RchiOBHm_Chr7g0232161

50S ribosomal protein 6

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0005750
Physical Location & Seq
Forward (+)
56096829 .. 56097469
641 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20808

Sequence Viewer

Length: 348 bp
ATGTCAGTCTCCGCTGTGATGTTGGGTCCTCAGCTCCTCTCCATGCCCGTCCCTCTCCGAAACCCCTCCGCAACGGCGTCGTTCGGAGTCACCCAGATGGCTCCACCACTCTGCGGTGGTTCCGGTGGTGGGTTGGTGATAGAATGCTCGTCGAGGCCGCAGAAGAAGGCGACGGCGCACCACCGCAAGACGCGGCCACGCAAAACGGCTGCGTGGGACGTGAAACGCAAGCCGACTGTGTACGCTCCTCTGCCGCCTCTCCCCGCCGATTGGGTTTTCCTCGCTTCTTCTGATGATGCTTCTGCTGCAGACCCTTCTTCTCCGCAAGCACCGCCCACTGTTCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF5323

Protein Analysis

115

Amino Acids

12.0

Weight (kDa)

9.92

Isoelectric Point (pI)

70.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF5323 PF17257 41 - 100 2.1e-37 Family of unknown function (DUF5323)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 193
AcoI YGGCCR 1 cut(s) 194
AcyI GRCGYC 1 cut(s) 77
AfaI GTAC 1 cut(s) 242
AfiI CCNNNNNNNGG 3 cut(s) 113, 129, 270
AjiI CACGTC 1 cut(s) 220
AluBI AGCT 1 cut(s) 34
AluI AGCT 1 cut(s) 34
Alw26I GTCTC 1 cut(s) 13
AoxI GGCC 2 cut(s) 155, 194
ApeKI GCWGC 2 cut(s) 209, 305
AspLEI GCGC 1 cut(s) 178
AspS9I GGNCC 1 cut(s) 26
AsuHPI GGTGA 2 cut(s) 82, 148
AvaII GGWCC 1 cut(s) 26
BbvCI CCTCAGC 1 cut(s) 30
BbvI GCAGC 2 cut(s) 196, 292
BccI CCATC 1 cut(s) 91
BceAI ACGGC 3 cut(s) 90, 189, 222
BcgI CGANNNNNNTGC 2 cut(s) 60, 94
BcoDI GTCTC 1 cut(s) 13
BfmI CTRYAG 1 cut(s) 306
BisI GCNGC 5 cut(s) 158, 194, 210, 254, 306
BlsI GCNGC 5 cut(s) 159, 195, 211, 255, 307
Bme18I GGWCC 1 cut(s) 26
BmgBI CACGTC 1 cut(s) 220
BmgT120I GGNCC 1 cut(s) 26
BmiI GGNNCC 3 cut(s) 27, 102, 121
BmsI GCATC 1 cut(s) 286
Bpu10I CCTNAGC 1 cut(s) 30
BsaHI GRCGYC 1 cut(s) 77
BsaWI WCCGGW 1 cut(s) 122
Bsc4I CCNNNNNNNGG 3 cut(s) 113, 129, 270
BseLI CCNNNNNNNGG 3 cut(s) 113, 129, 270
BseMII CTCAG 1 cut(s) 44
BseRI GAGGAG 2 cut(s) 26, 237
BseXI GCAGC 2 cut(s) 196, 292
Bsh1236I CGCG 1 cut(s) 193
BshFI GGCC 2 cut(s) 157, 196
BsiSI CCGG 1 cut(s) 123
BslFI GGGAC 2 cut(s) 35, 230
BslI CCNNNNNNNGG 3 cut(s) 113, 129, 270
BsmAI GTCTC 1 cut(s) 13
BsmFI GGGAC 2 cut(s) 35, 230
BsmI GAATGC 1 cut(s) 149
BsnI GGCC 2 cut(s) 157, 196
BspANI GGCC 2 cut(s) 157, 196
BspCNI CTCAG 1 cut(s) 43
BspFNI CGCG 1 cut(s) 193
BspLI GGNNCC 3 cut(s) 27, 102, 121
BspMAI CTGCAG 1 cut(s) 310
BssNI GRCGYC 1 cut(s) 77
Bst4CI ACNGT 2 cut(s) 238, 340
BstACI GRCGYC 1 cut(s) 77
BstC8I GCNNGC 2 cut(s) 230, 327
BstDEI CTNAG 1 cut(s) 30
BstFNI CGCG 1 cut(s) 193
BstHHI GCGC 1 cut(s) 178
BstMAI GTCTC 1 cut(s) 13
BstMWI GCNNNNNNNGC 2 cut(s) 305, 331
BstSFI CTRYAG 1 cut(s) 306
BstUI CGCG 1 cut(s) 193
BstV1I GCAGC 2 cut(s) 196, 292
BsuRI GGCC 2 cut(s) 157, 196
BtrI CACGTC 1 cut(s) 220
BtsIMutI CAGTG 1 cut(s) 336
Cac8I GCNNGC 2 cut(s) 230, 327
CfoI GCGC 1 cut(s) 178
Cfr13I GGNCC 1 cut(s) 26
CseI GACGC 2 cut(s) 66, 199
Csp6I GTAC 1 cut(s) 241
CviAII CATG 1 cut(s) 43
CviJI RGCY 6 cut(s) 34, 101, 157, 196, 209, 232
CviKI_1 RGCY 6 cut(s) 34, 101, 157, 196, 209, 232
CviQI GTAC 1 cut(s) 241
DdeI CTNAG 1 cut(s) 30
EaeI YGGCCR 1 cut(s) 194
Eco47I GGWCC 1 cut(s) 26
EcoO109I RGGNCCY 1 cut(s) 26
FaeI CATG 1 cut(s) 46
FaiI YATR 1 cut(s) 44
FaqI GGGAC 2 cut(s) 35, 230
FatI CATG 1 cut(s) 42
FauI CCCGC 1 cut(s) 271
Fnu4HI GCNGC 5 cut(s) 158, 194, 210, 254, 306
Fsp4HI GCNGC 5 cut(s) 158, 194, 210, 254, 306
GlaI GCGC 1 cut(s) 177
GluI GCNGC 5 cut(s) 158, 194, 210, 254, 306
HaeIII GGCC 2 cut(s) 157, 196
HapII CCGG 1 cut(s) 123
HgaI GACGC 2 cut(s) 66, 199
HhaI GCGC 1 cut(s) 178
Hin1I GRCGYC 1 cut(s) 77
Hin1II CATG 1 cut(s) 46
Hin6I GCGC 1 cut(s) 176
HinP1I GCGC 1 cut(s) 176
HinfI GANTC 1 cut(s) 87
HpaII CCGG 1 cut(s) 123
HphI GGTGA 2 cut(s) 82, 148
Hpy166II GTNNAC 1 cut(s) 241
Hpy188I TCNGA 3 cut(s) 59, 86, 292
Hpy8I GTNNAC 1 cut(s) 241
Hpy99I CGWCG 3 cut(s) 82, 154, 175
HpyAV CCTTC 2 cut(s) 160, 324
HpyCH4III ACNGT 2 cut(s) 238, 340
HpyCH4IV ACGT 1 cut(s) 219
HpyCH4V TGCA 1 cut(s) 308
HpyF10VI GCNNNNNNNGC 2 cut(s) 305, 331
HpyF3I CTNAG 1 cut(s) 30
HpySE526I ACGT 1 cut(s) 219
Hsp92I GRCGYC 1 cut(s) 77
Hsp92II CATG 1 cut(s) 46
HspAI GCGC 1 cut(s) 176
LmnI GCTCC 3 cut(s) 39, 106, 250
LpnPI CCDG 2 cut(s) 107, 136
Lsp1109I GCAGC 2 cut(s) 196, 292
LweI GCATC 1 cut(s) 286
MaeII ACGT 1 cut(s) 219
MaeIII GTNAC 1 cut(s) 88
MboII GAAGA 3 cut(s) 175, 279, 309
MlyI GAGTC 1 cut(s) 96
MnlI CCTC 8 cut(s) 39, 47, 63, 76, 147, 258, 267, 290
MslI CAYNNNNRTG 1 cut(s) 95
MspA1I CMGCKG 1 cut(s) 14
MspI CCGG 1 cut(s) 123
Mva1269I GAATGC 1 cut(s) 149
MvnI CGCG 1 cut(s) 193
MwoI GCNNNNNNNGC 2 cut(s) 305, 331
NlaIII CATG 1 cut(s) 46
NlaIV GGNNCC 3 cut(s) 27, 102, 121
NmuCI GTSAC 1 cut(s) 88
PctI GAATGC 1 cut(s) 149
PkrI GCNGC 5 cut(s) 159, 195, 211, 255, 307
PleI GAGTC 1 cut(s) 95
PpsI GAGTC 1 cut(s) 95
PpuMI RGGWCCY 1 cut(s) 26
Psp5II RGGWCCY 1 cut(s) 26
PspN4I GGNNCC 3 cut(s) 27, 102, 121
PspPI GGNCC 1 cut(s) 26
PspPPI RGGWCCY 1 cut(s) 26
PstI CTGCAG 1 cut(s) 310
RsaI GTAC 1 cut(s) 242
RsaNI GTAC 1 cut(s) 241
RseI CAYNNNNRTG 1 cut(s) 95
SatI GCNGC 5 cut(s) 158, 194, 210, 254, 306
Sau96I GGNCC 1 cut(s) 26
SchI GAGTC 1 cut(s) 96
SetI ASST 2 cut(s) 36, 222
SfaNI GCATC 1 cut(s) 286
SfcI CTRYAG 1 cut(s) 306
SinI GGWCC 1 cut(s) 26
SmiMI CAYNNNNRTG 1 cut(s) 95
TaaI ACNGT 2 cut(s) 238, 340
TaiI ACGT 1 cut(s) 222
TaqI TCGA 1 cut(s) 152
TauI GCSGC 3 cut(s) 160, 196, 256
TscAI CASTG 1 cut(s) 343
TseFI GTSAC 1 cut(s) 88
TseI GCWGC 2 cut(s) 209, 305
Tsp45I GTSAC 1 cut(s) 88
TspRI CASTG 1 cut(s) 343
VpaK11BI GGWCC 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.