Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0010104

Physical Location & Seq

Genomic Coordinates Reverse (-)

290774 .. 298464

Gene Structure 7691 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00276810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2388 bp

ATGGCGTCTCTACCTTTGAAGAAGAACTACCGGTGCGTCCCCTCTCTGCAACCGTTCTACTCCGGCGGCGCCTTTGCCGTGTCATCCGACGGTTCCTTCATCGCCTGCGCCTCCGGCGAGTCCATTAACATCGTCGATGCCTCCAACTCCTCTGTACGCTCCACTCTGGAAGGCGACTCCGAGGCCGTCACTGCTTTAACCCTCAGCCCCGACGACAAGTTGCTCTTCTCGTCCGGCCACAGTCGCCTCATTAGGGTTTGGGACCTCTCCACCTTCAAATGCGTCCGCTCTTGGAAGGGTCATGATGGGCCTGTGATGGGAATGGCTTGTCACCCATCTGGGGGATATCTTGCCACCGCCGGAGCCGATAAGAAGGTTATAGTTTGGGATGTTGCCGGTAGCTTTGCCACTCATCACTTTAAAGGTCACCAAGGGGTTGTTTCTAGTCTTCTCTTTCATCCAGATCCTACTAAGCAAATTCTTTTCTCCGCAAGTCATGATACAACTGTGAACGTCTGGGATCTAGATACTAAGAAGCGTGTCGCGACACTTACTGGGCATAACTCAACCGTTGTGATCTTGTGGAACCTTGATGACTACAACTGCTTGAAGACTGTAACAATATATGAAGCCCTTGAAGCTGTGTGTGTAATTCCTTCTGGAACTCTTTTATCTTCCCGTTTCGGTTCATCCAAGCAGCCGAATGGGAAGAAAAGCAAGTCACCTGCAATATGTTTTATAACAGTTGGTGACCGTGGGATCGTACGAATTTGGAATTCTGAAGGGGGCTTTACTGCAGCTTTACTGCTACCATCAGATCAAGGGCTGCTTTGTGTGACAGCTGATCAGGAGTTCCTTTTATATTCTCCTGTTGAAAGCCCTGAAGGGACCTTTGAATTTGTTCTAAGCAAAAGACTTGTAGGAAATAATGGAGAGATTCTGGATATGAAATTTCTAGGTGATGAGGAACAATTTATCGCTGTCGCCACAAATACTGAACAGGTACGAGTGTTTGATGTTGCATCCATGTCATGTTCTCATGTATTGGCCGGTCATACTGAAATTGTTATGTGCCTTGACACCTGCGTATCAAGTTCCGGAAGAACACTTATAGTGACAGGAAGCAAGGATAATAGTGTTAGGTTGTGGGAATCAGAAAGCAGATGTTGCCTTGGTGTTGGCGTAGGTCACATGGGATCTGTTGGAGCTATTGCTTTCTCAAAGAAGCAGAGGGACTTCTTTGTCAGTGGTAGTAGTGATCATACCCTCAAGGTCTGGAGTTTGGATGGTATCTCAGAAAATGTGGAAAAGCCAATAAATTTGAAAGCAAAAGCTGTTGTAGCAGCCCACGATAAGGATATCAATTCAGTAGCTGTTGCACCAAATGATAGTTTAGTTTGTAGTGGCTCACAGGACCGCACTGCTTGTGTTTGGAGGCTTCCAGATCTTGTACCAGTAGTTGTACTTAAGGGTCATAAAAGAGGGGTTTGGTCTGTAGAGTTTTCTCCAGTTGATCAATGCATTCTGACTACATCTGGTGATAAAACAATAAAGATATGGGCTATATCAGATGGCTCGTGCTTAAAATCATTTGAAGGACATATGTCAAGTGTATATCGAGCATCATTTCTTACTCGTGGGACCCAATTTATTTCTTCTGATGCTGATGGTTTGGTGAAGCTGTGGATGGTCAAAACAAATGAATGCATTGCTACATATGATCAGCATGAGGACAAGGTTTGGGCATTGACTGTTGGAAAGAAGACAGAAATGGTTGCAACTGGCAGCGGTGATGCTGCCATCAATCTGTGGTATGATTGTACTGCCTCTGATAAAGAGGAAGCTTTCCGCAGAGAGGAGGAAGGCGTCCTGAAAAGTCAAGAACTAGAAAATGCTGTCAAAGACGCTGACTATACTAAAGCAATCCAAATTGCATTTAAGCTTCGCAGGCCTCATAAACTTTATGAGTGTTTTCATGAACTTTTCAGGAAGAGAGGGGATGAAAAGCAGATAGAGAATGCCCTTCATGACTTTGGCAACGAAGAGTTGGCGGTAAAAGGCATTCAGAATCTTCTTGAAGCTCTCACCCCATATTCTCAGAGGCACTATAGCAGAGTAGACAGGCACGTGAGAAACACACTCCTGTTGGACTTCATTCTGCACTCGATGGCTGTTGTTGAACCAGATACAGGTGCTAGAGAATTGAATGAAGAGTCTTTGATTCCCTCTGATGTCAATCATGGGAATGAAACACGTAGTATGGAGGAGGATCAGGAACAGAAGCAGACATCTGAAGGGTTGAAGGAAAAGGCAGCCTCGAGGAAACGGAAGTCGAAGAAATCAAGAGATGGTTCAAAGAAGAAAGCTAAAGCGTCCAGCTTAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000462 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031974 GO:0031981 GO:0032040 GO:0032991 GO:0034388 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Utp13 WD40

Protein Analysis

795

Amino Acids

87.1

Weight (kDa)

6.27

Isoelectric Point (pI)

40.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_DCAF4	PF23761	25 - 131	3.3e-07	DDB1- and CUL4-associated factor 4 beta-propeller domain
WD40_WDHD1_1st	PF24817	25 - 100	9.6e-10	WDHD1 first WD40 domain
Beta-prop_WDR5	PF25175	26 - 190	3.9e-29	WDR5 beta-propeller domain
Beta-prop_WDR3_2nd	PF25172	26 - 130	1.5e-11	WDR3 second beta-propeller domain
WDR55	PF24796	27 - 131	1.9e-06	WDR55
Beta-prop_WDR36-Utp21_2nd	PF25168	28 - 123	6.5e-08	WDR36/Utp21 second beta-propeller domain
WD40_CDC20-Fz	PF24807	28 - 197	6.1e-21	CDC20/Fizzy WD40 domain
WD40_MABP1-WDR62_1st	PF24780	29 - 130	2.4e-06	MABP1/WDR62 first WD40 domain
WD40_Prp19	PF24814	32 - 191	2.4e-25	Prp19 WD40 domain
Beta-prop_WDR36-Utp21_1st	PF25171	33 - 192	2.7e-11	WDR36/Utp21 first beta-propeller
Beta-prop_WDR3_1st	PF25173	33 - 203	1.1e-33	WDR3 first beta-propeller domain
WD40_Gbeta	PF25391	42 - 192	1.9e-11	G protein beta WD-40 repeat protein
Beta-prop_TEP1_2nd	PF25047	45 - 199	5.9e-15	TEP-1 second beta-propeller
EIF3I	PF24805	56 - 132	7e-06	EIF3I
WD40_MABP1-WDR62_2nd	PF24782	76 - 175	9.1e-11	MABP1/WDR62 second WD40 domain
WD40	PF00400	93 - 130	3.5e-09	WD domain, G-beta repeat
Beta-prop_EML	PF23409	96 - 193	4.3e-06	Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_WDR36-Utp21_2nd	PF25168	104 - 185	2.8e-07	WDR36/Utp21 second beta-propeller domain
WD40_WDHD1_1st	PF24817	104 - 188	9.4e-11	WDHD1 first WD40 domain
WD40_MABP1-WDR62_1st	PF24780	107 - 258	8.5e-06	MABP1/WDR62 first WD40 domain
Beta-prop_THOC3	PF25174	112 - 198	2.6e-16	THOC3 beta-propeller domain
WD40	PF00400	138 - 174	3.1e-06	WD domain, G-beta repeat
Beta-prop_WDR3_2nd	PF25172	192 - 479	5.8e-19	WDR3 second beta-propeller domain
WD40_MABP1-WDR62_2nd	PF24782	234 - 563	2.7e-18	MABP1/WDR62 second WD40 domain
WD40_Gbeta	PF25391	273 - 429	5.3e-09	G protein beta WD-40 repeat protein
Beta-prop_WDR5	PF25175	299 - 428	5.8e-19	WDR5 beta-propeller domain
Beta-prop_TEP1_2nd	PF25047	304 - 432	1.7e-07	TEP-1 second beta-propeller
Beta-prop_WDR3_1st	PF25173	308 - 480	5.9e-22	WDR3 first beta-propeller domain
Beta-prop_THOC3	PF25174	309 - 429	1.9e-15	THOC3 beta-propeller domain
WD40_CDC20-Fz	PF24807	310 - 431	6.8e-11	CDC20/Fizzy WD40 domain
WD40_Prp19	PF24814	311 - 429	1.2e-11	Prp19 WD40 domain
WD40_WDHD1_1st	PF24817	324 - 430	1.2e-08	WDHD1 first WD40 domain
WD40	PF00400	344 - 383	3.6e-07	WD domain, G-beta repeat
Beta-prop_TEP1_2nd	PF25047	370 - 566	6.4e-17	TEP-1 second beta-propeller
Beta-prop_WDR36-Utp21_2nd	PF25168	388 - 526	1.7e-06	WDR36/Utp21 second beta-propeller domain
Beta-prop_EML_2	PF23414	405 - 582	5.9e-14	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_THOC3	PF25174	412 - 535	1.5e-16	THOC3 beta-propeller domain
Beta-prop_WDR3_2nd	PF25172	413 - 605	1.3e-30	WDR3 second beta-propeller domain
WD40_CDC20-Fz	PF24807	441 - 604	1.7e-22	CDC20/Fizzy WD40 domain
Beta-prop_SCAP	PF24017	443 - 567	7e-09	SCAP Beta-propeller
WD40_WDHD1_1st	PF24817	443 - 533	3.8e-12	WDHD1 first WD40 domain
WD40_Prp19	PF24814	443 - 604	5.1e-24	Prp19 WD40 domain
Beta-prop_WDR3_1st	PF25173	445 - 604	1.3e-32	WDR3 first beta-propeller domain
Beta-prop_CAF1B_HIR1	PF24105	445 - 527	1.2e-08	CAF1B/HIR1 beta-propeller domain
Beta-prop_EML	PF23409	446 - 614	1.2e-12	Echinoderm microtubule-associated protein first beta-propeller
WD40	PF00400	446 - 478	2.9e-06	WD domain, G-beta repeat
EIF3I	PF24805	447 - 549	1e-10	EIF3I
Beta-prop_WDR36-Utp21_2nd	PF25168	448 - 609	1.3e-07	WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR5	PF25175	448 - 606	1.6e-34	WDR5 beta-propeller domain
WDR55	PF24796	451 - 603	2.8e-14	WDR55
WD40	PF00400	485 - 520	3.2e-08	WD domain, G-beta repeat
Beta-prop_WDR90_POC16_2nd	PF23393	505 - 612	7.8e-06	WDR90/POC16, second beta-propeller
WD40_Gbeta	PF25391	505 - 609	2.8e-13	G protein beta WD-40 repeat protein
Beta-prop_THOC3	PF25174	506 - 605	2.1e-15	THOC3 beta-propeller domain
EIF3I	PF24805	531 - 605	1.5e-08	EIF3I
Utp13	PF08625	627 - 676	5.8e-09	Utp13 specific WD40 associated domain
Utp13	PF08625	683 - 723	2.7e-09	Utp13 specific WD40 associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0010104)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16750
fragaria_vesca	FvH4_7g34000 FvH4_7g34000
malus_domestica	MD01G1236400.v1.1 MD07G1309100.v1.1
prunus_persica	Prupe.2G326400_v2.0.a1 Prupe.2G326400_v2.0.a1
pyrus_communis	pycom01g24430 pycom07g28110
rosa_chinensis	RchiOBHm_Chr1g0384251
rosa_laevigata	RLG00000026054
rosa_multiflora	Rmu_sc0011271.1_g000002
rosa_roxburghii	Rroxscaffold_4G00276810
rosa_rugosa	Rorug01G0446100 Rorug01G0446200 Rorug01G0446200
rosa_samantha	Rh1AG471700 Rh1BG429400 Rh1CG442000 Rh1DG462100
rosa_wichuraiana	Rw1G040090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	740
AarI	CACCTGC	2 cut(s)	733, 1091
AasI	GACNNNNNNGTC	1 cut(s)	1241
AbsI	CCTCGAGG	1 cut(s)	2317
Acc36I	ACCTGC	2 cut(s)	733, 1091
AccB1I	GGYRCC	1 cut(s)	68
AccBSI	CCGCTC	1 cut(s)	288
AccI	GTMKAC	1 cut(s)	2118
AccII	CGCG	1 cut(s)	545
AccIII	TCCGGA	1 cut(s)	1097
AciI	CCGC	8 cut(s)	66, 286, 357, 489, 1417, 1788, 1849, 2051
AclWI	GGATC	5 cut(s)	458, 528, 767, 1204, 2277
AcoI	YGGCCR	2 cut(s)	235, 1047
AcsI	RAATTY	6 cut(s)	477, 768, 775, 896, 950, 1318
AcuI	CTGAAG	3 cut(s)	801, 903, 2313
AcvI	CACGTG	1 cut(s)	2128
AcyI	GRCGYC	3 cut(s)	5, 69, 1866
AfaI	GTAC	6 cut(s)	156, 765, 1005, 1452, 1464, 1822
AfiI	CCNNNNNNNGG	7 cut(s)	253, 317, 340, 341, 1354, 1855, 2189
AflII	CTTAAG	1 cut(s)	1466
AflIII	ACRYGT	1 cut(s)	2252
AgeI	ACCGGT	1 cut(s)	30
Alw26I	GTCTC	1 cut(s)	12
AlwI	GGATC	5 cut(s)	458, 528, 767, 1204, 2277
AlwNI	CAGNNNCTG	1 cut(s)	1373
Ama87I	CYCGRG	1 cut(s)	2317
Aor13HI	TCCGGA	1 cut(s)	1097
AoxI	GGCC	5 cut(s)	183, 235, 308, 1047, 1949
ApeKI	GCWGC	7 cut(s)	697, 797, 826, 1343, 1785, 1796, 2312
ApoI	RAATTY	6 cut(s)	477, 768, 775, 896, 950, 1318
AsiGI	ACCGGT	1 cut(s)	30
Asp700I	GAANNNNTTC	1 cut(s)	900
AspLEI	GCGC	2 cut(s)	71, 110
AspS9I	GGNCC	5 cut(s)	262, 308, 888, 1414, 1641
AsuHPI	GGTGA	9 cut(s)	323, 419, 714, 761, 971, 1550, 1687, 1802, 2077
AvaI	CYCGRG	1 cut(s)	2317
AvaII	GGWCC	4 cut(s)	262, 888, 1414, 1641
BaeI	ACNNNNGTAYC	6 cut(s)	492, 525, 995, 1028, 1071, 1104
BanI	GGYRCC	1 cut(s)	68
BarI	GAAGNNNNNNTAC	2 cut(s)	11, 43
BauI	CACGAG	2 cut(s)	1576, 1635
BbrPI	CACGTG	1 cut(s)	2128
BbsI	GAAGAC	3 cut(s)	440, 617, 1769
BbvCI	CCTCAGC	1 cut(s)	203
BbvI	GCAGC	7 cut(s)	709, 809, 813, 1355, 1783, 1797, 2324
BceAI	ACGGC	2 cut(s)	62, 170
BclI	TGATCA	4 cut(s)	844, 1258, 1513, 1720
BcoDI	GTCTC	1 cut(s)	12
BfaI	CTAG	5 cut(s)	444, 524, 956, 1886, 2196
BfmI	CTRYAG	3 cut(s)	795, 1494, 2107
BfoI	RGCGCY	1 cut(s)	72
BfrI	CTTAAG	1 cut(s)	1466
BfuAI	ACCTGC	2 cut(s)	733, 1091
BglII	AGATCT	1 cut(s)	1444
BisI	GCNGC	8 cut(s)	67, 698, 798, 827, 1344, 1786, 1797, 2313
BlsI	GCNGC	8 cut(s)	68, 699, 799, 828, 1345, 1787, 1798, 2314
Bme18I	GGWCC	4 cut(s)	262, 888, 1414, 1641
BmeT110I	CYCGRG	1 cut(s)	2317
BmgT120I	GGNCC	5 cut(s)	262, 308, 888, 1414, 1641
BmiI	GGNNCC	8 cut(s)	70, 94, 263, 364, 587, 889, 1642, 1643
BmrI	ACTGGG	1 cut(s)	564
BmsI	GCATC	5 cut(s)	127, 1031, 1631, 1651, 1783
BmuI	ACTGGG	1 cut(s)	564
BoxI	GACNNNNGTC	1 cut(s)	1603
BpiI	GAAGAC	3 cut(s)	440, 617, 1769
BpmI	CTGGAG	2 cut(s)	1297, 1491
Bpu10I	CCTNAGC	1 cut(s)	203
BpuEI	CTTGAG	1 cut(s)	1253
BsaAI	YACGTR	2 cut(s)	2128, 2255
BsaBI	GATNNNNATC	1 cut(s)	2235
BsaHI	GRCGYC	3 cut(s)	5, 69, 1866
BsaJI	CCNNGG	4 cut(s)	180, 430, 754, 1171
BsaWI	WCCGGW	2 cut(s)	30, 1097
Bsc4I	CCNNNNNNNGG	7 cut(s)	253, 317, 340, 341, 1354, 1855, 2189
Bse118I	RCCGGY	3 cut(s)	30, 395, 1049
Bse1I	ACTGG	4 cut(s)	559, 1454, 1508, 1786
Bse3DI	GCAATG	1 cut(s)	1707
Bse8I	GATNNNNATC	1 cut(s)	2235
BseAI	TCCGGA	1 cut(s)	1097
BseDI	CCNNGG	4 cut(s)	180, 430, 754, 1171
BseGI	GGATG	8 cut(s)	83, 394, 457, 689, 1022, 1291, 1692, 2005
BseJI	GATNNNNATC	1 cut(s)	2235
BseLI	CCNNNNNNNGG	7 cut(s)	253, 317, 340, 341, 1354, 1855, 2189
BseMI	GCAATG	1 cut(s)	1707
BseMII	CTCAG	3 cut(s)	217, 1308, 2111
BseNI	ACTGG	4 cut(s)	559, 1454, 1508, 1786
BseRI	GAGGAG	3 cut(s)	139, 1871, 2279
BseXI	GCAGC	7 cut(s)	709, 809, 813, 1355, 1783, 1797, 2324
BsgI	GTGCAG	1 cut(s)	2144
Bsh1236I	CGCG	1 cut(s)	545
BshFI	GGCC	5 cut(s)	185, 237, 310, 1049, 1951
BshNI	GGYRCC	1 cut(s)	68
BshTI	ACCGGT	1 cut(s)	30
BsiHKCI	CYCGRG	1 cut(s)	2317
BsiSI	CCGG	8 cut(s)	31, 63, 114, 234, 360, 396, 1050, 1098
BsiWI	CGTACG	1 cut(s)	763
BslFI	GGGAC	5 cut(s)	23, 275, 901, 1247, 1654
BslI	CCNNNNNNNGG	7 cut(s)	253, 317, 340, 341, 1354, 1855, 2189
BsmAI	GTCTC	1 cut(s)	12
BsmBI	CGTCTC	1 cut(s)	12
BsmFI	GGGAC	5 cut(s)	23, 275, 901, 1247, 1654
BsmI	GAATGC	4 cut(s)	1521, 1709, 2023, 2061
BsnI	GGCC	5 cut(s)	185, 237, 310, 1049, 1951
BsoBI	CYCGRG	1 cut(s)	2317
Bsp13I	TCCGGA	1 cut(s)	1097
Bsp68I	TCGCGA	1 cut(s)	545
BspACI	CCGC	8 cut(s)	66, 286, 357, 489, 1417, 1788, 1849, 2051
BspANI	GGCC	5 cut(s)	185, 237, 310, 1049, 1951
BspCNI	CTCAG	3 cut(s)	216, 1307, 2110
BspEI	TCCGGA	1 cut(s)	1097
BspFNI	CGCG	1 cut(s)	545
BspHI	TCATGA	4 cut(s)	301, 496, 1975, 2026
BspLI	GGNNCC	8 cut(s)	70, 94, 263, 364, 587, 889, 1642, 1643
BspMAI	CTGCAG	1 cut(s)	799
BspMI	ACCTGC	2 cut(s)	733, 1091
BspPI	GGATC	5 cut(s)	458, 528, 767, 1204, 2277
BspQI	GCTCTTC	1 cut(s)	230
BspT107I	GGYRCC	1 cut(s)	68
BspTI	CTTAAG	1 cut(s)	1466
BsrBI	CCGCTC	1 cut(s)	288
BsrDI	GCAATG	1 cut(s)	1707
BsrFI	RCCGGY	3 cut(s)	30, 395, 1049
BsrI	ACTGG	4 cut(s)	559, 1454, 1508, 1786
BssAI	RCCGGY	3 cut(s)	30, 395, 1049
BssECI	CCNNGG	4 cut(s)	180, 430, 754, 1171
BssNI	GRCGYC	3 cut(s)	5, 69, 1866
BssSI	CACGAG	2 cut(s)	1576, 1635
BssT1I	CCWWGG	2 cut(s)	430, 1171
Bst2BI	CACGAG	2 cut(s)	1576, 1635
Bst4CI	ACNGT	9 cut(s)	54, 92, 242, 508, 571, 616, 745, 755, 1753
Bst6I	CTCTTC	4 cut(s)	230, 1985, 2037, 2205
BstACI	GRCGYC	3 cut(s)	5, 69, 1866
BstAFI	CTTAAG	1 cut(s)	1466
BstAPI	GCANNNNNTGC	1 cut(s)	1167
BstBAI	YACGTR	2 cut(s)	2128, 2255
BstC8I	GCNNGC	2 cut(s)	106, 1949
BstDEI	CTNAG	7 cut(s)	203, 471, 531, 905, 1294, 2097, 2380
BstDSI	CCRYGG	1 cut(s)	754
BstEII	GGTNACC	2 cut(s)	425, 749
BstF5I	GGATG	8 cut(s)	83, 394, 457, 689, 1022, 1291, 1692, 2005
BstFNI	CGCG	1 cut(s)	545
BstH2I	RGCGCY	1 cut(s)	72
BstHHI	GCGC	2 cut(s)	71, 110
BstMAI	GTCTC	1 cut(s)	12
BstMWI	GCNNNNNNNGC	7 cut(s)	114, 191, 243, 638, 1167, 1340, 1948
BstPAI	GACNNNNGTC	1 cut(s)	1603
BstPI	GGTNACC	2 cut(s)	425, 749
BstSFI	CTRYAG	3 cut(s)	795, 1494, 2107
BstUI	CGCG	1 cut(s)	545
BstV1I	GCAGC	7 cut(s)	709, 809, 813, 1355, 1783, 1797, 2324
BstV2I	GAAGAC	3 cut(s)	440, 617, 1769
BstX2I	RGATCY	4 cut(s)	463, 520, 1196, 1444
BstYI	RGATCY	4 cut(s)	463, 520, 1196, 1444
BsuRI	GGCC	5 cut(s)	185, 237, 310, 1049, 1951
BtgI	CCRYGG	1 cut(s)	754
BtgZI	GCGATG	1 cut(s)	85
BtsCI	GGATG	8 cut(s)	83, 394, 457, 689, 1022, 1291, 1692, 2005
BtsI	GCAGTG	2 cut(s)	189, 1419
BtsIMutI	CAGTG	3 cut(s)	189, 1252, 1419
BtuMI	TCGCGA	1 cut(s)	545
BveI	ACCTGC	2 cut(s)	733, 1091
Cac8I	GCNNGC	2 cut(s)	106, 1949
CaiI	CAGNNNCTG	1 cut(s)	1373
CciI	TCATGA	4 cut(s)	301, 496, 1975, 2026
CfoI	GCGC	2 cut(s)	71, 110
Cfr10I	RCCGGY	3 cut(s)	30, 395, 1049
Cfr13I	GGNCC	5 cut(s)	262, 308, 888, 1414, 1641
CseI	GACGC	5 cut(s)	25, 271, 1855, 1913, 2361
Csp6I	GTAC	6 cut(s)	155, 764, 1004, 1451, 1463, 1821
CspAI	ACCGGT	1 cut(s)	30
CviQI	GTAC	6 cut(s)	155, 764, 1004, 1451, 1463, 1821
DdeI	CTNAG	7 cut(s)	203, 471, 531, 905, 1294, 2097, 2380
DinI	GGCGCC	1 cut(s)	70
DraI	TTTAAA	1 cut(s)	421
DrdI	GACNNNNNNGTC	1 cut(s)	1241
DseDI	GACNNNNNNGTC	1 cut(s)	1241
EaeI	YGGCCR	2 cut(s)	235, 1047
Eam1104I	CTCTTC	4 cut(s)	230, 1985, 2037, 2205
EarI	CTCTTC	4 cut(s)	230, 1985, 2037, 2205
Eco130I	CCWWGG	2 cut(s)	430, 1171
Eco147I	AGGCCT	1 cut(s)	1951
Eco32I	GATATC	2 cut(s)	347, 1360
Eco47I	GGWCC	4 cut(s)	262, 888, 1414, 1641
Eco57I	CTGAAG	3 cut(s)	801, 903, 2313
Eco72I	CACGTG	1 cut(s)	2128
Eco88I	CYCGRG	1 cut(s)	2317
Eco91I	GGTNACC	2 cut(s)	425, 749
EcoO109I	RGGNCCY	3 cut(s)	262, 888, 1641
EcoO65I	GGTNACC	2 cut(s)	425, 749
EcoRI	GAATTC	1 cut(s)	775
EcoRV	GATATC	2 cut(s)	347, 1360
EcoT14I	CCWWGG	2 cut(s)	430, 1171
EcoT22I	ATGCAT	2 cut(s)	1523, 1709
EgeI	GGCGCC	1 cut(s)	70
EheI	GGCGCC	1 cut(s)	70
ErhI	CCWWGG	2 cut(s)	430, 1171
Esp3I	CGTCTC	1 cut(s)	12
FalI	AAGNNNNNCTT	4 cut(s)	209, 241, 813, 845
FaqI	GGGAC	5 cut(s)	23, 275, 901, 1247, 1654
FauNDI	CATATG	2 cut(s)	1602, 1717
FbaI	TGATCA	4 cut(s)	844, 1258, 1513, 1720
FblI	GTMKAC	1 cut(s)	2118
Fnu4HI	GCNGC	8 cut(s)	67, 698, 798, 827, 1344, 1786, 1797, 2313
FokI	GGATG	8 cut(s)	70, 401, 444, 676, 1009, 1298, 1699, 2012
Fsp4HI	GCNGC	8 cut(s)	67, 698, 798, 827, 1344, 1786, 1797, 2313
FspBI	CTAG	5 cut(s)	444, 524, 956, 1886, 2196
GlaI	GCGC	2 cut(s)	70, 109
GluI	GCNGC	8 cut(s)	67, 698, 798, 827, 1344, 1786, 1797, 2313
GsuI	CTGGAG	2 cut(s)	1297, 1491
HaeII	RGCGCY	1 cut(s)	72
HaeIII	GGCC	5 cut(s)	185, 237, 310, 1049, 1951
HapII	CCGG	8 cut(s)	31, 63, 114, 234, 360, 396, 1050, 1098
HgaI	GACGC	5 cut(s)	25, 271, 1855, 1913, 2361
HhaI	GCGC	2 cut(s)	71, 110
Hin1I	GRCGYC	3 cut(s)	5, 69, 1866
Hin6I	GCGC	2 cut(s)	69, 108
HinP1I	GCGC	2 cut(s)	69, 108
HindIII	AAGCTT	2 cut(s)	1842, 1940
HinfI	GANTC	7 cut(s)	119, 176, 937, 1151, 2068, 2213, 2221
HpaII	CCGG	8 cut(s)	31, 63, 114, 234, 360, 396, 1050, 1098
HphI	GGTGA	9 cut(s)	323, 419, 714, 761, 971, 1550, 1687, 1802, 2077
Hpy166II	GTNNAC	2 cut(s)	511, 2119
Hpy8I	GTNNAC	2 cut(s)	511, 2119
Hpy99I	CGWCG	3 cut(s)	92, 137, 215
HpyCH4III	ACNGT	9 cut(s)	54, 92, 242, 508, 571, 616, 745, 755, 1753
HpyCH4IV	ACGT	3 cut(s)	513, 2127, 2254
HpyF10VI	GCNNNNNNNGC	7 cut(s)	114, 191, 243, 638, 1167, 1340, 1948
HpyF3I	CTNAG	7 cut(s)	203, 471, 531, 905, 1294, 2097, 2380
HpySE526I	ACGT	3 cut(s)	513, 2127, 2254
Hsp92I	GRCGYC	3 cut(s)	5, 69, 1866
HspAI	GCGC	2 cut(s)	69, 108
KasI	GGCGCC	1 cut(s)	68
KflI	GGGWCCC	1 cut(s)	1641
Kpn2I	TCCGGA	1 cut(s)	1097
Ksp22I	TGATCA	4 cut(s)	844, 1258, 1513, 1720
LguI	GCTCTTC	1 cut(s)	230
LmnI	GCTCC	3 cut(s)	164, 362, 1205
Lsp1109I	GCAGC	7 cut(s)	709, 809, 813, 1355, 1783, 1797, 2324
LweI	GCATC	5 cut(s)	127, 1031, 1631, 1651, 1783
MaeI	CTAG	5 cut(s)	444, 524, 956, 1886, 2196
MaeII	ACGT	3 cut(s)	513, 2127, 2254
MaeIII	GTNAC	9 cut(s)	187, 329, 425, 616, 720, 749, 835, 1114, 1187
MbiI	CCGCTC	1 cut(s)	288
MflI	RGATCY	4 cut(s)	463, 520, 1196, 1444
Mly113I	GGCGCC	1 cut(s)	69
MlyI	GAGTC	3 cut(s)	128, 170, 2222
MmeI	TCCRAC	5 cut(s)	111, 168, 1183, 1735, 2127
Mph1103I	ATGCAT	2 cut(s)	1523, 1709
MroI	TCCGGA	1 cut(s)	1097
MroXI	GAANNNNTTC	1 cut(s)	900
MseI	TTAA	6 cut(s)	126, 197, 420, 1467, 1583, 1938
MslI	CAYNNNNRTG	1 cut(s)	2244
MspA1I	CMGCKG	2 cut(s)	842, 1788
MspCI	CTTAAG	1 cut(s)	1466
MspI	CCGG	8 cut(s)	31, 63, 114, 234, 360, 396, 1050, 1098
Mva1269I	GAATGC	4 cut(s)	1521, 1709, 2023, 2061
MvnI	CGCG	1 cut(s)	545
MwoI	GCNNNNNNNGC	7 cut(s)	114, 191, 243, 638, 1167, 1340, 1948
NarI	GGCGCC	1 cut(s)	69
NdeI	CATATG	2 cut(s)	1602, 1717
NlaIV	GGNNCC	8 cut(s)	70, 94, 263, 364, 587, 889, 1642, 1643
NmuCI	GTSAC	8 cut(s)	187, 329, 425, 720, 749, 835, 1114, 1187
NruI	TCGCGA	1 cut(s)	545
NsiI	ATGCAT	2 cut(s)	1523, 1709
PaeR7I	CTCGAG	1 cut(s)	2317
PagI	TCATGA	4 cut(s)	301, 496, 1975, 2026
PaqCI	CACCTGC	2 cut(s)	733, 1091
PceI	AGGCCT	1 cut(s)	1951
PciSI	GCTCTTC	1 cut(s)	230
PctI	GAATGC	4 cut(s)	1521, 1709, 2023, 2061
PdmI	GAANNNNTTC	1 cut(s)	900
PfeI	GAWTC	4 cut(s)	937, 1151, 2068, 2221
Pfl23II	CGTACG	1 cut(s)	763
PinAI	ACCGGT	1 cut(s)	30
PkrI	GCNGC	8 cut(s)	68, 699, 799, 828, 1345, 1787, 1798, 2314
PleI	GAGTC	3 cut(s)	127, 170, 2221
PluTI	GGCGCC	1 cut(s)	72
PmaCI	CACGTG	1 cut(s)	2128
PmlI	CACGTG	1 cut(s)	2128
PpsI	GAGTC	3 cut(s)	127, 170, 2221
Ppu21I	YACGTR	2 cut(s)	2128, 2255
PpuMI	RGGWCCY	3 cut(s)	262, 888, 1641
PshAI	GACNNNNGTC	1 cut(s)	1603
PsiI	TTATAA	1 cut(s)	740
Psp5II	RGGWCCY	3 cut(s)	262, 888, 1641
PspCI	CACGTG	1 cut(s)	2128
PspEI	GGTNACC	2 cut(s)	425, 749
PspLI	CGTACG	1 cut(s)	763
PspN4I	GGNNCC	8 cut(s)	70, 94, 263, 364, 587, 889, 1642, 1643
PspPI	GGNCC	5 cut(s)	262, 308, 888, 1414, 1641
PspPPI	RGGWCCY	3 cut(s)	262, 888, 1641
PspXI	VCTCGAGB	1 cut(s)	2317
PstI	CTGCAG	1 cut(s)	799
PstNI	CAGNNNCTG	1 cut(s)	1373
PsuI	RGATCY	4 cut(s)	463, 520, 1196, 1444
PvuII	CAGCTG	1 cut(s)	842
RruI	TCGCGA	1 cut(s)	545
RsaI	GTAC	6 cut(s)	156, 765, 1005, 1452, 1464, 1822
RsaNI	GTAC	6 cut(s)	155, 764, 1004, 1451, 1463, 1821
RseI	CAYNNNNRTG	1 cut(s)	2244
SapI	GCTCTTC	1 cut(s)	230
SaqAI	TTAA	6 cut(s)	126, 197, 420, 1467, 1583, 1938
SatI	GCNGC	8 cut(s)	67, 698, 798, 827, 1344, 1786, 1797, 2313
Sau96I	GGNCC	5 cut(s)	262, 308, 888, 1414, 1641
SchI	GAGTC	3 cut(s)	128, 170, 2222
SfaNI	GCATC	5 cut(s)	127, 1031, 1631, 1651, 1783
SfcI	CTRYAG	3 cut(s)	795, 1494, 2107
SfoI	GGCGCC	1 cut(s)	70
Sfr274I	CTCGAG	1 cut(s)	2317
SinI	GGWCC	4 cut(s)	262, 888, 1414, 1641
SlaI	CTCGAG	1 cut(s)	2317
SmiMI	CAYNNNNRTG	1 cut(s)	2244
SmlI	CTYRAG	3 cut(s)	1268, 1466, 2317
SmoI	CTYRAG	3 cut(s)	1268, 1466, 2317
SseBI	AGGCCT	1 cut(s)	1951
SsiI	CCGC	8 cut(s)	66, 286, 357, 489, 1417, 1788, 1849, 2051
SspDI	GGCGCC	1 cut(s)	68
SspMI	CTAG	5 cut(s)	444, 524, 956, 1886, 2196
StuI	AGGCCT	1 cut(s)	1951
StyI	CCWWGG	2 cut(s)	430, 1171
TaaI	ACNGT	9 cut(s)	54, 92, 242, 508, 571, 616, 745, 755, 1753
TaiI	ACGT	3 cut(s)	516, 2130, 2257
TaqI	TCGA	5 cut(s)	135, 1618, 2165, 2318, 2333
TatI	WGTACW	2 cut(s)	1462, 1820
TauI	GCSGC	1 cut(s)	69
TfiI	GAWTC	4 cut(s)	937, 1151, 2068, 2221
Tru1I	TTAA	6 cut(s)	126, 197, 420, 1467, 1583, 1938
Tru9I	TTAA	6 cut(s)	126, 197, 420, 1467, 1583, 1938
TscAI	CASTG	3 cut(s)	196, 1252, 1426
TseFI	GTSAC	8 cut(s)	187, 329, 425, 720, 749, 835, 1114, 1187
TseI	GCWGC	7 cut(s)	697, 797, 826, 1343, 1785, 1796, 2312
Tsp45I	GTSAC	8 cut(s)	187, 329, 425, 720, 749, 835, 1114, 1187
TspGWI	ACGGA	1 cut(s)	2341
TspRI	CASTG	3 cut(s)	196, 1252, 1426
Vha464I	CTTAAG	1 cut(s)	1466
VpaK11BI	GGWCC	4 cut(s)	262, 888, 1414, 1641
XapI	RAATTY	6 cut(s)	477, 768, 775, 896, 950, 1318
XbaI	TCTAGA	1 cut(s)	523
XhoI	CTCGAG	1 cut(s)	2317
XmiI	GTMKAC	1 cut(s)	2118
XmnI	GAANNNNTTC	1 cut(s)	900
XspI	CTAG	5 cut(s)	444, 524, 956, 1886, 2196
Zsp2I	ATGCAT	2 cut(s)	1523, 1709

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.