Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0010104

Physical Location & Seq

Genomic Coordinates Reverse (-)

54192146 .. 54197948

Gene Structure 5803 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0446200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGTCAGAAGCTGTCATGGCGGTAGTCAAACCTGAGATGAAGTCTTACATCTGGCTACAAACTGCTGATGGGTCAATCCAACAAGTAGAAGAAGAGGTTGCTATGTTTTGTCCCATGATCTGTCGAGAAATACTTCAGACAGGCATGGGATCGTCCAAAAACTATGCTATATCACTTCCTCAACGAGTTAACCCTGCCGTTTTGGGGTTAATACTTGACTACTGCCGGTTTCATCAAGTACCAGGTCGCTCTAATAAGGAACGCAAAACTTTTGATGAGAAATTTATTCGGATGGATACAAAGAAGTTATGCGAGTTGACATCAGCTGCTGACAGCCTACAATTGAAGCCTTTGGTTGATCTCACCAGCCGAGCACTTGCACGAATTATTGAAGGAAAAACTCCTGAAGAGATACGGGAGACATTTCATTTACCTGATGATCTCACAGAGGAGGAGAAGTTGGAACCTCTGAGAAACATAACCGATGATCCACGTATCCGGCTTCTTAATCGTCTATATGCAAGAAAGAGGAAAGAATTGAAAGAGAGAGAGAAACTGAAGAATGTTGAGGCGGAGGAGGAGCGTGTTGATCAGCGTTCCGTCGATGATCTCTTGACATTTATCAATGGTGGAAATGGAGATTCAAAGGGAGTTAAAACCAATAAGAATAAGAAGAAAAATCGAAGAAGAAAAGATCCACCAAAAGATTCTTCAAATAATGTCAATGGAAACCATAATAAGGAATCAGAAGCTCTTTCTTCTGCTTTCCACAATGAATCCCGACCTTCTAGCTCTTGCAACTTGCAAGATTGTACAGCTATTGAGTTTGATGATGGTGATGTTGACGATGATTTAGATCCTGCCATGAAGGAGCAGCTTGACAGGGAAGTGGAGGATTTTGCACGAAGATTAAATTCAGATTGGCCAGAAAGGATGCAGGAAATTTTATCCTTAGGCCAAGAAAGGAGACTTGCACCAATAAATATTAATGGAAATGGTTCTGCACGTAGATATACAAGTTTGGATCAGAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000462 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031974 GO:0031981 GO:0032040 GO:0032991 GO:0034388 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Utp13 WD40

Protein Analysis

344

Amino Acids

39.44

Weight (kDa)

5.7

Isoelectric Point (pI)

61.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Skp1	PF01466	116 - 153	1.5e-12	Skp1 family, dimerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0010104)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16750
fragaria_vesca	FvH4_7g34000 FvH4_7g34000
malus_domestica	MD01G1236400.v1.1 MD07G1309100.v1.1
prunus_persica	Prupe.2G326400_v2.0.a1 Prupe.2G326400_v2.0.a1
pyrus_communis	pycom01g24430 pycom07g28110
rosa_chinensis	RchiOBHm_Chr1g0384251
rosa_laevigata	RLG00000026054
rosa_multiflora	Rmu_sc0011271.1_g000002
rosa_roxburghii	Rroxscaffold_4G00276810
rosa_rugosa	Rorug01G0446100 Rorug01G0446200 Rorug01G0446200
rosa_samantha	Rh1AG471700 Rh1BG429400 Rh1CG442000 Rh1DG462100
rosa_wichuraiana	Rw1G040090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	20, 572
AclWI	GGATC	5 cut(s)	157, 482, 689, 851, 1032
AcoI	YGGCCR	1 cut(s)	923
AcsI	RAATTY	3 cut(s)	281, 913, 942
AcuI	CTGAAG	3 cut(s)	119, 426, 578
AfaI	GTAC	2 cut(s)	240, 814
AfiI	CCNNNNNNNGG	2 cut(s)	204, 739
AgsI	TTSAA	5 cut(s)	346, 392, 541, 645, 714
AjnI	CCWGG	1 cut(s)	241
AjuI	GAANNNNNNNTTGG	2 cut(s)	694, 726
AluBI	AGCT	6 cut(s)	11, 326, 752, 792, 818, 877
AluI	AGCT	6 cut(s)	11, 326, 752, 792, 818, 877
Alw21I	GWGCWC	1 cut(s)	376
Alw26I	GTCTC	2 cut(s)	413, 961
AlwI	GGATC	5 cut(s)	157, 482, 689, 851, 1032
AlwNI	CAGNNNCTG	2 cut(s)	11, 329
AoxI	GGCC	2 cut(s)	923, 955
ApeKI	GCWGC	2 cut(s)	326, 874
ApoI	RAATTY	3 cut(s)	281, 913, 942
AseI	ATTAAT	1 cut(s)	987
Asp700I	GAANNNNTTC	2 cut(s)	132, 997
AsuHPI	GGTGA	2 cut(s)	355, 848
AxyI	CCTNAGG	1 cut(s)	952
BalI	TGGCCA	1 cut(s)	925
Bbv12I	GWGCWC	1 cut(s)	376
BbvI	GCAGC	2 cut(s)	313, 886
BccI	CCATC	3 cut(s)	62, 286, 827
BceAI	ACGGC	1 cut(s)	182
BciT130I	CCWGG	1 cut(s)	243
BciVI	GTATCC	2 cut(s)	289, 506
BclI	TGATCA	1 cut(s)	589
BcoDI	GTCTC	2 cut(s)	413, 961
BfaI	CTAG	1 cut(s)	789
BfuI	GTATCC	2 cut(s)	289, 506
BisI	GCNGC	2 cut(s)	327, 875
BlsI	GCNGC	2 cut(s)	328, 876
Bme1390I	CCNGG	1 cut(s)	243
BmiI	GGNNCC	1 cut(s)	465
BmrFI	CCNGG	1 cut(s)	243
BmsI	GCATC	1 cut(s)	924
BsaAI	YACGTR	2 cut(s)	494, 1007
BsaBI	GATNNNNATC	1 cut(s)	855
BsaXI	ACNNNNNCTCC	2 cut(s)	443, 473
Bsc4I	CCNNNNNNNGG	2 cut(s)	204, 739
Bse118I	RCCGGY	1 cut(s)	225
Bse21I	CCTNAGG	1 cut(s)	952
Bse8I	GATNNNNATC	1 cut(s)	855
BseBI	CCWGG	1 cut(s)	243
BseGI	GGATG	2 cut(s)	297, 939
BseJI	GATNNNNATC	1 cut(s)	855
BseLI	CCNNNNNNNGG	2 cut(s)	204, 739
BseMII	CTCAG	2 cut(s)	24, 461
BseRI	GAGGAG	4 cut(s)	464, 467, 590, 593
BseXI	GCAGC	2 cut(s)	313, 886
BsgI	GTGCAG	1 cut(s)	987
BshFI	GGCC	2 cut(s)	925, 957
BsiHKAI	GWGCWC	1 cut(s)	376
BsiSI	CCGG	2 cut(s)	226, 499
BslFI	GGGAC	1 cut(s)	96
BslI	CCNNNNNNNGG	2 cut(s)	204, 739
BsmAI	GTCTC	2 cut(s)	413, 961
BsmFI	GGGAC	1 cut(s)	96
BsnI	GGCC	2 cut(s)	925, 957
Bsp1286I	GDGCHC	1 cut(s)	376
Bsp1407I	TGTACA	1 cut(s)	812
BspACI	CCGC	2 cut(s)	20, 572
BspANI	GGCC	2 cut(s)	925, 957
BspCNI	CTCAG	2 cut(s)	25, 462
BspLI	GGNNCC	1 cut(s)	465
BspPI	GGATC	5 cut(s)	157, 482, 689, 851, 1032
BsrFI	RCCGGY	1 cut(s)	225
BsrGI	TGTACA	1 cut(s)	812
BssAI	RCCGGY	1 cut(s)	225
Bst2UI	CCWGG	1 cut(s)	243
Bst6I	CTCTTC	2 cut(s)	87, 402
BstAUI	TGTACA	1 cut(s)	812
BstBAI	YACGTR	2 cut(s)	494, 1007
BstDEI	CTNAG	3 cut(s)	33, 470, 952
BstF5I	GGATG	2 cut(s)	297, 939
BstMAI	GTCTC	2 cut(s)	413, 961
BstMWI	GCNNNNNNNGC	1 cut(s)	17
BstNI	CCWGG	1 cut(s)	243
BstSCI	CCNGG	1 cut(s)	241
BstV1I	GCAGC	2 cut(s)	313, 886
BstX2I	RGATCY	2 cut(s)	694, 856
BstYI	RGATCY	2 cut(s)	694, 856
Bsu36I	CCTNAGG	1 cut(s)	952
BsuI	GTATCC	2 cut(s)	289, 506
BsuRI	GGCC	2 cut(s)	925, 957
BtsCI	GGATG	2 cut(s)	297, 939
CaiI	CAGNNNCTG	2 cut(s)	11, 329
Cfr10I	RCCGGY	1 cut(s)	225
CsiI	ACCWGGT	1 cut(s)	241
Csp6I	GTAC	2 cut(s)	239, 813
CviAII	CATG	4 cut(s)	16, 115, 145, 865
CviQI	GTAC	2 cut(s)	239, 813
DdeI	CTNAG	3 cut(s)	33, 470, 952
EaeI	YGGCCR	1 cut(s)	923
Eam1104I	CTCTTC	2 cut(s)	87, 402
EarI	CTCTTC	2 cut(s)	87, 402
EciI	GGCGGA	1 cut(s)	587
Eco57I	CTGAAG	3 cut(s)	119, 426, 578
Eco81I	CCTNAGG	1 cut(s)	952
EcoRII	CCWGG	1 cut(s)	241
FaeI	CATG	4 cut(s)	19, 118, 148, 868
FaqI	GGGAC	1 cut(s)	96
FatI	CATG	4 cut(s)	15, 114, 144, 864
FbaI	TGATCA	1 cut(s)	589
Fnu4HI	GCNGC	2 cut(s)	327, 875
FokI	GGATG	2 cut(s)	304, 946
Fsp4HI	GCNGC	2 cut(s)	327, 875
FspBI	CTAG	1 cut(s)	789
GluI	GCNGC	2 cut(s)	327, 875
HaeIII	GGCC	2 cut(s)	925, 957
HapII	CCGG	2 cut(s)	226, 499
Hin1II	CATG	4 cut(s)	19, 118, 148, 868
HincII	GTYRAC	3 cut(s)	190, 318, 844
HindII	GTYRAC	3 cut(s)	190, 318, 844
HinfI	GANTC	4 cut(s)	641, 707, 743, 776
HpaI	GTTAAC	1 cut(s)	190
HpaII	CCGG	2 cut(s)	226, 499
HphI	GGTGA	2 cut(s)	355, 848
Hpy166II	GTNNAC	3 cut(s)	190, 318, 844
Hpy188I	TCNGA	7 cut(s)	7, 138, 291, 471, 748, 919, 1029
Hpy188III	TCNNGA	4 cut(s)	125, 404, 613, 780
Hpy8I	GTNNAC	3 cut(s)	190, 318, 844
Hpy99I	CGWCG	1 cut(s)	605
HpyAV	CCTTC	3 cut(s)	386, 795, 862
HpyCH4IV	ACGT	2 cut(s)	493, 1006
HpyCH4V	TGCA	8 cut(s)	380, 521, 798, 805, 902, 937, 974, 1004
HpyF10VI	GCNNNNNNNGC	1 cut(s)	17
HpyF3I	CTNAG	3 cut(s)	33, 470, 952
HpySE526I	ACGT	2 cut(s)	493, 1006
Hsp92II	CATG	4 cut(s)	19, 118, 148, 868
Ksp22I	TGATCA	1 cut(s)	589
KspAI	GTTAAC	1 cut(s)	190
LmnI	GCTCC	2 cut(s)	580, 871
Lsp1109I	GCAGC	2 cut(s)	313, 886
LweI	GCATC	1 cut(s)	924
MabI	ACCWGGT	1 cut(s)	241
MaeI	CTAG	1 cut(s)	789
MaeII	ACGT	2 cut(s)	493, 1006
MfeI	CAATTG	1 cut(s)	341
MflI	RGATCY	2 cut(s)	694, 856
MhlI	GDGCHC	1 cut(s)	376
MlsI	TGGCCA	1 cut(s)	925
MluCI	AATT	6 cut(s)	281, 341, 384, 536, 913, 942
MluNI	TGGCCA	1 cut(s)	925
MmeI	TCCRAC	2 cut(s)	103, 441
Mox20I	TGGCCA	1 cut(s)	925
MroXI	GAANNNNTTC	2 cut(s)	132, 997
MscI	TGGCCA	1 cut(s)	925
MseI	TTAA	6 cut(s)	189, 209, 507, 654, 911, 987
Msp20I	TGGCCA	1 cut(s)	925
MspA1I	CMGCKG	1 cut(s)	326
MspI	CCGG	2 cut(s)	226, 499
MspR9I	CCNGG	1 cut(s)	243
MunI	CAATTG	1 cut(s)	341
MvaI	CCWGG	1 cut(s)	243
MwoI	GCNNNNNNNGC	1 cut(s)	17
NlaIII	CATG	4 cut(s)	19, 118, 148, 868
NlaIV	GGNNCC	1 cut(s)	465
NmeAIII	GCCGAG	1 cut(s)	395
PdmI	GAANNNNTTC	2 cut(s)	132, 997
PfeI	GAWTC	4 cut(s)	641, 707, 743, 776
PkrI	GCNGC	2 cut(s)	328, 876
Ppu21I	YACGTR	2 cut(s)	494, 1007
PshBI	ATTAAT	1 cut(s)	987
Psp6I	CCWGG	1 cut(s)	241
PspGI	CCWGG	1 cut(s)	241
PspN4I	GGNNCC	1 cut(s)	465
PstNI	CAGNNNCTG	2 cut(s)	11, 329
PsuI	RGATCY	2 cut(s)	694, 856
PvuII	CAGCTG	1 cut(s)	326
RsaI	GTAC	2 cut(s)	240, 814
RsaNI	GTAC	2 cut(s)	239, 813
SaqAI	TTAA	6 cut(s)	189, 209, 507, 654, 911, 987
SatI	GCNGC	2 cut(s)	327, 875
ScrFI	CCNGG	1 cut(s)	243
SduI	GDGCHC	1 cut(s)	376
SexAI	ACCWGGT	1 cut(s)	241
SfaNI	GCATC	1 cut(s)	924
Sse9I	AATT	6 cut(s)	281, 341, 384, 536, 913, 942
SsiI	CCGC	2 cut(s)	20, 572
SspI	AATATT	1 cut(s)	985
SspMI	CTAG	1 cut(s)	789
StyD4I	CCNGG	1 cut(s)	241
TaiI	ACGT	2 cut(s)	496, 1009
TaqI	TCGA	3 cut(s)	124, 603, 682
TasI	AATT	6 cut(s)	281, 341, 384, 536, 913, 942
TatI	WGTACW	1 cut(s)	812
TfiI	GAWTC	4 cut(s)	641, 707, 743, 776
Tru1I	TTAA	6 cut(s)	189, 209, 507, 654, 911, 987
Tru9I	TTAA	6 cut(s)	189, 209, 507, 654, 911, 987
TseI	GCWGC	2 cut(s)	326, 874
TspDTI	ATGAA	5 cut(s)	53, 221, 416, 789, 881
TspGWI	ACGGA	1 cut(s)	589
VspI	ATTAAT	1 cut(s)	987
XapI	RAATTY	3 cut(s)	281, 913, 942
XmnI	GAANNNNTTC	2 cut(s)	132, 997
XspI	CTAG	1 cut(s)	789

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.