Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004780.1

Orthogroup ID

OG0005750

Physical Location & Seq

Genomic Coordinates Reverse (-)

37633 .. 37980

Gene Structure 348 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004780.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

atgtcagtctccgctgtgatgttggggcctcaactcctctccattcccgtccctctccgaaacccctccgcgacggcgtcgttcggactcacccagatggctccaccactctgcggtggttccggtggtgggttggtgatagaatgctcgtcgaggccgcagaagaaggcgacggcgcaccaccgcaagacgcggccacgcaaaacggctgcgtgggacgtgaaacgcaagcccactgtgtacgctcctctgccgcctctccccgccgattgggttttcctcgcttcttctgatgatgcttcagctgcagactcttcttctccgcaagcaccgcccactgttgagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF5323

Protein Analysis

115

Amino Acids

11.99

Weight (kDa)

9.69

Isoelectric Point (pI)

69.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005750)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17870 AT5G17870
fragaria_vesca	FvH4_5g33440
malus_domestica	MD08G1211600.v1.1 MD15G1394500.v1.1
prunus_persica	Prupe.1G543500_v2.0.a1 Prupe.3G080900_v2.0.a1 Prupe.8G111300_v2.0.a1 Prupe.8G111300_v2.0.a1 Prupe.8G111300_v2.0.a1 Prupe.8G111300_v2.0.a1 Prupe.8G111300_v2.0.a1 Prupe.8G111300_v2.0.a1 Prupe.8G111300_v2.0.a1 Prupe.8G111300_v2.0.a1 Prupe.8G111300_v2.0.a1
pyrus_communis	pycom08g18230
rosa_chinensis	RchiOBHm_Chr7g0232161
rosa_laevigata	RLG00000001384
rosa_multiflora	Rmu_sc0000616.1_g000018 Rmu_sc0004780.1_g000006
rosa_roxburghii	Rroxscaffold_3G00228720
rosa_rugosa	Rorug07G0269900
rosa_samantha	Rh7AG424500 Rh7BG398600 Rh7CG444800 Rh7DG416500
rosa_wichuraiana	Rw7G035110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	71, 193
AcoI	YGGCCR	1 cut(s)	194
AcuI	CTGAAG	1 cut(s)	285
AcyI	GRCGYC	1 cut(s)	77
AfaI	GTAC	1 cut(s)	242
AfiI	CCNNNNNNNGG	3 cut(s)	113, 129, 270
AjiI	CACGTC	1 cut(s)	220
AluBI	AGCT	1 cut(s)	305
AluI	AGCT	1 cut(s)	305
Alw26I	GTCTC	1 cut(s)	13
AoxI	GGCC	3 cut(s)	26, 155, 194
ApeKI	GCWGC	2 cut(s)	209, 305
AspLEI	GCGC	1 cut(s)	178
AspS9I	GGNCC	1 cut(s)	26
AsuHPI	GGTGA	2 cut(s)	82, 148
BbvI	GCAGC	2 cut(s)	196, 292
BccI	CCATC	1 cut(s)	91
BceAI	ACGGC	3 cut(s)	90, 189, 222
BcoDI	GTCTC	1 cut(s)	13
BfmI	CTRYAG	1 cut(s)	306
BisI	GCNGC	5 cut(s)	158, 194, 210, 254, 306
BlsI	GCNGC	5 cut(s)	159, 195, 211, 255, 307
BmgBI	CACGTC	1 cut(s)	220
BmgT120I	GGNCC	1 cut(s)	26
BmiI	GGNNCC	3 cut(s)	27, 102, 121
BmsI	GCATC	1 cut(s)	286
BsaHI	GRCGYC	1 cut(s)	77
BsaWI	WCCGGW	1 cut(s)	122
Bsc4I	CCNNNNNNNGG	3 cut(s)	113, 129, 270
BseLI	CCNNNNNNNGG	3 cut(s)	113, 129, 270
BseRI	GAGGAG	2 cut(s)	26, 237
BseXI	GCAGC	2 cut(s)	196, 292
Bsh1236I	CGCG	2 cut(s)	71, 193
BshFI	GGCC	3 cut(s)	28, 157, 196
BsiSI	CCGG	1 cut(s)	123
BslFI	GGGAC	2 cut(s)	35, 230
BslI	CCNNNNNNNGG	3 cut(s)	113, 129, 270
BsmAI	GTCTC	1 cut(s)	13
BsmFI	GGGAC	2 cut(s)	35, 230
BsmI	GAATGC	1 cut(s)	149
BsnI	GGCC	3 cut(s)	28, 157, 196
BspANI	GGCC	3 cut(s)	28, 157, 196
BspFNI	CGCG	2 cut(s)	71, 193
BspLI	GGNNCC	3 cut(s)	27, 102, 121
BspMAI	CTGCAG	1 cut(s)	310
BssNI	GRCGYC	1 cut(s)	77
Bst4CI	ACNGT	2 cut(s)	238, 340
Bst6I	CTCTTC	1 cut(s)	319
BstACI	GRCGYC	1 cut(s)	77
BstC8I	GCNNGC	2 cut(s)	230, 327
BstFNI	CGCG	2 cut(s)	71, 193
BstHHI	GCGC	1 cut(s)	178
BstMAI	GTCTC	1 cut(s)	13
BstMWI	GCNNNNNNNGC	2 cut(s)	305, 331
BstSFI	CTRYAG	1 cut(s)	306
BstUI	CGCG	2 cut(s)	71, 193
BstV1I	GCAGC	2 cut(s)	196, 292
BsuRI	GGCC	3 cut(s)	28, 157, 196
BtrI	CACGTC	1 cut(s)	220
BtsIMutI	CAGTG	2 cut(s)	234, 336
Cac8I	GCNNGC	2 cut(s)	230, 327
CfoI	GCGC	1 cut(s)	178
Cfr13I	GGNCC	1 cut(s)	26
CseI	GACGC	2 cut(s)	66, 199
Csp6I	GTAC	1 cut(s)	241
CviJI	RGCY	7 cut(s)	28, 101, 157, 196, 209, 232, 305
CviKI_1	RGCY	7 cut(s)	28, 101, 157, 196, 209, 232, 305
CviQI	GTAC	1 cut(s)	241
EaeI	YGGCCR	1 cut(s)	194
Eam1104I	CTCTTC	1 cut(s)	319
EarI	CTCTTC	1 cut(s)	319
Eco57I	CTGAAG	1 cut(s)	285
EcoO109I	RGGNCCY	1 cut(s)	26
FaqI	GGGAC	2 cut(s)	35, 230
FauI	CCCGC	1 cut(s)	271
Fnu4HI	GCNGC	5 cut(s)	158, 194, 210, 254, 306
Fsp4HI	GCNGC	5 cut(s)	158, 194, 210, 254, 306
GlaI	GCGC	1 cut(s)	177
GluI	GCNGC	5 cut(s)	158, 194, 210, 254, 306
HaeIII	GGCC	3 cut(s)	28, 157, 196
HapII	CCGG	1 cut(s)	123
HgaI	GACGC	2 cut(s)	66, 199
HhaI	GCGC	1 cut(s)	178
Hin1I	GRCGYC	1 cut(s)	77
Hin6I	GCGC	1 cut(s)	176
HinP1I	GCGC	1 cut(s)	176
HinfI	GANTC	2 cut(s)	87, 311
HpaII	CCGG	1 cut(s)	123
HphI	GGTGA	2 cut(s)	82, 148
Hpy166II	GTNNAC	1 cut(s)	241
Hpy188I	TCNGA	3 cut(s)	59, 86, 292
Hpy8I	GTNNAC	1 cut(s)	241
Hpy99I	CGWCG	4 cut(s)	76, 82, 154, 175
HpyAV	CCTTC	1 cut(s)	160
HpyCH4III	ACNGT	2 cut(s)	238, 340
HpyCH4IV	ACGT	1 cut(s)	219
HpyCH4V	TGCA	1 cut(s)	308
HpyF10VI	GCNNNNNNNGC	2 cut(s)	305, 331
HpySE526I	ACGT	1 cut(s)	219
Hsp92I	GRCGYC	1 cut(s)	77
HspAI	GCGC	1 cut(s)	176
LmnI	GCTCC	2 cut(s)	106, 250
LpnPI	CCDG	2 cut(s)	107, 136
Lsp1109I	GCAGC	2 cut(s)	196, 292
LweI	GCATC	1 cut(s)	286
MaeII	ACGT	1 cut(s)	219
MboII	GAAGA	4 cut(s)	175, 279, 306, 309
MlyI	GAGTC	2 cut(s)	81, 305
MnlI	CCTC	8 cut(s)	39, 47, 63, 76, 147, 258, 267, 290
MslI	CAYNNNNRTG	1 cut(s)	95
MspA1I	CMGCKG	2 cut(s)	14, 305
MspI	CCGG	1 cut(s)	123
Mva1269I	GAATGC	1 cut(s)	149
MvnI	CGCG	2 cut(s)	71, 193
MwoI	GCNNNNNNNGC	2 cut(s)	305, 331
NlaIV	GGNNCC	3 cut(s)	27, 102, 121
PctI	GAATGC	1 cut(s)	149
PflFI	GACNNNGTC	1 cut(s)	76
PkrI	GCNGC	5 cut(s)	159, 195, 211, 255, 307
PleI	GAGTC	2 cut(s)	81, 305
PpsI	GAGTC	2 cut(s)	81, 305
PspN4I	GGNNCC	3 cut(s)	27, 102, 121
PspPI	GGNCC	1 cut(s)	26
PstI	CTGCAG	1 cut(s)	310
PsyI	GACNNNGTC	1 cut(s)	76
PvuII	CAGCTG	1 cut(s)	305
RsaI	GTAC	1 cut(s)	242
RsaNI	GTAC	1 cut(s)	241
RseI	CAYNNNNRTG	1 cut(s)	95
SatI	GCNGC	5 cut(s)	158, 194, 210, 254, 306
Sau96I	GGNCC	1 cut(s)	26
SchI	GAGTC	2 cut(s)	81, 305
SetI	ASST	2 cut(s)	222, 307
SfaNI	GCATC	1 cut(s)	286
SfcI	CTRYAG	1 cut(s)	306
SmiMI	CAYNNNNRTG	1 cut(s)	95
TaaI	ACNGT	2 cut(s)	238, 340
TaiI	ACGT	1 cut(s)	222
TaqI	TCGA	1 cut(s)	152
TauI	GCSGC	3 cut(s)	160, 196, 256
TscAI	CASTG	2 cut(s)	241, 343
TseI	GCWGC	2 cut(s)	209, 305
TspRI	CASTG	2 cut(s)	241, 343
Tth111I	GACNNNGTC	1 cut(s)	76

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.