AT5G17870

50S ribosomal protein 6

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0005750
Physical Location & Seq
Forward (+)
5907589 .. 5908464
876 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G17870.1

Sequence Viewer

Length: 321 bp
ATGTCTGTGTCAGCGATCTTTGGTACCGGAATCGTCACCGTTGCTGCTTCTCCGGTTCTCCGCCAATTTCAAGTTCCAAAATTGGGTAATGGAGGAGGATTAGGGATGGTGATAGAGTGTTCGTCGAGGCCACAGAAGAAATCGACGGCTCATCACAGGAAGACGAGGCCGAAGAAGACTCAGCCTTGGGACATTAAGAGAAAGCCTACTGTTTACGCTCCTCTTCCTCCTCTTCCGGCGGAATGGAGTCCGTTCACTCTCGCTTCTGACGACGGTGGTGCTGCCACTGCTGCGGGAGATTTGGTTTCAGGCGCTGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF5323

Protein Analysis

106

Amino Acids

11.04

Weight (kDa)

10.1

Isoelectric Point (pI)

53.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF5323 PF17257 32 - 90 3.5e-36 Family of unknown function (DUF5323)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 23
AccB1I GGYRCC 1 cut(s) 23
AciI CCGC 3 cut(s) 61, 239, 293
AfaI GTAC 1 cut(s) 25
AfiI CCNNNNNNNGG 1 cut(s) 83
AgsI TTSAA 1 cut(s) 71
AjuI GAANNNNNNNTTGG 2 cut(s) 57, 89
AlwNI CAGNNNCTG 1 cut(s) 314
AoxI GGCC 2 cut(s) 128, 167
ApeKI GCWGC 4 cut(s) 44, 281, 290, 314
Asp718I GGTACC 1 cut(s) 23
AspLEI GCGC 1 cut(s) 314
AsuHPI GGTGA 2 cut(s) 28, 121
BanI GGYRCC 1 cut(s) 23
BbsI GAAGAC 2 cut(s) 167, 182
BbvI GCAGC 4 cut(s) 31, 268, 277, 301
BccI CCATC 1 cut(s) 100
BceAI ACGGC 1 cut(s) 162
BcgI CGANNNNNNTGC 2 cut(s) 260, 294
BfaI CTAG 1 cut(s) 319
BfoI RGCGCY 1 cut(s) 315
BisI GCNGC 4 cut(s) 45, 282, 291, 315
BlsI GCNGC 4 cut(s) 46, 283, 292, 316
BmiI GGNNCC 1 cut(s) 25
BpiI GAAGAC 2 cut(s) 167, 182
BsaJI CCNNGG 1 cut(s) 185
BsaWI WCCGGW 2 cut(s) 26, 52
BsaXI ACNNNNNCTCC 2 cut(s) 288, 318
Bsc4I CCNNNNNNNGG 1 cut(s) 83
BseDI CCNNGG 1 cut(s) 185
BseGI GGATG 1 cut(s) 111
BseLI CCNNNNNNNGG 1 cut(s) 83
BseMII CTCAG 1 cut(s) 194
BseRI GAGGAG 3 cut(s) 108, 210, 219
BseXI GCAGC 4 cut(s) 31, 268, 277, 301
BshFI GGCC 2 cut(s) 130, 169
BshNI GGYRCC 1 cut(s) 23
BsiSI CCGG 3 cut(s) 27, 53, 236
BslFI GGGAC 1 cut(s) 203
BslI CCNNNNNNNGG 1 cut(s) 83
BsmFI GGGAC 1 cut(s) 203
BsnI GGCC 2 cut(s) 130, 169
Bsp143I GATC 1 cut(s) 15
BspACI CCGC 3 cut(s) 61, 239, 293
BspANI GGCC 2 cut(s) 130, 169
BspCNI CTCAG 1 cut(s) 193
BspLI GGNNCC 1 cut(s) 25
BspT107I GGYRCC 1 cut(s) 23
BssECI CCNNGG 1 cut(s) 185
BssMI GATC 1 cut(s) 15
BssT1I CCWWGG 1 cut(s) 185
Bst4CI ACNGT 3 cut(s) 40, 211, 275
Bst6I CTCTTC 2 cut(s) 228, 237
BstDEI CTNAG 1 cut(s) 180
BstF5I GGATG 1 cut(s) 111
BstH2I RGCGCY 1 cut(s) 315
BstHHI GCGC 1 cut(s) 314
BstKTI GATC 1 cut(s) 18
BstMBI GATC 1 cut(s) 15
BstMWI GCNNNNNNNGC 2 cut(s) 287, 290
BstV1I GCAGC 4 cut(s) 31, 268, 277, 301
BstV2I GAAGAC 2 cut(s) 167, 182
BsuRI GGCC 2 cut(s) 130, 169
BtsCI GGATG 1 cut(s) 111
BtsI GCAGTG 1 cut(s) 285
BtsIMutI CAGTG 1 cut(s) 285
CaiI CAGNNNCTG 1 cut(s) 314
CfoI GCGC 1 cut(s) 314
Csp6I GTAC 1 cut(s) 24
CviJI RGCY 5 cut(s) 130, 149, 169, 184, 205
CviKI_1 RGCY 5 cut(s) 130, 149, 169, 184, 205
CviQI GTAC 1 cut(s) 24
DdeI CTNAG 1 cut(s) 180
DpnI GATC 1 cut(s) 17
DpnII GATC 1 cut(s) 15
Eam1104I CTCTTC 2 cut(s) 228, 237
EarI CTCTTC 2 cut(s) 228, 237
EciI GGCGGA 2 cut(s) 50, 254
Eco130I CCWWGG 1 cut(s) 185
EcoT14I CCWWGG 1 cut(s) 185
ErhI CCWWGG 1 cut(s) 185
FaqI GGGAC 1 cut(s) 203
FauI CCCGC 1 cut(s) 286
Fnu4HI GCNGC 4 cut(s) 45, 282, 291, 315
FokI GGATG 1 cut(s) 118
Fsp4HI GCNGC 4 cut(s) 45, 282, 291, 315
FspBI CTAG 1 cut(s) 319
GlaI GCGC 1 cut(s) 313
GluI GCNGC 4 cut(s) 45, 282, 291, 315
HaeII RGCGCY 1 cut(s) 315
HaeIII GGCC 2 cut(s) 130, 169
HapII CCGG 3 cut(s) 27, 53, 236
HhaI GCGC 1 cut(s) 314
Hin6I GCGC 1 cut(s) 312
HinP1I GCGC 1 cut(s) 312
HinfI GANTC 3 cut(s) 30, 178, 247
HpaII CCGG 3 cut(s) 27, 53, 236
HphI GGTGA 2 cut(s) 28, 121
Hpy166II GTNNAC 2 cut(s) 214, 255
Hpy188I TCNGA 1 cut(s) 268
Hpy8I GTNNAC 2 cut(s) 214, 255
Hpy99I CGWCG 3 cut(s) 127, 148, 275
HpyCH4III ACNGT 3 cut(s) 40, 211, 275
HpyF10VI GCNNNNNNNGC 2 cut(s) 287, 290
HpyF3I CTNAG 1 cut(s) 180
HspAI GCGC 1 cut(s) 312
KpnI GGTACC 1 cut(s) 27
Kzo9I GATC 1 cut(s) 15
LmnI GCTCC 1 cut(s) 223
LpnPI CCDG 5 cut(s) 40, 66, 142, 249, 294
Lsp1109I GCAGC 4 cut(s) 31, 268, 277, 301
MaeI CTAG 1 cut(s) 319
MaeIII GTNAC 1 cut(s) 34
MalI GATC 1 cut(s) 17
MboI GATC 1 cut(s) 15
MboII GAAGA 6 cut(s) 148, 172, 184, 187, 215, 224
MluCI AATT 2 cut(s) 65, 80
MlyI GAGTC 2 cut(s) 172, 256
MnlI CCTC 7 cut(s) 86, 89, 120, 159, 231, 237, 240
MseI TTAA 1 cut(s) 195
MspI CCGG 3 cut(s) 27, 53, 236
MwoI GCNNNNNNNGC 2 cut(s) 287, 290
NdeII GATC 1 cut(s) 15
NlaIV GGNNCC 1 cut(s) 25
NmuCI GTSAC 1 cut(s) 34
PcsI WCGNNNNNNNCGW 1 cut(s) 267
PfeI GAWTC 1 cut(s) 30
PkrI GCNGC 4 cut(s) 46, 283, 292, 316
PleI GAGTC 2 cut(s) 172, 255
PpsI GAGTC 2 cut(s) 172, 255
PspN4I GGNNCC 1 cut(s) 25
PstNI CAGNNNCTG 1 cut(s) 314
RsaI GTAC 1 cut(s) 25
RsaNI GTAC 1 cut(s) 24
SaqAI TTAA 1 cut(s) 195
SatI GCNGC 4 cut(s) 45, 282, 291, 315
Sau3AI GATC 1 cut(s) 15
SchI GAGTC 2 cut(s) 172, 256
Sse9I AATT 2 cut(s) 65, 80
SsiI CCGC 3 cut(s) 61, 239, 293
SspMI CTAG 1 cut(s) 319
StyI CCWWGG 1 cut(s) 185
TaaI ACNGT 3 cut(s) 40, 211, 275
TaqI TCGA 2 cut(s) 125, 143
TasI AATT 2 cut(s) 65, 80
TfiI GAWTC 1 cut(s) 30
Tru1I TTAA 1 cut(s) 195
Tru9I TTAA 1 cut(s) 195
TscAI CASTG 1 cut(s) 292
TseFI GTSAC 1 cut(s) 34
TseI GCWGC 4 cut(s) 44, 281, 290, 314
Tsp45I GTSAC 1 cut(s) 34
TspGWI ACGGA 1 cut(s) 240
TspRI CASTG 1 cut(s) 292
XspI CTAG 1 cut(s) 319
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.