Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0005750

Physical Location & Seq

Genomic Coordinates Reverse (-)

6018292 .. 6018658

Gene Structure 367 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G080900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

AACCCAATTCCATCATCTTTTTCTCACTTTGGTGGAGGTACTGGGTTGATGATTGAGTATTCGTCGAGGCCACAGAAGAAGGCCACTGCGCATCACAGGAAGACTCGGCCTCGCAAAACGCAGCCATGGGACGTGAAACGCAAGCCCACTGTGTACACTCTTCTGCCTCCTCTCCCTGCCGACTGGACATTGGTCTCTTCTGCAGATGAAGCTTCATCTTCTTCCCCAAAAGAGCCACCCACTACTGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF5323

Protein Analysis

84

Amino Acids

9.17

Weight (kDa)

9.9

Isoelectric Point (pI)

57.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005750)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17870 AT5G17870
fragaria_vesca	FvH4_5g33440
malus_domestica	MD08G1211600.v1.1 MD15G1394500.v1.1
prunus_persica	Prupe.1G543500_v2.0.a1 Prupe.3G080900_v2.0.a1 Prupe.8G111300_v2.0.a1 Prupe.8G111300_v2.0.a1 Prupe.8G111300_v2.0.a1 Prupe.8G111300_v2.0.a1 Prupe.8G111300_v2.0.a1 Prupe.8G111300_v2.0.a1 Prupe.8G111300_v2.0.a1 Prupe.8G111300_v2.0.a1 Prupe.8G111300_v2.0.a1
pyrus_communis	pycom08g18230
rosa_chinensis	RchiOBHm_Chr7g0232161
rosa_laevigata	RLG00000001384
rosa_multiflora	Rmu_sc0000616.1_g000018 Rmu_sc0004780.1_g000006
rosa_roxburghii	Rroxscaffold_3G00228720
rosa_rugosa	Rorug07G0269900
rosa_samantha	Rh7AG424500 Rh7BG398600 Rh7CG444800 Rh7DG416500
rosa_wichuraiana	Rw7G035110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	90
AfaI	GTAC	2 cut(s)	40, 155
AjiI	CACGTC	1 cut(s)	133
AleI	CACNNNNGTG	1 cut(s)	30
AluBI	AGCT	1 cut(s)	212
AluI	AGCT	1 cut(s)	212
Alw26I	GTCTC	1 cut(s)	199
AoxI	GGCC	3 cut(s)	68, 81, 107
ApeKI	GCWGC	1 cut(s)	121
AspLEI	GCGC	1 cut(s)	91
BbsI	GAAGAC	1 cut(s)	107
BbvI	GCAGC	1 cut(s)	133
BccI	CCATC	1 cut(s)	19
BcoDI	GTCTC	1 cut(s)	199
BfmI	CTRYAG	1 cut(s)	201
BisI	GCNGC	1 cut(s)	122
BlsI	GCNGC	1 cut(s)	123
BmgBI	CACGTC	1 cut(s)	133
BmrI	ACTGGG	1 cut(s)	51
BmsI	GCATC	1 cut(s)	100
BmuI	ACTGGG	1 cut(s)	51
BoxI	GACNNNNGTC	1 cut(s)	191
BpiI	GAAGAC	1 cut(s)	107
BsaI	GGTCTC	1 cut(s)	199
BsaJI	CCNNGG	1 cut(s)	125
Bse1I	ACTGG	2 cut(s)	46, 188
BseDI	CCNNGG	1 cut(s)	125
BseMII	CTCAG	1 cut(s)	237
BseNI	ACTGG	2 cut(s)	46, 188
BseRI	GAGGAG	1 cut(s)	159
BseXI	GCAGC	1 cut(s)	133
BshFI	GGCC	3 cut(s)	70, 83, 109
BslFI	GGGAC	1 cut(s)	143
BsmAI	GTCTC	1 cut(s)	199
BsmFI	GGGAC	1 cut(s)	143
BsnI	GGCC	3 cut(s)	70, 83, 109
Bso31I	GGTCTC	1 cut(s)	199
Bsp1407I	TGTACA	1 cut(s)	153
Bsp19I	CCATGG	1 cut(s)	125
BspANI	GGCC	3 cut(s)	70, 83, 109
BspCNI	CTCAG	1 cut(s)	238
BspMAI	CTGCAG	1 cut(s)	205
BspTNI	GGTCTC	1 cut(s)	199
BsrGI	TGTACA	1 cut(s)	153
BsrI	ACTGG	2 cut(s)	46, 188
BssECI	CCNNGG	1 cut(s)	125
BssT1I	CCWWGG	1 cut(s)	125
Bst4CI	ACNGT	1 cut(s)	151
Bst6I	CTCTTC	2 cut(s)	165, 202
BstAUI	TGTACA	1 cut(s)	153
BstC8I	GCNNGC	1 cut(s)	143
BstDEI	CTNAG	1 cut(s)	246
BstDSI	CCRYGG	1 cut(s)	125
BstHHI	GCGC	1 cut(s)	91
BstMAI	GTCTC	1 cut(s)	199
BstMWI	GCNNNNNNNGC	1 cut(s)	209
BstPAI	GACNNNNGTC	1 cut(s)	191
BstSFI	CTRYAG	1 cut(s)	201
BstV1I	GCAGC	1 cut(s)	133
BstV2I	GAAGAC	1 cut(s)	107
BsuRI	GGCC	3 cut(s)	70, 83, 109
BtgI	CCRYGG	1 cut(s)	125
BtrI	CACGTC	1 cut(s)	133
BtsI	GCAGTG	1 cut(s)	84
BtsIMutI	CAGTG	2 cut(s)	84, 147
Cac8I	GCNNGC	1 cut(s)	143
CfoI	GCGC	1 cut(s)	91
Csp6I	GTAC	2 cut(s)	39, 154
CviAII	CATG	1 cut(s)	126
CviJI	RGCY	7 cut(s)	70, 83, 109, 124, 145, 212, 235
CviKI_1	RGCY	7 cut(s)	70, 83, 109, 124, 145, 212, 235
CviQI	GTAC	2 cut(s)	39, 154
DdeI	CTNAG	1 cut(s)	246
Eam1104I	CTCTTC	2 cut(s)	165, 202
EarI	CTCTTC	2 cut(s)	165, 202
Eco130I	CCWWGG	1 cut(s)	125
Eco31I	GGTCTC	1 cut(s)	199
EcoT14I	CCWWGG	1 cut(s)	125
ErhI	CCWWGG	1 cut(s)	125
FaeI	CATG	1 cut(s)	129
FaiI	YATR	1 cut(s)	127
FaqI	GGGAC	1 cut(s)	143
FatI	CATG	1 cut(s)	125
Fnu4HI	GCNGC	1 cut(s)	122
Fsp4HI	GCNGC	1 cut(s)	122
FspI	TGCGCA	1 cut(s)	90
GlaI	GCGC	1 cut(s)	90
GluI	GCNGC	1 cut(s)	122
HaeIII	GGCC	3 cut(s)	70, 83, 109
HhaI	GCGC	1 cut(s)	91
Hin1II	CATG	1 cut(s)	129
Hin6I	GCGC	1 cut(s)	89
HinP1I	GCGC	1 cut(s)	89
HindIII	AAGCTT	1 cut(s)	210
HinfI	GANTC	1 cut(s)	103
Hpy166II	GTNNAC	2 cut(s)	154, 156
Hpy8I	GTNNAC	2 cut(s)	154, 156
Hpy99I	CGWCG	1 cut(s)	67
HpyAV	CCTTC	1 cut(s)	73
HpyCH4III	ACNGT	1 cut(s)	151
HpyCH4IV	ACGT	1 cut(s)	132
HpyCH4V	TGCA	1 cut(s)	203
HpyF10VI	GCNNNNNNNGC	1 cut(s)	209
HpyF3I	CTNAG	1 cut(s)	246
HpySE526I	ACGT	1 cut(s)	132
Hsp92II	CATG	1 cut(s)	129
HspAI	GCGC	1 cut(s)	89
LpnPI	CCDG	4 cut(s)	27, 82, 169, 189
Lsp1109I	GCAGC	1 cut(s)	133
LweI	GCATC	1 cut(s)	100
MaeII	ACGT	1 cut(s)	132
MboII	GAAGA	6 cut(s)	88, 112, 152, 189, 210, 213
MluCI	AATT	1 cut(s)	6
MlyI	GAGTC	1 cut(s)	97
MnlI	CCTC	5 cut(s)	29, 60, 120, 177, 180
MslI	CAYNNNNRTG	1 cut(s)	30
MwoI	GCNNNNNNNGC	1 cut(s)	209
NcoI	CCATGG	1 cut(s)	125
NlaIII	CATG	1 cut(s)	129
NmeAIII	GCCGAG	1 cut(s)	85
NsbI	TGCGCA	1 cut(s)	90
OliI	CACNNNNGTG	1 cut(s)	30
PkrI	GCNGC	1 cut(s)	123
PleI	GAGTC	1 cut(s)	97
PpsI	GAGTC	1 cut(s)	97
PshAI	GACNNNNGTC	1 cut(s)	191
PstI	CTGCAG	1 cut(s)	205
RsaI	GTAC	2 cut(s)	40, 155
RsaNI	GTAC	2 cut(s)	39, 154
RseI	CAYNNNNRTG	1 cut(s)	30
SatI	GCNGC	1 cut(s)	122
SchI	GAGTC	1 cut(s)	97
SetI	ASST	3 cut(s)	40, 135, 214
SfaNI	GCATC	1 cut(s)	100
SfcI	CTRYAG	1 cut(s)	201
SmiMI	CAYNNNNRTG	1 cut(s)	30
Sse9I	AATT	1 cut(s)	6
StyI	CCWWGG	1 cut(s)	125
TaaI	ACNGT	1 cut(s)	151
TaiI	ACGT	1 cut(s)	135
TaqI	TCGA	1 cut(s)	65
TasI	AATT	1 cut(s)	6
TatI	WGTACW	1 cut(s)	153
TscAI	CASTG	2 cut(s)	91, 154
TseI	GCWGC	1 cut(s)	121
TspDTI	ATGAA	2 cut(s)	204, 222
TspRI	CASTG	2 cut(s)	91, 154

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.