Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0005750

Physical Location & Seq

Genomic Coordinates Reverse (-)

44415525 .. 44415863

Gene Structure 339 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G543500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGTCAGTTTCAGCTGTGTTGGGGCCTCAATTGGTGGCTGTGGGTGTGCCCGTGAAGAACCCATCTGCGACGGCGTCGTTTGGGGTCCCAAAGACATCCCCATGGCGCGGCTCAGTTGGTGGAGGTACTGGGTTGATGATTGAATGTTCGTCGAGGCCACAGAAGAAGGCCACTGCTCATCACAGGAAGACTCGGCCTCGCAAAACGCAGCCATGGGACGTGAAACGCAAGCCCACTGTGTACACTCCTCTGCCTCCTCTCCCTGCCGACTGGACATTGGTCTCTTCTGCAGATGAAGCTTCATCTTCTTCCCCACAAGAGCCACCCACTACTGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF5323

Protein Analysis

113

Amino Acids

11.84

Weight (kDa)

10.1

Isoelectric Point (pI)

63.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005750)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17870 AT5G17870
fragaria_vesca	FvH4_5g33440
malus_domestica	MD08G1211600.v1.1 MD15G1394500.v1.1
prunus_persica	Prupe.1G543500_v2.0.a1 Prupe.3G080900_v2.0.a1 Prupe.8G111300_v2.0.a1 Prupe.8G111300_v2.0.a1 Prupe.8G111300_v2.0.a1 Prupe.8G111300_v2.0.a1 Prupe.8G111300_v2.0.a1 Prupe.8G111300_v2.0.a1 Prupe.8G111300_v2.0.a1 Prupe.8G111300_v2.0.a1 Prupe.8G111300_v2.0.a1
pyrus_communis	pycom08g18230
rosa_chinensis	RchiOBHm_Chr7g0232161
rosa_laevigata	RLG00000001384
rosa_multiflora	Rmu_sc0000616.1_g000018 Rmu_sc0004780.1_g000006
rosa_roxburghii	Rroxscaffold_3G00228720
rosa_rugosa	Rorug07G0269900
rosa_samantha	Rh7AG424500 Rh7BG398600 Rh7CG444800 Rh7DG416500
rosa_wichuraiana	Rw7G035110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	108
AciI	CCGC	1 cut(s)	108
AcyI	GRCGYC	1 cut(s)	74
AfaI	GTAC	2 cut(s)	127, 242
AfiI	CCNNNNNNNGG	1 cut(s)	107
AgsI	TTSAA	1 cut(s)	143
AjiI	CACGTC	1 cut(s)	220
AluBI	AGCT	2 cut(s)	14, 299
AluI	AGCT	2 cut(s)	14, 299
Alw26I	GTCTC	1 cut(s)	286
AoxI	GGCC	4 cut(s)	23, 155, 168, 194
ApeKI	GCWGC	1 cut(s)	208
AspLEI	GCGC	1 cut(s)	108
AspS9I	GGNCC	2 cut(s)	23, 85
AvaII	GGWCC	1 cut(s)	85
BaeGI	GKGCMC	1 cut(s)	51
BbsI	GAAGAC	1 cut(s)	194
BbvI	GCAGC	1 cut(s)	220
BccI	CCATC	1 cut(s)	70
BceAI	ACGGC	1 cut(s)	87
BcoDI	GTCTC	1 cut(s)	286
BfmI	CTRYAG	1 cut(s)	288
BisI	GCNGC	2 cut(s)	109, 209
BlsI	GCNGC	2 cut(s)	110, 210
Bme18I	GGWCC	1 cut(s)	85
BmgBI	CACGTC	1 cut(s)	220
BmgT120I	GGNCC	2 cut(s)	23, 85
BmiI	GGNNCC	3 cut(s)	24, 86, 87
BmrI	ACTGGG	1 cut(s)	138
BmuI	ACTGGG	1 cut(s)	138
BoxI	GACNNNNGTC	1 cut(s)	278
BpiI	GAAGAC	1 cut(s)	194
BsaHI	GRCGYC	1 cut(s)	74
BsaI	GGTCTC	1 cut(s)	286
BsaJI	CCNNGG	2 cut(s)	101, 212
Bsc4I	CCNNNNNNNGG	1 cut(s)	107
Bse1I	ACTGG	2 cut(s)	133, 275
BseDI	CCNNGG	2 cut(s)	101, 212
BseGI	GGATG	1 cut(s)	95
BseLI	CCNNNNNNNGG	1 cut(s)	107
BseMII	CTCAG	2 cut(s)	126, 324
BseNI	ACTGG	2 cut(s)	133, 275
BseRI	GAGGAG	2 cut(s)	237, 246
BseSI	GKGCMC	1 cut(s)	51
BseXI	GCAGC	1 cut(s)	220
Bsh1236I	CGCG	1 cut(s)	108
BshFI	GGCC	4 cut(s)	25, 157, 170, 196
BslFI	GGGAC	2 cut(s)	71, 230
BslI	CCNNNNNNNGG	1 cut(s)	107
BsmAI	GTCTC	1 cut(s)	286
BsmFI	GGGAC	2 cut(s)	71, 230
BsnI	GGCC	4 cut(s)	25, 157, 170, 196
Bso31I	GGTCTC	1 cut(s)	286
Bsp1286I	GDGCHC	1 cut(s)	51
Bsp1407I	TGTACA	1 cut(s)	240
Bsp19I	CCATGG	2 cut(s)	101, 212
BspACI	CCGC	1 cut(s)	108
BspANI	GGCC	4 cut(s)	25, 157, 170, 196
BspCNI	CTCAG	2 cut(s)	125, 325
BspFNI	CGCG	1 cut(s)	108
BspLI	GGNNCC	3 cut(s)	24, 86, 87
BspMAI	CTGCAG	1 cut(s)	292
BspTNI	GGTCTC	1 cut(s)	286
BsrGI	TGTACA	1 cut(s)	240
BsrI	ACTGG	2 cut(s)	133, 275
BssECI	CCNNGG	2 cut(s)	101, 212
BssNI	GRCGYC	1 cut(s)	74
BssT1I	CCWWGG	2 cut(s)	101, 212
Bst4CI	ACNGT	1 cut(s)	238
Bst6I	CTCTTC	1 cut(s)	289
BstACI	GRCGYC	1 cut(s)	74
BstAUI	TGTACA	1 cut(s)	240
BstC8I	GCNNGC	1 cut(s)	230
BstDEI	CTNAG	2 cut(s)	112, 333
BstDSI	CCRYGG	2 cut(s)	101, 212
BstF5I	GGATG	1 cut(s)	95
BstFNI	CGCG	1 cut(s)	108
BstHHI	GCGC	1 cut(s)	108
BstMAI	GTCTC	1 cut(s)	286
BstMWI	GCNNNNNNNGC	1 cut(s)	296
BstPAI	GACNNNNGTC	1 cut(s)	278
BstSFI	CTRYAG	1 cut(s)	288
BstSLI	GKGCMC	1 cut(s)	51
BstUI	CGCG	1 cut(s)	108
BstV1I	GCAGC	1 cut(s)	220
BstV2I	GAAGAC	1 cut(s)	194
BsuRI	GGCC	4 cut(s)	25, 157, 170, 196
BtgI	CCRYGG	2 cut(s)	101, 212
BtrI	CACGTC	1 cut(s)	220
BtsCI	GGATG	1 cut(s)	95
BtsI	GCAGTG	1 cut(s)	171
BtsIMutI	CAGTG	2 cut(s)	171, 234
Cac8I	GCNNGC	1 cut(s)	230
CfoI	GCGC	1 cut(s)	108
Cfr13I	GGNCC	2 cut(s)	23, 85
CseI	GACGC	1 cut(s)	63
Csp6I	GTAC	2 cut(s)	126, 241
CviAII	CATG	2 cut(s)	102, 213
CviQI	GTAC	2 cut(s)	126, 241
DdeI	CTNAG	2 cut(s)	112, 333
Eam1104I	CTCTTC	1 cut(s)	289
EarI	CTCTTC	1 cut(s)	289
Eco130I	CCWWGG	2 cut(s)	101, 212
Eco31I	GGTCTC	1 cut(s)	286
Eco47I	GGWCC	1 cut(s)	85
EcoO109I	RGGNCCY	2 cut(s)	23, 85
EcoT14I	CCWWGG	2 cut(s)	101, 212
ErhI	CCWWGG	2 cut(s)	101, 212
FaeI	CATG	2 cut(s)	105, 216
FaiI	YATR	2 cut(s)	103, 214
FaqI	GGGAC	2 cut(s)	71, 230
FatI	CATG	2 cut(s)	101, 212
Fnu4HI	GCNGC	2 cut(s)	109, 209
FokI	GGATG	1 cut(s)	82
Fsp4HI	GCNGC	2 cut(s)	109, 209
GlaI	GCGC	1 cut(s)	107
GluI	GCNGC	2 cut(s)	109, 209
HaeIII	GGCC	4 cut(s)	25, 157, 170, 196
HgaI	GACGC	1 cut(s)	63
HhaI	GCGC	1 cut(s)	108
Hin1I	GRCGYC	1 cut(s)	74
Hin1II	CATG	2 cut(s)	105, 216
Hin6I	GCGC	1 cut(s)	106
HinP1I	GCGC	1 cut(s)	106
HindIII	AAGCTT	1 cut(s)	297
HinfI	GANTC	1 cut(s)	190
Hpy166II	GTNNAC	2 cut(s)	241, 243
Hpy8I	GTNNAC	2 cut(s)	241, 243
Hpy99I	CGWCG	3 cut(s)	73, 79, 154
HpyAV	CCTTC	1 cut(s)	160
HpyCH4III	ACNGT	1 cut(s)	238
HpyCH4IV	ACGT	1 cut(s)	219
HpyCH4V	TGCA	1 cut(s)	290
HpyF10VI	GCNNNNNNNGC	1 cut(s)	296
HpyF3I	CTNAG	2 cut(s)	112, 333
HpySE526I	ACGT	1 cut(s)	219
Hsp92I	GRCGYC	1 cut(s)	74
Hsp92II	CATG	2 cut(s)	105, 216
HspAI	GCGC	1 cut(s)	106
KflI	GGGWCCC	1 cut(s)	85
LpnPI	CCDG	4 cut(s)	114, 169, 256, 276
Lsp1109I	GCAGC	1 cut(s)	220
MaeII	ACGT	1 cut(s)	219
MboII	GAAGA	6 cut(s)	67, 175, 199, 276, 297, 300
MfeI	CAATTG	1 cut(s)	29
MhlI	GDGCHC	1 cut(s)	51
MluCI	AATT	1 cut(s)	29
MlyI	GAGTC	1 cut(s)	184
MnlI	CCTC	7 cut(s)	36, 116, 147, 207, 258, 264, 267
MslI	CAYNNNNRTG	1 cut(s)	100
MspA1I	CMGCKG	1 cut(s)	14
MunI	CAATTG	1 cut(s)	29
MvnI	CGCG	1 cut(s)	108
MwoI	GCNNNNNNNGC	1 cut(s)	296
NcoI	CCATGG	2 cut(s)	101, 212
NlaIII	CATG	2 cut(s)	105, 216
NlaIV	GGNNCC	3 cut(s)	24, 86, 87
NmeAIII	GCCGAG	1 cut(s)	172
PflFI	GACNNNGTC	1 cut(s)	73
PkrI	GCNGC	2 cut(s)	110, 210
PleI	GAGTC	1 cut(s)	184
PpsI	GAGTC	1 cut(s)	184
PpuMI	RGGWCCY	1 cut(s)	85
PshAI	GACNNNNGTC	1 cut(s)	278
Psp5II	RGGWCCY	1 cut(s)	85
PspN4I	GGNNCC	3 cut(s)	24, 86, 87
PspPI	GGNCC	2 cut(s)	23, 85
PspPPI	RGGWCCY	1 cut(s)	85
PstI	CTGCAG	1 cut(s)	292
PsyI	GACNNNGTC	1 cut(s)	73
PvuII	CAGCTG	1 cut(s)	14
RsaI	GTAC	2 cut(s)	127, 242
RsaNI	GTAC	2 cut(s)	126, 241
RseI	CAYNNNNRTG	1 cut(s)	100
SatI	GCNGC	2 cut(s)	109, 209
Sau96I	GGNCC	2 cut(s)	23, 85
SchI	GAGTC	1 cut(s)	184
SduI	GDGCHC	1 cut(s)	51
SetI	ASST	4 cut(s)	16, 127, 222, 301
SfcI	CTRYAG	1 cut(s)	288
SinI	GGWCC	1 cut(s)	85
SmiMI	CAYNNNNRTG	1 cut(s)	100
Sse9I	AATT	1 cut(s)	29
SsiI	CCGC	1 cut(s)	108
StyI	CCWWGG	2 cut(s)	101, 212
TaaI	ACNGT	1 cut(s)	238
TaiI	ACGT	1 cut(s)	222
TaqI	TCGA	1 cut(s)	152
TasI	AATT	1 cut(s)	29
TatI	WGTACW	1 cut(s)	240
TauI	GCSGC	1 cut(s)	111
TscAI	CASTG	2 cut(s)	178, 241
TseI	GCWGC	1 cut(s)	208
TspDTI	ATGAA	2 cut(s)	291, 309
TspRI	CASTG	2 cut(s)	178, 241
Tth111I	GACNNNGTC	1 cut(s)	73
VpaK11BI	GGWCC	1 cut(s)	85

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.