Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0005750

Physical Location & Seq

Genomic Coordinates Reverse (-)

14063084 .. 14064858

Gene Structure 1775 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G111300.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 225 bp

ATGGGTGTGGCCGTGAAGAACCCATCTGCGATCGAGTCGTTTGGGGTCCCAAAGACATCCCCATTGCGCGGCTCAGTTGGTGGAGGTACTGGGTTGATGATTGAGTGTTCGTCGAGGCCACAGAAGAAGGCCACTGCGCATCACAGGAAGACTCGGCCTCGCAAAACGCAGCCATGGGACGTGAAACGCAAGCCCACTGTGTACATTGGTCTCTTATGCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF5323

Protein Analysis

75

Amino Acids

8.06

Weight (kDa)

11.07

Isoelectric Point (pI)

56.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005750)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17870 AT5G17870
fragaria_vesca	FvH4_5g33440
malus_domestica	MD08G1211600.v1.1 MD15G1394500.v1.1
prunus_persica	Prupe.1G543500_v2.0.a1 Prupe.3G080900_v2.0.a1 Prupe.8G111300_v2.0.a1 Prupe.8G111300_v2.0.a1 Prupe.8G111300_v2.0.a1 Prupe.8G111300_v2.0.a1 Prupe.8G111300_v2.0.a1 Prupe.8G111300_v2.0.a1 Prupe.8G111300_v2.0.a1 Prupe.8G111300_v2.0.a1 Prupe.8G111300_v2.0.a1
pyrus_communis	pycom08g18230
rosa_chinensis	RchiOBHm_Chr7g0232161
rosa_laevigata	RLG00000001384
rosa_multiflora	Rmu_sc0000616.1_g000018 Rmu_sc0004780.1_g000006
rosa_roxburghii	Rroxscaffold_3G00228720
rosa_rugosa	Rorug07G0269900
rosa_samantha	Rh7AG424500 Rh7BG398600 Rh7CG444800 Rh7DG416500
rosa_wichuraiana	Rw7G035110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	138
AccII	CGCG	1 cut(s)	69
AciI	CCGC	1 cut(s)	69
AcoI	YGGCCR	1 cut(s)	9
AfaI	GTAC	2 cut(s)	88, 203
AfiI	CCNNNNNNNGG	1 cut(s)	68
AjiI	CACGTC	1 cut(s)	181
Alw26I	GTCTC	1 cut(s)	215
AoxI	GGCC	4 cut(s)	9, 116, 129, 155
ApeKI	GCWGC	1 cut(s)	169
AspLEI	GCGC	2 cut(s)	69, 139
AspS9I	GGNCC	1 cut(s)	46
AvaII	GGWCC	1 cut(s)	46
BbsI	GAAGAC	1 cut(s)	155
BbvI	GCAGC	1 cut(s)	181
BccI	CCATC	1 cut(s)	31
BcoDI	GTCTC	1 cut(s)	215
BisI	GCNGC	2 cut(s)	70, 170
BlsI	GCNGC	2 cut(s)	71, 171
Bme18I	GGWCC	1 cut(s)	46
BmgBI	CACGTC	1 cut(s)	181
BmgT120I	GGNCC	1 cut(s)	46
BmiI	GGNNCC	2 cut(s)	47, 48
BmrI	ACTGGG	1 cut(s)	99
BmsI	GCATC	1 cut(s)	148
BmuI	ACTGGG	1 cut(s)	99
BpiI	GAAGAC	1 cut(s)	155
BsaI	GGTCTC	1 cut(s)	215
BsaJI	CCNNGG	1 cut(s)	173
Bsc4I	CCNNNNNNNGG	1 cut(s)	68
Bse1I	ACTGG	1 cut(s)	94
Bse3DI	GCAATG	1 cut(s)	62
BseDI	CCNNGG	1 cut(s)	173
BseGI	GGATG	1 cut(s)	56
BseLI	CCNNNNNNNGG	1 cut(s)	68
BseMI	GCAATG	1 cut(s)	62
BseMII	CTCAG	1 cut(s)	87
BseNI	ACTGG	1 cut(s)	94
BseXI	GCAGC	1 cut(s)	181
Bsh1236I	CGCG	1 cut(s)	69
Bsh1285I	CGRYCG	1 cut(s)	33
BshFI	GGCC	4 cut(s)	11, 118, 131, 157
BsiEI	CGRYCG	1 cut(s)	33
BslFI	GGGAC	2 cut(s)	32, 191
BslI	CCNNNNNNNGG	1 cut(s)	68
BsmAI	GTCTC	1 cut(s)	215
BsmFI	GGGAC	2 cut(s)	32, 191
BsnI	GGCC	4 cut(s)	11, 118, 131, 157
Bso31I	GGTCTC	1 cut(s)	215
Bsp1407I	TGTACA	1 cut(s)	201
Bsp143I	GATC	1 cut(s)	30
Bsp19I	CCATGG	1 cut(s)	173
BspACI	CCGC	1 cut(s)	69
BspANI	GGCC	4 cut(s)	11, 118, 131, 157
BspCNI	CTCAG	1 cut(s)	86
BspFNI	CGCG	1 cut(s)	69
BspLI	GGNNCC	2 cut(s)	47, 48
BspTNI	GGTCTC	1 cut(s)	215
BsrDI	GCAATG	1 cut(s)	62
BsrGI	TGTACA	1 cut(s)	201
BsrI	ACTGG	1 cut(s)	94
BssECI	CCNNGG	1 cut(s)	173
BssMI	GATC	1 cut(s)	30
BssT1I	CCWWGG	1 cut(s)	173
Bst4CI	ACNGT	1 cut(s)	199
BstAUI	TGTACA	1 cut(s)	201
BstC8I	GCNNGC	1 cut(s)	191
BstDEI	CTNAG	1 cut(s)	73
BstDSI	CCRYGG	1 cut(s)	173
BstF5I	GGATG	1 cut(s)	56
BstFNI	CGCG	1 cut(s)	69
BstHHI	GCGC	2 cut(s)	69, 139
BstKTI	GATC	1 cut(s)	33
BstMAI	GTCTC	1 cut(s)	215
BstMBI	GATC	1 cut(s)	30
BstMCI	CGRYCG	1 cut(s)	33
BstUI	CGCG	1 cut(s)	69
BstV1I	GCAGC	1 cut(s)	181
BstV2I	GAAGAC	1 cut(s)	155
BsuRI	GGCC	4 cut(s)	11, 118, 131, 157
BtgI	CCRYGG	1 cut(s)	173
BtrI	CACGTC	1 cut(s)	181
BtsCI	GGATG	1 cut(s)	56
BtsI	GCAGTG	1 cut(s)	132
BtsIMutI	CAGTG	2 cut(s)	132, 195
Cac8I	GCNNGC	1 cut(s)	191
CfoI	GCGC	2 cut(s)	69, 139
Cfr13I	GGNCC	1 cut(s)	46
Csp6I	GTAC	2 cut(s)	87, 202
CviAII	CATG	1 cut(s)	174
CviJI	RGCY	7 cut(s)	11, 72, 118, 131, 157, 172, 193
CviKI_1	RGCY	7 cut(s)	11, 72, 118, 131, 157, 172, 193
CviQI	GTAC	2 cut(s)	87, 202
DdeI	CTNAG	1 cut(s)	73
DpnI	GATC	1 cut(s)	32
DpnII	GATC	1 cut(s)	30
EaeI	YGGCCR	1 cut(s)	9
Eco130I	CCWWGG	1 cut(s)	173
Eco31I	GGTCTC	1 cut(s)	215
Eco47I	GGWCC	1 cut(s)	46
EcoO109I	RGGNCCY	1 cut(s)	46
EcoT14I	CCWWGG	1 cut(s)	173
ErhI	CCWWGG	1 cut(s)	173
FaeI	CATG	1 cut(s)	177
FaiI	YATR	2 cut(s)	175, 217
FaqI	GGGAC	2 cut(s)	32, 191
FatI	CATG	1 cut(s)	173
Fnu4HI	GCNGC	2 cut(s)	70, 170
FokI	GGATG	1 cut(s)	43
Fsp4HI	GCNGC	2 cut(s)	70, 170
FspI	TGCGCA	1 cut(s)	138
GlaI	GCGC	2 cut(s)	68, 138
GluI	GCNGC	2 cut(s)	70, 170
HaeIII	GGCC	4 cut(s)	11, 118, 131, 157
HhaI	GCGC	2 cut(s)	69, 139
Hin1II	CATG	1 cut(s)	177
Hin6I	GCGC	2 cut(s)	67, 137
HinP1I	GCGC	2 cut(s)	67, 137
HinfI	GANTC	2 cut(s)	35, 151
Hpy166II	GTNNAC	1 cut(s)	202
Hpy8I	GTNNAC	1 cut(s)	202
Hpy99I	CGWCG	1 cut(s)	115
HpyAV	CCTTC	1 cut(s)	121
HpyCH4III	ACNGT	1 cut(s)	199
HpyCH4IV	ACGT	1 cut(s)	180
HpyCH4V	TGCA	1 cut(s)	219
HpyF3I	CTNAG	1 cut(s)	73
HpySE526I	ACGT	1 cut(s)	180
Hsp92II	CATG	1 cut(s)	177
HspAI	GCGC	2 cut(s)	67, 137
KflI	GGGWCCC	1 cut(s)	46
Kzo9I	GATC	1 cut(s)	30
LpnPI	CCDG	2 cut(s)	75, 130
Lsp1109I	GCAGC	1 cut(s)	181
LweI	GCATC	1 cut(s)	148
MaeII	ACGT	1 cut(s)	180
MalI	GATC	1 cut(s)	32
MboI	GATC	1 cut(s)	30
MboII	GAAGA	3 cut(s)	28, 136, 160
MlyI	GAGTC	2 cut(s)	44, 145
MnlI	CCTC	3 cut(s)	77, 108, 168
MvnI	CGCG	1 cut(s)	69
NcoI	CCATGG	1 cut(s)	173
NdeII	GATC	1 cut(s)	30
NlaIII	CATG	1 cut(s)	177
NlaIV	GGNNCC	2 cut(s)	47, 48
NmeAIII	GCCGAG	1 cut(s)	133
NsbI	TGCGCA	1 cut(s)	138
PkrI	GCNGC	2 cut(s)	71, 171
Ple19I	CGATCG	1 cut(s)	33
PleI	GAGTC	2 cut(s)	43, 145
PpsI	GAGTC	2 cut(s)	43, 145
PpuMI	RGGWCCY	1 cut(s)	46
Psp5II	RGGWCCY	1 cut(s)	46
PspN4I	GGNNCC	2 cut(s)	47, 48
PspPI	GGNCC	1 cut(s)	46
PspPPI	RGGWCCY	1 cut(s)	46
PvuI	CGATCG	1 cut(s)	33
RsaI	GTAC	2 cut(s)	88, 203
RsaNI	GTAC	2 cut(s)	87, 202
SatI	GCNGC	2 cut(s)	70, 170
Sau3AI	GATC	1 cut(s)	30
Sau96I	GGNCC	1 cut(s)	46
SchI	GAGTC	2 cut(s)	44, 145
SetI	ASST	2 cut(s)	88, 183
SfaNI	GCATC	1 cut(s)	148
SinI	GGWCC	1 cut(s)	46
SsiI	CCGC	1 cut(s)	69
StyI	CCWWGG	1 cut(s)	173
TaaI	ACNGT	1 cut(s)	199
TaiI	ACGT	1 cut(s)	183
TaqI	TCGA	2 cut(s)	33, 113
TatI	WGTACW	1 cut(s)	201
TauI	GCSGC	1 cut(s)	72
TscAI	CASTG	2 cut(s)	139, 202
TseI	GCWGC	1 cut(s)	169
TspRI	CASTG	2 cut(s)	139, 202
VpaK11BI	GGWCC	1 cut(s)	46

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.