Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000616.1

Orthogroup ID

OG0005750

Physical Location & Seq

Genomic Coordinates Forward (+)

108751 .. 109089

Gene Structure 339 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000616.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

atgtcagtctccgctgtgatgttggggcctcaactcctctccattcccgtccctctccgaaacccctccgcgacggcgtcgttcggactcacccagatggctccaccactctgcggtggtgggttggtgatagaatgctcgtcgaggccgcagaagaaggcgacggcgcaccaccgcaagacccggccacgcaaaacggctgcgtgggacgtgaaacgcaagcccaccgtgtacgctcctctgccgcctctccccgccgattgggttttcctcgcttcttctgatgatgcttcagctgcagactcttcttctccgcaagcacctcccactgttcagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF5323

Protein Analysis

112

Amino Acids

11.78

Weight (kDa)

9.92

Isoelectric Point (pI)

69.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005750)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17870 AT5G17870
fragaria_vesca	FvH4_5g33440
malus_domestica	MD08G1211600.v1.1 MD15G1394500.v1.1
prunus_persica	Prupe.1G543500_v2.0.a1 Prupe.3G080900_v2.0.a1 Prupe.8G111300_v2.0.a1 Prupe.8G111300_v2.0.a1 Prupe.8G111300_v2.0.a1 Prupe.8G111300_v2.0.a1 Prupe.8G111300_v2.0.a1 Prupe.8G111300_v2.0.a1 Prupe.8G111300_v2.0.a1 Prupe.8G111300_v2.0.a1 Prupe.8G111300_v2.0.a1
pyrus_communis	pycom08g18230
rosa_chinensis	RchiOBHm_Chr7g0232161
rosa_laevigata	RLG00000001384
rosa_multiflora	Rmu_sc0000616.1_g000018 Rmu_sc0004780.1_g000006
rosa_roxburghii	Rroxscaffold_3G00228720
rosa_rugosa	Rorug07G0269900
rosa_samantha	Rh7AG424500 Rh7BG398600 Rh7CG444800 Rh7DG416500
rosa_wichuraiana	Rw7G035110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	71
AciI	CCGC	8 cut(s)	12, 69, 114, 149, 175, 245, 255, 314
AcoI	YGGCCR	1 cut(s)	185
AcuI	CTGAAG	1 cut(s)	276
AcyI	GRCGYC	1 cut(s)	77
AfaI	GTAC	1 cut(s)	233
AfiI	CCNNNNNNNGG	2 cut(s)	113, 261
AjiI	CACGTC	1 cut(s)	211
AluBI	AGCT	1 cut(s)	296
AluI	AGCT	1 cut(s)	296
Alw26I	GTCTC	1 cut(s)	13
AoxI	GGCC	3 cut(s)	26, 146, 185
ApeKI	GCWGC	2 cut(s)	200, 296
AspLEI	GCGC	1 cut(s)	169
AspS9I	GGNCC	1 cut(s)	26
AsuC2I	CCSGG	1 cut(s)	184
AsuHPI	GGTGA	2 cut(s)	82, 139
BbvI	GCAGC	2 cut(s)	187, 283
BccI	CCATC	1 cut(s)	91
BceAI	ACGGC	3 cut(s)	90, 180, 213
BcnI	CCSGG	1 cut(s)	184
BcoDI	GTCTC	1 cut(s)	13
BfmI	CTRYAG	1 cut(s)	297
BisI	GCNGC	4 cut(s)	149, 201, 245, 297
BlsI	GCNGC	4 cut(s)	150, 202, 246, 298
Bme1390I	CCNGG	1 cut(s)	184
BmgBI	CACGTC	1 cut(s)	211
BmgT120I	GGNCC	1 cut(s)	26
BmiI	GGNNCC	2 cut(s)	27, 102
BmrFI	CCNGG	1 cut(s)	184
BmsI	GCATC	1 cut(s)	277
BpuMI	CCSGG	1 cut(s)	184
BsaHI	GRCGYC	1 cut(s)	77
Bsc4I	CCNNNNNNNGG	2 cut(s)	113, 261
BseLI	CCNNNNNNNGG	2 cut(s)	113, 261
BseRI	GAGGAG	2 cut(s)	26, 228
BseXI	GCAGC	2 cut(s)	187, 283
Bsh1236I	CGCG	1 cut(s)	71
BshFI	GGCC	3 cut(s)	28, 148, 187
BsiSI	CCGG	1 cut(s)	184
BslFI	GGGAC	2 cut(s)	35, 221
BslI	CCNNNNNNNGG	2 cut(s)	113, 261
BsmAI	GTCTC	1 cut(s)	13
BsmFI	GGGAC	2 cut(s)	35, 221
BsmI	GAATGC	1 cut(s)	140
BsnI	GGCC	3 cut(s)	28, 148, 187
BspACI	CCGC	8 cut(s)	12, 69, 114, 149, 175, 245, 255, 314
BspANI	GGCC	3 cut(s)	28, 148, 187
BspFNI	CGCG	1 cut(s)	71
BspLI	GGNNCC	2 cut(s)	27, 102
BspMAI	CTGCAG	1 cut(s)	301
BssNI	GRCGYC	1 cut(s)	77
Bst4CI	ACNGT	2 cut(s)	229, 331
Bst6I	CTCTTC	1 cut(s)	310
BstACI	GRCGYC	1 cut(s)	77
BstC8I	GCNNGC	2 cut(s)	221, 318
BstFNI	CGCG	1 cut(s)	71
BstHHI	GCGC	1 cut(s)	169
BstMAI	GTCTC	1 cut(s)	13
BstMWI	GCNNNNNNNGC	1 cut(s)	296
BstSCI	CCNGG	1 cut(s)	182
BstSFI	CTRYAG	1 cut(s)	297
BstUI	CGCG	1 cut(s)	71
BstV1I	GCAGC	2 cut(s)	187, 283
BsuRI	GGCC	3 cut(s)	28, 148, 187
BtrI	CACGTC	1 cut(s)	211
BtsIMutI	CAGTG	1 cut(s)	327
Cac8I	GCNNGC	2 cut(s)	221, 318
CfoI	GCGC	1 cut(s)	169
Cfr13I	GGNCC	1 cut(s)	26
CseI	GACGC	1 cut(s)	66
Csp6I	GTAC	1 cut(s)	232
CviJI	RGCY	7 cut(s)	28, 101, 148, 187, 200, 223, 296
CviKI_1	RGCY	7 cut(s)	28, 101, 148, 187, 200, 223, 296
CviQI	GTAC	1 cut(s)	232
EaeI	YGGCCR	1 cut(s)	185
Eam1104I	CTCTTC	1 cut(s)	310
EarI	CTCTTC	1 cut(s)	310
Eco57I	CTGAAG	1 cut(s)	276
EcoO109I	RGGNCCY	1 cut(s)	26
FaqI	GGGAC	2 cut(s)	35, 221
FauI	CCCGC	1 cut(s)	262
Fnu4HI	GCNGC	4 cut(s)	149, 201, 245, 297
Fsp4HI	GCNGC	4 cut(s)	149, 201, 245, 297
GlaI	GCGC	1 cut(s)	168
GluI	GCNGC	4 cut(s)	149, 201, 245, 297
HaeIII	GGCC	3 cut(s)	28, 148, 187
HapII	CCGG	1 cut(s)	184
HgaI	GACGC	1 cut(s)	66
HhaI	GCGC	1 cut(s)	169
Hin1I	GRCGYC	1 cut(s)	77
Hin6I	GCGC	1 cut(s)	167
HinP1I	GCGC	1 cut(s)	167
HinfI	GANTC	2 cut(s)	87, 302
HpaII	CCGG	1 cut(s)	184
HphI	GGTGA	2 cut(s)	82, 139
Hpy166II	GTNNAC	1 cut(s)	232
Hpy188I	TCNGA	3 cut(s)	59, 86, 283
Hpy8I	GTNNAC	1 cut(s)	232
Hpy99I	CGWCG	4 cut(s)	76, 82, 145, 166
HpyAV	CCTTC	1 cut(s)	151
HpyCH4III	ACNGT	2 cut(s)	229, 331
HpyCH4IV	ACGT	1 cut(s)	210
HpyCH4V	TGCA	1 cut(s)	299
HpyF10VI	GCNNNNNNNGC	1 cut(s)	296
HpySE526I	ACGT	1 cut(s)	210
Hsp92I	GRCGYC	1 cut(s)	77
HspAI	GCGC	1 cut(s)	167
LmnI	GCTCC	2 cut(s)	106, 241
LpnPI	CCDG	2 cut(s)	107, 197
Lsp1109I	GCAGC	2 cut(s)	187, 283
LweI	GCATC	1 cut(s)	277
MaeII	ACGT	1 cut(s)	210
MboII	GAAGA	4 cut(s)	166, 270, 297, 300
MlyI	GAGTC	2 cut(s)	81, 296
MnlI	CCTC	9 cut(s)	39, 47, 63, 76, 138, 249, 258, 281, 333
MslI	CAYNNNNRTG	1 cut(s)	95
MspA1I	CMGCKG	2 cut(s)	14, 296
MspI	CCGG	1 cut(s)	184
MspR9I	CCNGG	1 cut(s)	184
Mva1269I	GAATGC	1 cut(s)	140
MvnI	CGCG	1 cut(s)	71
MwoI	GCNNNNNNNGC	1 cut(s)	296
NciI	CCSGG	1 cut(s)	184
NlaIV	GGNNCC	2 cut(s)	27, 102
PctI	GAATGC	1 cut(s)	140
PflFI	GACNNNGTC	1 cut(s)	76
PkrI	GCNGC	4 cut(s)	150, 202, 246, 298
PleI	GAGTC	2 cut(s)	81, 296
PpsI	GAGTC	2 cut(s)	81, 296
PspN4I	GGNNCC	2 cut(s)	27, 102
PspPI	GGNCC	1 cut(s)	26
PstI	CTGCAG	1 cut(s)	301
PsyI	GACNNNGTC	1 cut(s)	76
PvuII	CAGCTG	1 cut(s)	296
RsaI	GTAC	1 cut(s)	233
RsaNI	GTAC	1 cut(s)	232
RseI	CAYNNNNRTG	1 cut(s)	95
SatI	GCNGC	4 cut(s)	149, 201, 245, 297
Sau96I	GGNCC	1 cut(s)	26
SchI	GAGTC	2 cut(s)	81, 296
ScrFI	CCNGG	1 cut(s)	184
SetI	ASST	3 cut(s)	213, 298, 325
SfaNI	GCATC	1 cut(s)	277
SfcI	CTRYAG	1 cut(s)	297
SmiMI	CAYNNNNRTG	1 cut(s)	95
SsiI	CCGC	8 cut(s)	12, 69, 114, 149, 175, 245, 255, 314
StyD4I	CCNGG	1 cut(s)	182
TaaI	ACNGT	2 cut(s)	229, 331
TaiI	ACGT	1 cut(s)	213
TaqI	TCGA	1 cut(s)	143
TauI	GCSGC	2 cut(s)	151, 247
TscAI	CASTG	1 cut(s)	334
TseI	GCWGC	2 cut(s)	200, 296
TspRI	CASTG	1 cut(s)	334
Tth111I	GACNNNGTC	1 cut(s)	76

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.