Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0010104

Physical Location & Seq

Genomic Coordinates Forward (+)

69512719 .. 69518175

Gene Structure 5457 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG442000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2025 bp

ATGGCGTCTCTACCTTTGAAGAAGAACTACCGGTGCGTCCCCTCTCTGCAACCGTTCTACTCCGGCGGCGCCTTTGCCGTCTCATCCGACGGTTCCTTCATCGCCTGCGCTTCCGACGAGTCCATTAACATCGTCGATGCCTCCAACTCCTCTGTACGCTCCACTCTGGAAGGCGACTCCGAGGCCGTCACTGCTTTAACCCTCAGCCCCGACGACAAATTCCTCTTCTCTTCTGGCCACAGTCGCCTCATTAGGGTTTGGGACCTCTCCACCTTCAAATGCGTCCGCTCTTGGAAGGGTCATGATGGGCCTGTGATGGGAATGGCTTGTCACCCATCCGGGGGATATCTTGCCACCGCCGGAGCCGATAAGAAGGTTATAGTTTGGGATGTTGCCGGTAGCTTTGCCACTCATCACTTTAAAGGTCACCAAGGGGTTGTTTCTAGTCTTCTCTTTCATCCAGATCCTACTAAGCAAATTCTTTTCTCCGCAAGTCATGATACAACTGTGAACGTCTGGGATCTAGATACTAAGAAGCGTGTCGCAACACTTACTGAGCATAACTCAACGGTAACTTCTATGGCATTATCCGAAGATGGGCGCACGTTGCTCACAGCTGGAAGAGATAAGGTTGTGATCTTGTGGAACCTTGATGACTACAACTGCTTGAAGACTGTAACAACATATGAAGCCCTTGAAGCTGTGTGTGTAATTCCTTCTGGAACTCTTTTATCTTCCCGTTTCGGTTCATCCAAGGGGCGGAATGGGAAGAAAAGCAAGTCACCTGCAATATGTTTTATAACAGTTGGTGACCGTGGGATCGTACGAATTTGGAATTCTGAAGGTGCAGTTTGCCTATTTGAGCAGAAGTCCTCAGATGTTACTATCACCTCTGATGACGATGAATCAAAACGGGGCTTTACTGCAGCTTCACTGCTACCATCAGATCAAGGGCTGCTTTGTGTGACAGCTGATCAGGAGTTCCTTTTATATTCTCCTGTTGAAAGCCCTGAAGGGACCTTTGACTTTGTTCTAAGCAAAAGACTCGTAGGAAATAATGGAGAGATTCTGGATATGAAATTTCTAGGTGATGAAGAACAATTTATCGCTGTCGCCACAAATACTGAACAGGTACGAGTGTTTGATGTTGCATCCATGTCATGTTCTCATGTATTGGCCGGTCATACTGAAATTGTTATGTGCCTTGACACCTGCGTATCAAGTTCCGGAAGAACACTTATAGTGACAGGAAGCAAGGATAATAGTGTTAGGTTGTGGGAATCAGAAAGCAGATGTTGCCTTGGTGTTGGCGTAGGTCACATGGGATCTGTTGGAGCTATTGCTTTCTCGAAGAAGCAGAGGGACTTCTTTGTCAGTGGTAGTAGTGATCGTACCCTCAAGGTCTGGAGTTTGGATGGTATCTCAGACAATGTGGAAAAGCCAATAAATTTGAAAGCAAAAGCTGTTGTAGCAGCCCACGATAAGGATATCAATTCAGTAGCTGTTGCACCAAATGATAGTTTAGTTTGTAGTGGTTCACAGGACCGCACTGCTTGTGTTTGGAGGCTTCCTGATCTTGTACCAGTAGTTGTACTTAAGGGTCATAAAAGAGGGGTTTGGTCTGTAGAGTTTTCTCCAGTTGATCAATGCATTCTGACTACATCTGGAGATAAAACAATAAAGATATGGGCTATATCAGATGGCTCGTGCTTAAAATCATTTGAAGGACACATGTCAAGTGTATATCGAGCATCATTTCTTACTCGTGGGACCCAATTTATTTCTTCTGATGCTGATGGTTTGGTGAAGCTGTGGATGGTCAAAACAAATGAATGCATTGCTACATATGATCAGCATGAGGACAAGGTTTGGGCATTGACGGTTGGAAAGAAGACAGAAATGGTTGCAACTGGCAGTGGTGATGCTGCCATCAATCTGTGGTATGATTGTACTGCCTCTGATAAAGAGGAAGCTTTCCGCAGAGAGGTGAGCCATTACTGGCTGTTTTCTTGTATACAGTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000462 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031974 GO:0031981 GO:0032040 GO:0032991 GO:0034388 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Utp13 WD40

Protein Analysis

674

Amino Acids

73.21

Weight (kDa)

5.82

Isoelectric Point (pI)

37.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_DCAF4	PF23761	25 - 131	1.2e-06	DDB1- and CUL4-associated factor 4 beta-propeller domain
WD40_WDHD1_1st	PF24817	25 - 100	2.6e-11	WDHD1 first WD40 domain
Beta-prop_WDR5	PF25175	26 - 155	1.2e-22	WDR5 beta-propeller domain
Beta-prop_WDR3_2nd	PF25172	26 - 130	1.1e-12	WDR3 second beta-propeller domain
Beta-prop_THOC3	PF25174	26 - 230	1.6e-36	THOC3 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	27 - 131	4.5e-19	WDR3 first beta-propeller domain
Beta-prop_WDR36-Utp21_2nd	PF25168	27 - 95	1.4e-06	WDR36/Utp21 second beta-propeller domain
WD40_Gbeta	PF25391	27 - 155	5.5e-08	G protein beta WD-40 repeat protein
WDR55	PF24796	28 - 132	7.7e-08	WDR55
Beta-prop_TEP1_2nd	PF25047	29 - 223	3.6e-18	TEP-1 second beta-propeller
WD40_Prp19	PF24814	30 - 245	3.9e-39	Prp19 WD40 domain
WD40_CDC20-Fz	PF24807	31 - 249	9.8e-27	CDC20/Fizzy WD40 domain
Beta-prop_WDR36-Utp21_1st	PF25171	33 - 218	5.3e-16	WDR36/Utp21 first beta-propeller
WD40	PF00400	53 - 88	5.3e-06	WD domain, G-beta repeat
Beta-prop_WDR5	PF25175	57 - 240	3.7e-37	WDR5 beta-propeller domain
Beta-prop_EML_2	PF23414	64 - 203	9.5e-17	Echinoderm microtubule-associated protein second beta-propeller
WD40_MABP1-WDR62_2nd	PF24782	72 - 175	3.2e-11	MABP1/WDR62 second WD40 domain
Beta-prop_WDR3_2nd	PF25172	91 - 216	1e-17	WDR3 second beta-propeller domain
WD40	PF00400	93 - 130	2.8e-09	WD domain, G-beta repeat
Beta-prop_EML	PF23409	96 - 232	1.1e-09	Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_WDR36-Utp21_2nd	PF25168	99 - 246	1.2e-15	WDR36/Utp21 second beta-propeller domain
WD40_WDHD1_1st	PF24817	104 - 184	2.9e-10	WDHD1 first WD40 domain
WD40_MABP1-WDR62_1st	PF24780	108 - 228	1.2e-09	MABP1/WDR62 first WD40 domain
WDR55	PF24796	111 - 230	2.6e-11	WDR55
Beta-prop_WDR90_POC16_2nd	PF23393	111 - 220	2.4e-11	WDR90/POC16, second beta-propeller
Beta-prop_WDR41	PF25178	117 - 219	1.4e-07	WDR41
Beta-prop_WDR3_1st	PF25173	123 - 225	4.3e-22	WDR3 first beta-propeller domain
WD40	PF00400	138 - 174	2.5e-06	WD domain, G-beta repeat
EIF3I	PF24805	141 - 255	7.6e-10	EIF3I
Beta-prop_Aladin	PF25460	142 - 244	4.7e-07	Aladin seven-bladed propeller
Beta-prop_IFT140_1st	PF23383	146 - 223	1.9e-06	IFT140 first beta-propeller
WD40_MABP1-WDR62_2nd	PF24782	155 - 217	7.3e-06	MABP1/WDR62 second WD40 domain
WD40_WDHD1_1st	PF24817	157 - 234	2.4e-10	WDHD1 first WD40 domain
WD40_Gbeta	PF25391	162 - 245	9.2e-11	G protein beta WD-40 repeat protein
WD40	PF00400	179 - 216	2.3e-07	WD domain, G-beta repeat
WD40_MABP1-WDR62_2nd	PF24782	257 - 606	9.9e-18	MABP1/WDR62 second WD40 domain
Beta-prop_WDR3_2nd	PF25172	263 - 522	7.7e-20	WDR3 second beta-propeller domain
Beta-prop_WDR5	PF25175	305 - 471	9.6e-20	WDR5 beta-propeller domain
WD40_Gbeta	PF25391	314 - 471	6.8e-09	G protein beta WD-40 repeat protein
WD40_CDC20-Fz	PF24807	347 - 471	3.8e-11	CDC20/Fizzy WD40 domain
Beta-prop_TEP1_2nd	PF25047	348 - 474	3.9e-07	TEP-1 second beta-propeller
Beta-prop_WDR3_1st	PF25173	351 - 472	5e-18	WDR3 first beta-propeller domain
Beta-prop_THOC3	PF25174	352 - 471	5.9e-15	THOC3 beta-propeller domain
WD40_Prp19	PF24814	354 - 472	9.1e-12	Prp19 WD40 domain
WD40_WDHD1_1st	PF24817	367 - 473	1.6e-08	WDHD1 first WD40 domain
WD40	PF00400	387 - 426	2.9e-07	WD domain, G-beta repeat
Beta-prop_WDR36-Utp21_2nd	PF25168	431 - 572	7.6e-07	WDR36/Utp21 second beta-propeller domain
Beta-prop_TEP1_2nd	PF25047	436 - 611	3.4e-13	TEP-1 second beta-propeller
Beta-prop_THOC3	PF25174	439 - 648	3.3e-29	THOC3 beta-propeller domain
Beta-prop_EML_2	PF23414	448 - 625	4.1e-14	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR3_2nd	PF25172	458 - 648	8e-30	WDR3 second beta-propeller domain
WD40_CDC20-Fz	PF24807	484 - 647	1.2e-22	CDC20/Fizzy WD40 domain
WD40_Prp19	PF24814	486 - 647	3.6e-24	Prp19 WD40 domain
Beta-prop_SCAP	PF24017	486 - 606	3e-09	SCAP Beta-propeller
WD40_WDHD1_1st	PF24817	486 - 576	3.6e-12	WDHD1 first WD40 domain
Beta-prop_WDR3_1st	PF25173	488 - 647	1e-32	WDR3 first beta-propeller domain
Beta-prop_CAF1B_HIR1	PF24105	488 - 570	1.3e-08	CAF1B/HIR1 beta-propeller domain
Beta-prop_EML	PF23409	489 - 649	1.9e-12	Echinoderm microtubule-associated protein first beta-propeller
WD40	PF00400	489 - 521	2.4e-06	WD domain, G-beta repeat
EIF3I	PF24805	490 - 592	8.3e-11	EIF3I
Beta-prop_WDR5	PF25175	491 - 648	1.9e-34	WDR5 beta-propeller domain
Beta-prop_WDR36-Utp21_2nd	PF25168	491 - 652	9.6e-08	WDR36/Utp21 second beta-propeller domain
WDR55	PF24796	494 - 646	2.8e-14	WDR55
WD40	PF00400	528 - 563	2.6e-08	WD domain, G-beta repeat
WD40_Gbeta	PF25391	548 - 652	2.4e-13	G protein beta WD-40 repeat protein
EIF3I	PF24805	574 - 648	1.5e-08	EIF3I

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

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Orthologous Genes (Group: OG0010104)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16750
fragaria_vesca	FvH4_7g34000 FvH4_7g34000
malus_domestica	MD01G1236400.v1.1 MD07G1309100.v1.1
prunus_persica	Prupe.2G326400_v2.0.a1 Prupe.2G326400_v2.0.a1
pyrus_communis	pycom01g24430 pycom07g28110
rosa_chinensis	RchiOBHm_Chr1g0384251
rosa_laevigata	RLG00000026054
rosa_multiflora	Rmu_sc0011271.1_g000002
rosa_roxburghii	Rroxscaffold_4G00276810
rosa_rugosa	Rorug01G0446100 Rorug01G0446200 Rorug01G0446200
rosa_samantha	Rh1AG471700 Rh1BG429400 Rh1CG442000 Rh1DG462100
rosa_wichuraiana	Rw1G040090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	800
AarI	CACCTGC	2 cut(s)	793, 1220
AasI	GACNNNNNNGTC	1 cut(s)	1370
Acc36I	ACCTGC	2 cut(s)	793, 1220
AccB1I	GGYRCC	1 cut(s)	68
AccBSI	CCGCTC	1 cut(s)	288
AccI	GTMKAC	1 cut(s)	2014
AccIII	TCCGGA	1 cut(s)	1226
AciI	CCGC	7 cut(s)	66, 286, 357, 489, 760, 1546, 1978
AclWI	GGATC	4 cut(s)	458, 528, 827, 1333
AcoI	YGGCCR	2 cut(s)	235, 1176
AcsI	RAATTY	6 cut(s)	218, 477, 828, 835, 1079, 1447
AcuI	CTGAAG	2 cut(s)	861, 1032
AcyI	GRCGYC	2 cut(s)	5, 69
AfaI	GTAC	7 cut(s)	156, 825, 1134, 1393, 1581, 1593, 1951
AfiI	CCNNNNNNNGG	8 cut(s)	253, 317, 340, 341, 597, 759, 1483, 1984
AflII	CTTAAG	1 cut(s)	1595
AflIII	ACRYGT	1 cut(s)	1731
AgeI	ACCGGT	1 cut(s)	30
AgsI	TTSAA	7 cut(s)	19, 277, 670, 698, 1004, 1453, 1724
Alw26I	GTCTC	2 cut(s)	12, 85
AlwI	GGATC	4 cut(s)	458, 528, 827, 1333
AlwNI	CAGNNNCTG	1 cut(s)	1502
Aor13HI	TCCGGA	1 cut(s)	1226
AoxI	GGCC	4 cut(s)	183, 235, 308, 1176
ApeKI	GCWGC	4 cut(s)	926, 955, 1472, 1925
ApoI	RAATTY	6 cut(s)	218, 477, 828, 835, 1079, 1447
AsiGI	ACCGGT	1 cut(s)	30
AspLEI	GCGC	3 cut(s)	71, 110, 603
AspS9I	GGNCC	5 cut(s)	262, 308, 1017, 1543, 1770
AsuC2I	CCSGG	1 cut(s)	340
AsuHPI	GGTGA	9 cut(s)	323, 419, 774, 821, 880, 1100, 1816, 1931, 1999
AvaII	GGWCC	4 cut(s)	262, 1017, 1543, 1770
BaeI	ACNNNNGTAYC	6 cut(s)	492, 525, 1124, 1157, 1200, 1233
BalI	TGGCCA	1 cut(s)	237
BanI	GGYRCC	1 cut(s)	68
BarI	GAAGNNNNNNTAC	2 cut(s)	11, 43
BauI	CACGAG	2 cut(s)	1705, 1764
BbsI	GAAGAC	3 cut(s)	440, 677, 1898
BbvCI	CCTCAGC	1 cut(s)	203
BbvI	GCAGC	4 cut(s)	938, 942, 1484, 1912
BceAI	ACGGC	2 cut(s)	62, 170
BcgI	CGANNNNNNTGC	2 cut(s)	1027, 1061
BclI	TGATCA	3 cut(s)	973, 1642, 1849
BcnI	CCSGG	1 cut(s)	340
BcoDI	GTCTC	2 cut(s)	12, 85
BfaI	CTAG	3 cut(s)	444, 524, 1085
BfmI	CTRYAG	2 cut(s)	924, 1623
BfoI	RGCGCY	1 cut(s)	72
BfrI	CTTAAG	1 cut(s)	1595
BfuAI	ACCTGC	2 cut(s)	793, 1220
BisI	GCNGC	5 cut(s)	67, 927, 956, 1473, 1926
BlsI	GCNGC	5 cut(s)	68, 928, 957, 1474, 1927
Bme1390I	CCNGG	1 cut(s)	340
Bme18I	GGWCC	4 cut(s)	262, 1017, 1543, 1770
BmgT120I	GGNCC	5 cut(s)	262, 308, 1017, 1543, 1770
BmiI	GGNNCC	8 cut(s)	70, 94, 263, 364, 647, 1018, 1771, 1772
BmrFI	CCNGG	1 cut(s)	340
BmsI	GCATC	5 cut(s)	127, 1160, 1760, 1780, 1912
BoxI	GACNNNNGTC	1 cut(s)	1732
BpiI	GAAGAC	3 cut(s)	440, 677, 1898
BplI	GAGNNNNNCTC	2 cut(s)	548, 580
BpmI	CTGGAG	3 cut(s)	1426, 1620, 1686
Bpu10I	CCTNAGC	1 cut(s)	203
BpuEI	CTTGAG	1 cut(s)	1382
BpuMI	CCSGG	1 cut(s)	340
BsaHI	GRCGYC	2 cut(s)	5, 69
BsaJI	CCNNGG	6 cut(s)	180, 339, 430, 753, 814, 1300
BsaWI	WCCGGW	2 cut(s)	30, 1226
Bsc4I	CCNNNNNNNGG	8 cut(s)	253, 317, 340, 341, 597, 759, 1483, 1984
Bse118I	RCCGGY	3 cut(s)	30, 395, 1178
Bse1I	ACTGG	4 cut(s)	1583, 1637, 1915, 2003
Bse3DI	GCAATG	1 cut(s)	1836
BseAI	TCCGGA	1 cut(s)	1226
BseDI	CCNNGG	6 cut(s)	180, 339, 430, 753, 814, 1300
BseGI	GGATG	8 cut(s)	83, 335, 394, 457, 749, 1151, 1420, 1821
BseLI	CCNNNNNNNGG	8 cut(s)	253, 317, 340, 341, 597, 759, 1483, 1984
BseMI	GCAATG	1 cut(s)	1836
BseMII	CTCAG	4 cut(s)	217, 546, 888, 1437
BseNI	ACTGG	4 cut(s)	1583, 1637, 1915, 2003
BseRI	GAGGAG	1 cut(s)	139
BseXI	GCAGC	4 cut(s)	938, 942, 1484, 1912
BsgI	GTGCAG	1 cut(s)	867
BshFI	GGCC	4 cut(s)	185, 237, 310, 1178
BshNI	GGYRCC	1 cut(s)	68
BshTI	ACCGGT	1 cut(s)	30
BsiSI	CCGG	7 cut(s)	31, 63, 339, 360, 396, 1179, 1227
BsiWI	CGTACG	1 cut(s)	823
BslFI	GGGAC	5 cut(s)	23, 275, 1030, 1376, 1783
BslI	CCNNNNNNNGG	8 cut(s)	253, 317, 340, 341, 597, 759, 1483, 1984
BsmAI	GTCTC	2 cut(s)	12, 85
BsmBI	CGTCTC	2 cut(s)	12, 85
BsmFI	GGGAC	5 cut(s)	23, 275, 1030, 1376, 1783
BsmI	GAATGC	2 cut(s)	1650, 1838
BsnI	GGCC	4 cut(s)	185, 237, 310, 1178
Bsp13I	TCCGGA	1 cut(s)	1226
BspACI	CCGC	7 cut(s)	66, 286, 357, 489, 760, 1546, 1978
BspANI	GGCC	4 cut(s)	185, 237, 310, 1178
BspCNI	CTCAG	4 cut(s)	216, 547, 887, 1436
BspEI	TCCGGA	1 cut(s)	1226
BspHI	TCATGA	2 cut(s)	301, 496
BspLI	GGNNCC	8 cut(s)	70, 94, 263, 364, 647, 1018, 1771, 1772
BspMAI	CTGCAG	1 cut(s)	928
BspMI	ACCTGC	2 cut(s)	793, 1220
BspPI	GGATC	4 cut(s)	458, 528, 827, 1333
BspT107I	GGYRCC	1 cut(s)	68
BspTI	CTTAAG	1 cut(s)	1595
BsrBI	CCGCTC	1 cut(s)	288
BsrDI	GCAATG	1 cut(s)	1836
BsrFI	RCCGGY	3 cut(s)	30, 395, 1178
BsrI	ACTGG	4 cut(s)	1583, 1637, 1915, 2003
BssAI	RCCGGY	3 cut(s)	30, 395, 1178
BssECI	CCNNGG	6 cut(s)	180, 339, 430, 753, 814, 1300
BssNAI	GTATAC	1 cut(s)	2015
BssNI	GRCGYC	2 cut(s)	5, 69
BssSI	CACGAG	2 cut(s)	1705, 1764
BssT1I	CCWWGG	3 cut(s)	430, 753, 1300
Bst1107I	GTATAC	1 cut(s)	2015
Bst2BI	CACGAG	2 cut(s)	1705, 1764
Bst6I	CTCTTC	3 cut(s)	230, 235, 616
BstACI	GRCGYC	2 cut(s)	5, 69
BstAFI	CTTAAG	1 cut(s)	1595
BstAPI	GCANNNNNTGC	1 cut(s)	1296
BstC8I	GCNNGC	1 cut(s)	106
BstDEI	CTNAG	7 cut(s)	203, 471, 531, 555, 874, 1034, 1423
BstDSI	CCRYGG	1 cut(s)	814
BstEII	GGTNACC	2 cut(s)	425, 809
BstF5I	GGATG	8 cut(s)	83, 335, 394, 457, 749, 1151, 1420, 1821
BstH2I	RGCGCY	1 cut(s)	72
BstHHI	GCGC	3 cut(s)	71, 110, 603
BstMAI	GTCTC	2 cut(s)	12, 85
BstMWI	GCNNNNNNNGC	6 cut(s)	191, 243, 607, 698, 1296, 1469
BstNSI	RCATGY	1 cut(s)	1735
BstPAI	GACNNNNGTC	1 cut(s)	1732
BstPI	GGTNACC	2 cut(s)	425, 809
BstSCI	CCNGG	1 cut(s)	338
BstSFI	CTRYAG	2 cut(s)	924, 1623
BstV1I	GCAGC	4 cut(s)	938, 942, 1484, 1912
BstV2I	GAAGAC	3 cut(s)	440, 677, 1898
BstX2I	RGATCY	3 cut(s)	463, 520, 1325
BstYI	RGATCY	3 cut(s)	463, 520, 1325
BstZ17I	GTATAC	1 cut(s)	2015
BsuRI	GGCC	4 cut(s)	185, 237, 310, 1178
BtgI	CCRYGG	1 cut(s)	814
BtgZI	GCGATG	1 cut(s)	85
BtsCI	GGATG	8 cut(s)	83, 335, 394, 457, 749, 1151, 1420, 1821
BtsI	GCAGTG	4 cut(s)	189, 932, 1548, 1921
BtsIMutI	CAGTG	6 cut(s)	189, 932, 1381, 1548, 1921, 2024
BveI	ACCTGC	2 cut(s)	793, 1220
Cac8I	GCNNGC	1 cut(s)	106
CaiI	CAGNNNCTG	1 cut(s)	1502
CciI	TCATGA	2 cut(s)	301, 496
CfoI	GCGC	3 cut(s)	71, 110, 603
Cfr10I	RCCGGY	3 cut(s)	30, 395, 1178
Cfr13I	GGNCC	5 cut(s)	262, 308, 1017, 1543, 1770
CseI	GACGC	2 cut(s)	25, 271
Csp6I	GTAC	7 cut(s)	155, 824, 1133, 1392, 1580, 1592, 1950
CspAI	ACCGGT	1 cut(s)	30
CviAII	CATG	8 cut(s)	302, 497, 1156, 1161, 1169, 1321, 1732, 1856
CviQI	GTAC	7 cut(s)	155, 824, 1133, 1392, 1580, 1592, 1950
DdeI	CTNAG	7 cut(s)	203, 471, 531, 555, 874, 1034, 1423
DinI	GGCGCC	1 cut(s)	70
DraI	TTTAAA	1 cut(s)	421
DrdI	GACNNNNNNGTC	1 cut(s)	1370
DseDI	GACNNNNNNGTC	1 cut(s)	1370
EaeI	YGGCCR	2 cut(s)	235, 1176
Eam1104I	CTCTTC	3 cut(s)	230, 235, 616
EarI	CTCTTC	3 cut(s)	230, 235, 616
EciI	GGCGGA	1 cut(s)	775
Eco130I	CCWWGG	3 cut(s)	430, 753, 1300
Eco32I	GATATC	2 cut(s)	347, 1489
Eco47I	GGWCC	4 cut(s)	262, 1017, 1543, 1770
Eco57I	CTGAAG	2 cut(s)	861, 1032
Eco91I	GGTNACC	2 cut(s)	425, 809
EcoO109I	RGGNCCY	3 cut(s)	262, 1017, 1770
EcoO65I	GGTNACC	2 cut(s)	425, 809
EcoRI	GAATTC	1 cut(s)	835
EcoRV	GATATC	2 cut(s)	347, 1489
EcoT14I	CCWWGG	3 cut(s)	430, 753, 1300
EcoT22I	ATGCAT	2 cut(s)	1652, 1838
EgeI	GGCGCC	1 cut(s)	70
EheI	GGCGCC	1 cut(s)	70
ErhI	CCWWGG	3 cut(s)	430, 753, 1300
Esp3I	CGTCTC	2 cut(s)	12, 85
FaeI	CATG	8 cut(s)	305, 500, 1159, 1164, 1172, 1324, 1735, 1859
FalI	AAGNNNNNCTT	2 cut(s)	942, 974
FaqI	GGGAC	5 cut(s)	23, 275, 1030, 1376, 1783
FatI	CATG	8 cut(s)	301, 496, 1155, 1160, 1168, 1320, 1731, 1855
FauNDI	CATATG	2 cut(s)	685, 1846
FbaI	TGATCA	3 cut(s)	973, 1642, 1849
FblI	GTMKAC	1 cut(s)	2014
Fnu4HI	GCNGC	5 cut(s)	67, 927, 956, 1473, 1926
FokI	GGATG	8 cut(s)	70, 322, 401, 444, 736, 1138, 1427, 1828
Fsp4HI	GCNGC	5 cut(s)	67, 927, 956, 1473, 1926
FspBI	CTAG	3 cut(s)	444, 524, 1085
GlaI	GCGC	3 cut(s)	70, 109, 602
GluI	GCNGC	5 cut(s)	67, 927, 956, 1473, 1926
GsuI	CTGGAG	3 cut(s)	1426, 1620, 1686
HaeII	RGCGCY	1 cut(s)	72
HaeIII	GGCC	4 cut(s)	185, 237, 310, 1178
HapII	CCGG	7 cut(s)	31, 63, 339, 360, 396, 1179, 1227
HgaI	GACGC	2 cut(s)	25, 271
HhaI	GCGC	3 cut(s)	71, 110, 603
Hin1I	GRCGYC	2 cut(s)	5, 69
Hin1II	CATG	8 cut(s)	305, 500, 1159, 1164, 1172, 1324, 1735, 1859
Hin6I	GCGC	3 cut(s)	69, 108, 601
HinP1I	GCGC	3 cut(s)	69, 108, 601
HindIII	AAGCTT	1 cut(s)	1971
HinfI	GANTC	6 cut(s)	119, 176, 905, 1044, 1066, 1280
HpaII	CCGG	7 cut(s)	31, 63, 339, 360, 396, 1179, 1227
HphI	GGTGA	9 cut(s)	323, 419, 774, 821, 880, 1100, 1816, 1931, 1999
Hpy166II	GTNNAC	3 cut(s)	511, 1538, 2015
Hpy8I	GTNNAC	3 cut(s)	511, 1538, 2015
Hpy99I	CGWCG	4 cut(s)	92, 119, 137, 215
HpyAV	CCTTC	9 cut(s)	106, 164, 283, 289, 367, 726, 836, 1007, 1718
HpyCH4IV	ACGT	2 cut(s)	513, 605
HpyCH4V	TGCA	9 cut(s)	49, 788, 848, 926, 1151, 1508, 1650, 1836, 1907
HpyF10VI	GCNNNNNNNGC	6 cut(s)	191, 243, 607, 698, 1296, 1469
HpyF3I	CTNAG	7 cut(s)	203, 471, 531, 555, 874, 1034, 1423
HpySE526I	ACGT	2 cut(s)	513, 605
Hsp92I	GRCGYC	2 cut(s)	5, 69
Hsp92II	CATG	8 cut(s)	305, 500, 1159, 1164, 1172, 1324, 1735, 1859
HspAI	GCGC	3 cut(s)	69, 108, 601
KasI	GGCGCC	1 cut(s)	68
KflI	GGGWCCC	1 cut(s)	1770
Kpn2I	TCCGGA	1 cut(s)	1226
Ksp22I	TGATCA	3 cut(s)	973, 1642, 1849
LmnI	GCTCC	3 cut(s)	164, 362, 1334
Lsp1109I	GCAGC	4 cut(s)	938, 942, 1484, 1912
LweI	GCATC	5 cut(s)	127, 1160, 1760, 1780, 1912
MaeI	CTAG	3 cut(s)	444, 524, 1085
MaeII	ACGT	2 cut(s)	513, 605
MbiI	CCGCTC	1 cut(s)	288
MflI	RGATCY	3 cut(s)	463, 520, 1325
MlsI	TGGCCA	1 cut(s)	237
MluNI	TGGCCA	1 cut(s)	237
Mly113I	GGCGCC	1 cut(s)	69
MlyI	GAGTC	3 cut(s)	128, 170, 1038
MmeI	TCCRAC	5 cut(s)	111, 138, 168, 1312, 1864
Mox20I	TGGCCA	1 cut(s)	237
Mph1103I	ATGCAT	2 cut(s)	1652, 1838
MroI	TCCGGA	1 cut(s)	1226
MscI	TGGCCA	1 cut(s)	237
MseI	TTAA	5 cut(s)	126, 197, 420, 1596, 1712
Msp20I	TGGCCA	1 cut(s)	237
MspA1I	CMGCKG	2 cut(s)	617, 971
MspCI	CTTAAG	1 cut(s)	1595
MspI	CCGG	7 cut(s)	31, 63, 339, 360, 396, 1179, 1227
MspR9I	CCNGG	1 cut(s)	340
Mva1269I	GAATGC	2 cut(s)	1650, 1838
MwoI	GCNNNNNNNGC	6 cut(s)	191, 243, 607, 698, 1296, 1469
NarI	GGCGCC	1 cut(s)	69
NciI	CCSGG	1 cut(s)	340
NdeI	CATATG	2 cut(s)	685, 1846
NlaIII	CATG	8 cut(s)	305, 500, 1159, 1164, 1172, 1324, 1735, 1859
NlaIV	GGNNCC	8 cut(s)	70, 94, 263, 364, 647, 1018, 1771, 1772
NmuCI	GTSAC	8 cut(s)	187, 329, 425, 780, 809, 964, 1243, 1316
NsiI	ATGCAT	2 cut(s)	1652, 1838
NspI	RCATGY	1 cut(s)	1735
PagI	TCATGA	2 cut(s)	301, 496
PaqCI	CACCTGC	2 cut(s)	793, 1220
PciI	ACATGT	1 cut(s)	1731
PctI	GAATGC	2 cut(s)	1650, 1838
PfeI	GAWTC	3 cut(s)	905, 1066, 1280
Pfl23II	CGTACG	1 cut(s)	823
PinAI	ACCGGT	1 cut(s)	30
PkrI	GCNGC	5 cut(s)	68, 928, 957, 1474, 1927
PleI	GAGTC	3 cut(s)	127, 170, 1038
PluTI	GGCGCC	1 cut(s)	72
PpsI	GAGTC	3 cut(s)	127, 170, 1038
PpuMI	RGGWCCY	3 cut(s)	262, 1017, 1770
PscI	ACATGT	1 cut(s)	1731
PshAI	GACNNNNGTC	1 cut(s)	1732
PsiI	TTATAA	1 cut(s)	800
Psp5II	RGGWCCY	3 cut(s)	262, 1017, 1770
PspEI	GGTNACC	2 cut(s)	425, 809
PspLI	CGTACG	1 cut(s)	823
PspN4I	GGNNCC	8 cut(s)	70, 94, 263, 364, 647, 1018, 1771, 1772
PspPI	GGNCC	5 cut(s)	262, 308, 1017, 1543, 1770
PspPPI	RGGWCCY	3 cut(s)	262, 1017, 1770
PstI	CTGCAG	1 cut(s)	928
PstNI	CAGNNNCTG	1 cut(s)	1502
PsuI	RGATCY	3 cut(s)	463, 520, 1325
PvuII	CAGCTG	2 cut(s)	617, 971
RsaI	GTAC	7 cut(s)	156, 825, 1134, 1393, 1581, 1593, 1951
RsaNI	GTAC	7 cut(s)	155, 824, 1133, 1392, 1580, 1592, 1950
SaqAI	TTAA	5 cut(s)	126, 197, 420, 1596, 1712
SatI	GCNGC	5 cut(s)	67, 927, 956, 1473, 1926
Sau96I	GGNCC	5 cut(s)	262, 308, 1017, 1543, 1770
SchI	GAGTC	3 cut(s)	128, 170, 1038
ScrFI	CCNGG	1 cut(s)	340
SfaNI	GCATC	5 cut(s)	127, 1160, 1760, 1780, 1912
SfcI	CTRYAG	2 cut(s)	924, 1623
SfoI	GGCGCC	1 cut(s)	70
SinI	GGWCC	4 cut(s)	262, 1017, 1543, 1770
SmlI	CTYRAG	2 cut(s)	1397, 1595
SmoI	CTYRAG	2 cut(s)	1397, 1595
SsiI	CCGC	7 cut(s)	66, 286, 357, 489, 760, 1546, 1978
SspDI	GGCGCC	1 cut(s)	68
SspMI	CTAG	3 cut(s)	444, 524, 1085
StyD4I	CCNGG	1 cut(s)	338
StyI	CCWWGG	3 cut(s)	430, 753, 1300
TaiI	ACGT	2 cut(s)	516, 608
TaqI	TCGA	3 cut(s)	135, 1349, 1747
TatI	WGTACW	2 cut(s)	1591, 1949
TauI	GCSGC	1 cut(s)	69
TfiI	GAWTC	3 cut(s)	905, 1066, 1280
Tru1I	TTAA	5 cut(s)	126, 197, 420, 1596, 1712
Tru9I	TTAA	5 cut(s)	126, 197, 420, 1596, 1712
TscAI	CASTG	6 cut(s)	196, 939, 1381, 1555, 1921, 2024
TseFI	GTSAC	8 cut(s)	187, 329, 425, 780, 809, 964, 1243, 1316
TseI	GCWGC	4 cut(s)	926, 955, 1472, 1925
Tsp45I	GTSAC	8 cut(s)	187, 329, 425, 780, 809, 964, 1243, 1316
TspDTI	ATGAA	8 cut(s)	88, 446, 702, 738, 918, 1091, 1107, 1845
TspRI	CASTG	6 cut(s)	196, 939, 1381, 1555, 1921, 2024
Vha464I	CTTAAG	1 cut(s)	1595
VpaK11BI	GGWCC	4 cut(s)	262, 1017, 1543, 1770
XapI	RAATTY	6 cut(s)	218, 477, 828, 835, 1079, 1447
XbaI	TCTAGA	1 cut(s)	523
XceI	RCATGY	1 cut(s)	1735
XmiI	GTMKAC	1 cut(s)	2014
XspI	CTAG	3 cut(s)	444, 524, 1085
Zsp2I	ATGCAT	2 cut(s)	1652, 1838

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.