s)	1426, 1620
HaeII	RGCGCY	1 cut(s)	72
HaeIII	GGCC	5 cut(s)	185, 310, 1019, 1178, 2080
HapII	CCGG	9 cut(s)	31, 63, 114, 234, 339, 360, 396, 1179, 1227
HgaI	GACGC	3 cut(s)	25, 271, 1984
HhaI	GCGC	3 cut(s)	71, 110, 603
Hin1I	GRCGYC	3 cut(s)	5, 69, 1995
Hin6I	GCGC	3 cut(s)	69, 108, 601
HinP1I	GCGC	3 cut(s)	69, 108, 601
HindIII	AAGCTT	2 cut(s)	1971, 2069
HinfI	GANTC	5 cut(s)	119, 176, 905, 1066, 1280
HpaII	CCGG	9 cut(s)	31, 63, 114, 234, 339, 360, 396, 1179, 1227
Hpy166II	GTNNAC	2 cut(s)	511, 1538
Hpy8I	GTNNAC	2 cut(s)	511, 1538
Hpy99I	CGWCG	3 cut(s)	92, 137, 215
HpyCH4III	ACNGT	9 cut(s)	54, 92, 242, 508, 571, 676, 805, 815, 1882
HpyCH4IV	ACGT	2 cut(s)	513, 605
HpyF10VI	GCNNNNNNNGC	7 cut(s)	114, 191, 607, 698, 1296, 1469, 2077
HpyF3I	CTNAG	7 cut(s)	203, 471, 531, 555, 874, 1034, 1423
HpySE526I	ACGT	2 cut(s)	513, 605
Hsp92I	GRCGYC	3 cut(s)	5, 69, 1995
HspAI	GCGC	3 cut(s)	69, 108, 601
KasI	GGCGCC	1 cut(s)	68
KflI	GGGWCCC	1 cut(s)	1770
Kpn2I	TCCGGA	1 cut(s)	1226
Ksp22I	TGATCA	5 cut(s)	973, 1387, 1642, 1849, 2407
LmnI	GCTCC	3 cut(s)	164, 362, 1334
Lsp1109I	GCAGC	6 cut(s)	769, 938, 942, 1484, 1912, 1926
LweI	GCATC	6 cut(s)	127, 1160, 1760, 1780, 1912, 2023
MaeI	CTAG	4 cut(s)	444, 524, 1085, 2015
MaeII	ACGT	2 cut(s)	513, 605
MbiI	CCGCTC	1 cut(s)	288
MflI	RGATCY	4 cut(s)	463, 520, 1325, 1573
MhlI	GDGCHC	1 cut(s)	2320
Mly113I	GGCGCC	1 cut(s)	69
MlyI	GAGTC	2 cut(s)	128, 170
MmeI	TCCRAC	5 cut(s)	111, 168, 1312, 1864, 2300
Mph1103I	ATGCAT	2 cut(s)	1652, 1838
MroI	TCCGGA	1 cut(s)	1226
MroXI	GAANNNNTTC	1 cut(s)	1029
MspA1I	CMGCKG	4 cut(s)	617, 760, 971, 1917
MspCI	CTTAAG	1 cut(s)	1595
MspI	CCGG	9 cut(s)	31, 63, 114, 234, 339, 360, 396, 1179, 1227
MspR9I	CCNGG	1 cut(s)	340
Mva1269I	GAATGC	2 cut(s)	1650, 1838
MwoI	GCNNNNNNNGC	7 cut(s)	114, 191, 607, 698, 1296, 1469, 2077
NarI	GGCGCC	1 cut(s)	69
NciI	CCSGG	1 cut(s)	340
NdeI	CATATG	2 cut(s)	685, 1846
NlaIV	GGNNCC	8 cut(s)	70, 94, 263, 364, 647, 1018, 1771, 1772
NmuCI	GTSAC	9 cut(s)	187, 236, 329, 425, 780, 809, 964, 1243, 1316
NsiI	ATGCAT	2 cut(s)	1652, 1838
NspI	RCATGY	1 cut(s)	1735
PagI	TCATGA	4 cut(s)	301, 496, 2104, 2155
PaqCI	CACCTGC	2 cut(s)	793, 1220
PceI	AGGCCT	1 cut(s)	2080
PciI	ACATGT	1 cut(s)	1731
PctI	GAATGC	2 cut(s)	1650, 1838
PdmI	GAANNNNTTC	1 cut(s)	1029
PfeI	GAWTC	3 cut(s)	905, 1066, 1280
Pfl23II	CGTACG	1 cut(s)	823
PinAI	ACCGGT	1 cut(s)	30
PkrI	GCNGC	7 cut(s)	68, 759, 928, 957, 1474, 1916, 1927
PleI	GAGTC	2 cut(s)	127, 170
PluTI	GGCGCC	1 cut(s)	72
PpsI	GAGTC	2 cut(s)	127, 170
PpuMI	RGGWCCY	2 cut(s)	262, 1770
PscI	ACATGT	1 cut(s)	1731
PshAI	GACNNNNGTC	1 cut(s)	1732
PsiI	TTATAA	1 cut(s)	800
Psp5II	RGGWCCY	2 cut(s)	262, 1770
PspEI	GGTNACC	2 cut(s)	425, 809
PspLI	CGTACG	1 cut(s)	823
PspN4I	GGNNCC	8 cut(s)	70, 94, 263, 364, 647, 1018, 1771, 1772
PspPI	GGNCC	5 cut(s)	262, 308, 1017, 1543, 1770
PspPPI	RGGWCCY	2 cut(s)	262, 1770
PstI	CTGCAG	1 cut(s)	928
PstNI	CAGNNNCTG	1 cut(s)	1502
PsuI	RGATCY	4 cut(s)	463, 520, 1325, 1573
PvuII	CAGCTG	2 cut(s)	617, 971
RsaI	GTAC	8 cut(s)	156, 825, 1134, 1581, 1593, 1943, 1951, 2184
RsaNI	GTAC	8 cut(s)	155, 824, 1133, 1580, 1592, 1942, 1950, 2183
SatI	GCNGC	7 cut(s)	67, 758, 927, 956, 1473, 1915, 1926
Sau96I	GGNCC	5 cut(s)	262, 308, 1017, 1543, 1770
SchI	GAGTC	2 cut(s)	128, 170
ScrFI	CCNGG	1 cut(s)	340
SduI	GDGCHC	1 cut(s)	2320
SfaNI	GCATC	6 cut(s)	127, 1160, 1760, 1780, 1912, 2023
SfcI	CTRYAG	2 cut(s)	924, 1623
SfoI	GGCGCC	1 cut(s)	70
SinI	GGWCC	3 cut(s)	262, 1543, 1770
SmlI	CTYRAG	2 cut(s)	1397, 1595
SmoI	CTYRAG	2 cut(s)	1397, 1595
SseBI	AGGCCT	1 cut(s)	2080
SsiI	CCGC	9 cut(s)	66, 286, 357, 489, 760, 1546, 1917, 1978, 2180
SspDI	GGCGCC	1 cut(s)	68
SspI	AATATT	1 cut(s)	2385
SspMI	CTAG	4 cut(s)	444, 524, 1085, 2015
StuI	AGGCCT	1 cut(s)	2080
StyD4I	CCNGG	1 cut(s)	338
StyI	CCWWGG	2 cut(s)	430, 1300
TaaI	ACNGT	9 cut(s)	54, 92, 242, 508, 571, 676, 805, 815, 1882
TaiI	ACGT	2 cut(s)	516, 608
TaqI	TCGA	2 cut(s)	135, 1747
TatI	WGTACW	2 cut(s)	1591, 1949
TauI	GCSGC	1 cut(s)	69
TfiI	GAWTC	3 cut(s)	905, 1066, 1280
TscAI	CASTG	3 cut(s)	196, 1381, 1555
TseFI	GTSAC	9 cut(s)	187, 236, 329, 425, 780, 809, 964, 1243, 1316
TseI	GCWGC	6 cut(s)	757, 926, 955, 1472, 1914, 1925
Tsp45I	GTSAC	9 cut(s)	187, 236, 329, 425, 780, 809, 964, 1243, 1316
TspGWI	ACGGA	1 cut(s)	2380
TspRI	CASTG	3 cut(s)	196, 1381, 1555
Vha464I	CTTAAG	1 cut(s)	1595
VpaK11BI	GGWCC	3 cut(s)	262, 1543, 1770
XapI	RAATTY	9 cut(s)	218, 477, 828, 835, 1025, 1079, 1447, 2256, 2412
XbaI	TCTAGA	1 cut(s)	523
XceI	RCATGY	1 cut(s)	1735
XmnI	GAANNNNTTC	1 cut(s)	1029
XspI	CTAG	4 cut(s)	444, 524, 1085, 2015
Zsp2I	ATGCAT	2 cut(s)	1652, 1838

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.