AT5G18200

galactose-1-phosphate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0015115
Physical Location & Seq
Forward (+)
6015035 .. 6016799
1765 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G18200.1

Sequence Viewer

Length: 1056 bp
ATGACGTCACCGAGCCATGCCTCTGATCGCGGCGGCGGCGACGGTGACTCAGTCGAGAATCAGTCCCCTGAGCTCAGGAAAGATCCGGTAACTAACCGCTGGGTCATATTCTCTCCCGCCAGAGCCAAGAGACCGACTGATTTCAAATCCAAATCTCCCCAGAACCCTAATCCCAAACCTTCCTCATGCCCATTTTGCATCGGTCGTGAGCAAGAGTGTGCCCCGGAGTTATTTCGTGTGCCAGATCATGACCCGAATTGGAAACTCCGGGTCATCGAGAATCTGTACCCGGCTCTTAGTAGGAATCTCGAGACCCAATCGACCCAACCTGAGACGGGAACAAGTCGGACAATAGTCGGATTCGGATTCCACGACGTAGTGATCGAATCCCCTGTTCATTCGATTCAGCTCTCCGATATCGATCCGGTGGGTATCGGCGATATCTTGATCGCTTATAAGAAGAGGATCAATCAGATTGCGCAACATGATTCCATCAATTACATCCAGGTTTTCAAGAACCAAGGTGCGTCGGCTGGAGCATCAATGAGTCACTCCCACAGTCAAATGATGGCTCTACCAGTTGTTCCTCCAACGGTTTCTTCACGCCTTGATGGTACTAAAGATTATTTCGAGGAGACTGGGAAATGTTGTCTCTGTGAAGCTAAATCAAAACATTTTGTGATCGATGAGTCGTCTCATTTTGTTTCTGTTGCTCCTTTTGCTGCTACGTATCCCTTTGAGATTTGGATTATTCCGAAAGATCATTCTTCCCACTTCCATCATCTCGATGACGTTAAGGCTGTTGACCTTGGAGGACTTCTGAAACTCATGCTTCAGAAGATAGCAAAGCAACTTAACGATCCACCGTATAACTATATGATCCATACTTCTCCACTCAAGGTTACAGAATCACAATTACCTTATACGCACTGGTTCTTACAGATTGTACCTCAGCTTTCTGGGGTAGGTGGGTTTGAGATTGGCACAGGTTGTTACATAAACCCTGTTTTCCCAGAGGATGTAGCAAAGGTTATGCGGGAAGTTAGCCTTACTTGA

Protein Analysis

351

Amino Acids

39.0

Weight (kDa)

6.19

Isoelectric Point (pI)

54.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GalP_UDP_transf PF01087 21 - 196 7.1e-15 Galactose-1-phosphate uridyl transferase, N-terminal domain
DUF4921 PF16268 161 - 345 2.9e-10 Domain of unknown function (DUF4921)
GalP_UDP_tr_C PF02744 208 - 312 2.9e-09 Galactose-1-phosphate uridyl transferase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015115)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G18200
fragaria_vesca FvH4_1g28080
malus_domestica MD12G1003100.v1.1
prunus_persica Prupe.7G003700_v2.0.a1
pyrus_communis pycom12g00280
rosa_chinensis RchiOBHm_Chr3g0497171
rosa_laevigata RLG00000022474
rosa_multiflora Rmu_sc0002893.1_g000014 Rmu_sc0007568.1_g000003
rosa_roxburghii Rroxscaffold_6G00388310
rosa_rugosa Rorug03G0291500
rosa_samantha Rh3AG334800 Rh3BG372500 Rh3CG368900 Rh3DG369800
rosa_wichuraiana Rw3G029430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 456
AatII GACGTC 1 cut(s) 8
Acc16I TGCGCA 1 cut(s) 480
AccII CGCG 1 cut(s) 30
AciI CCGC 6 cut(s) 30, 33, 36, 97, 117, 1036
AclWI GGATC 5 cut(s) 77, 416, 473, 854, 874
AcuI CTGAAG 1 cut(s) 818
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 3 cut(s) 287, 616, 948
AfiI CCNNNNNNNGG 1 cut(s) 335
AgsI TTSAA 2 cut(s) 145, 514
AjnI CCWGG 1 cut(s) 504
AjuI GAANNNNNNNTTGG 2 cut(s) 583, 615
AluBI AGCT 4 cut(s) 73, 409, 662, 955
AluI AGCT 4 cut(s) 73, 409, 662, 955
Alw21I GWGCWC 1 cut(s) 75
Alw26I GTCTC 6 cut(s) 124, 305, 326, 629, 656, 699
AlwI GGATC 5 cut(s) 77, 416, 473, 854, 874
Ama87I CYCGRG 1 cut(s) 308
ApeKI GCWGC 1 cut(s) 722
AspLEI GCGC 1 cut(s) 481
AsuC2I CCSGG 3 cut(s) 224, 269, 290
AsuHPI GGTGA 1 cut(s) 56
AvaI CYCGRG 1 cut(s) 308
BaeGI GKGCMC 1 cut(s) 223
BanII GRGCYC 1 cut(s) 75
Bbv12I GWGCWC 1 cut(s) 75
BbvCI CCTCAGC 1 cut(s) 951
BbvI GCAGC 1 cut(s) 709
BccI CCATC 4 cut(s) 500, 562, 605, 786
BciT130I CCWGG 1 cut(s) 506
BciVI GTATCC 1 cut(s) 741
BcnI CCSGG 3 cut(s) 224, 269, 290
BcoDI GTCTC 6 cut(s) 124, 305, 326, 629, 656, 699
BfuI GTATCC 1 cut(s) 741
BisI GCNGC 4 cut(s) 31, 34, 37, 723
BlsI GCNGC 4 cut(s) 32, 35, 38, 724
Bme1390I CCNGG 4 cut(s) 224, 269, 290, 506
BmeT110I CYCGRG 1 cut(s) 308
BmrFI CCNGG 4 cut(s) 224, 269, 290, 506
BmrI ACTGGG 1 cut(s) 648
BmsI GCATC 2 cut(s) 207, 548
BmuI ACTGGG 1 cut(s) 648
BoxI GACNNNNGTC 1 cut(s) 353
BpmI CTGGAG 1 cut(s) 555
Bpu10I CCTNAGC 3 cut(s) 69, 74, 951
BpuEI CTTGAG 1 cut(s) 881
BpuMI CCSGG 3 cut(s) 224, 269, 290
Bsa29I ATCGAT 2 cut(s) 420, 684
BsaAI YACGTR 1 cut(s) 729
BsaBI GATNNNNATC 1 cut(s) 420
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 2 cut(s) 124, 305
BsaJI CCNNGG 3 cut(s) 222, 520, 808
BsaWI WCCGGW 2 cut(s) 85, 424
Bsc4I CCNNNNNNNGG 1 cut(s) 335
Bse1I ACTGG 3 cut(s) 578, 643, 935
Bse8I GATNNNNATC 1 cut(s) 420
BseBI CCWGG 1 cut(s) 506
BseCI ATCGAT 2 cut(s) 420, 684
BseDI CCNNGG 3 cut(s) 222, 520, 808
BseGI GGATG 2 cut(s) 501, 1024
BseJI GATNNNNATC 1 cut(s) 420
BseLI CCNNNNNNNGG 1 cut(s) 335
BseMII CTCAG 5 cut(s) 60, 63, 88, 321, 965
BseNI ACTGG 3 cut(s) 578, 643, 935
BseRI GAGGAG 1 cut(s) 647
BseSI GKGCMC 1 cut(s) 223
BseXI GCAGC 1 cut(s) 709
BseYI CCCAGC 1 cut(s) 99
Bsh1236I CGCG 1 cut(s) 30
Bsh1285I CGRYCG 1 cut(s) 205
BshVI ATCGAT 2 cut(s) 420, 684
BsiEI CGRYCG 1 cut(s) 205
BsiHKAI GWGCWC 1 cut(s) 75
BsiHKCI CYCGRG 1 cut(s) 308
BsiSI CCGG 5 cut(s) 86, 224, 268, 290, 425
BslFI GGGAC 1 cut(s) 49
BslI CCNNNNNNNGG 1 cut(s) 335
BsmAI GTCTC 6 cut(s) 124, 305, 326, 629, 656, 699
BsmBI CGTCTC 2 cut(s) 326, 699
BsmFI GGGAC 1 cut(s) 49
Bso31I GGTCTC 2 cut(s) 124, 305
BsoBI CYCGRG 1 cut(s) 308
Bsp1286I GDGCHC 2 cut(s) 75, 223
BspACI CCGC 6 cut(s) 30, 33, 36, 97, 117, 1036
BspCNI CTCAG 5 cut(s) 61, 62, 87, 322, 964
BspDI ATCGAT 2 cut(s) 420, 684
BspFNI CGCG 1 cut(s) 30
BspHI TCATGA 1 cut(s) 247
BspPI GGATC 5 cut(s) 77, 416, 473, 854, 874
BspTNI GGTCTC 2 cut(s) 124, 305
BsrI ACTGG 3 cut(s) 578, 643, 935
BssECI CCNNGG 3 cut(s) 222, 520, 808
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 2 cut(s) 520, 808
Bst2UI CCWGG 1 cut(s) 506
Bst4CI ACNGT 4 cut(s) 44, 560, 595, 867
Bst6I CTCTTC 1 cut(s) 455
BstACI GRCGYC 1 cut(s) 5
BstBAI YACGTR 1 cut(s) 729
BstDEI CTNAG 6 cut(s) 49, 69, 74, 296, 330, 951
BstF5I GGATG 2 cut(s) 501, 1024
BstFNI CGCG 1 cut(s) 30
BstHHI GCGC 1 cut(s) 481
BstMAI GTCTC 6 cut(s) 124, 305, 326, 629, 656, 699
BstMCI CGRYCG 1 cut(s) 205
BstMWI GCNNNNNNNGC 3 cut(s) 36, 195, 719
BstNI CCWGG 1 cut(s) 506
BstPAI GACNNNNGTC 1 cut(s) 353
BstSCI CCNGG 4 cut(s) 222, 267, 288, 504
BstSLI GKGCMC 1 cut(s) 223
BstSNI TACGTA 1 cut(s) 729
BstUI CGCG 1 cut(s) 30
BstV1I GCAGC 1 cut(s) 709
BstX2I RGATCY 1 cut(s) 82
BstYI RGATCY 1 cut(s) 82
Bsu15I ATCGAT 2 cut(s) 420, 684
BsuI GTATCC 1 cut(s) 741
BsuTUI ATCGAT 2 cut(s) 420, 684
BtsCI GGATG 2 cut(s) 501, 1024
BtsIMutI CAGTG 1 cut(s) 928
CciI TCATGA 1 cut(s) 247
CfoI GCGC 1 cut(s) 481
ClaI ATCGAT 2 cut(s) 420, 684
CseI GACGC 1 cut(s) 516
Csp6I GTAC 3 cut(s) 286, 615, 947
CviAII CATG 5 cut(s) 17, 186, 248, 485, 829
CviQI GTAC 3 cut(s) 286, 615, 947
DdeI CTNAG 6 cut(s) 49, 69, 74, 296, 330, 951
Eam1104I CTCTTC 1 cut(s) 455
EarI CTCTTC 1 cut(s) 455
Ecl136II GAGCTC 1 cut(s) 73
Eco105I TACGTA 1 cut(s) 729
Eco130I CCWWGG 2 cut(s) 520, 808
Eco24I GRGCYC 1 cut(s) 75
Eco31I GGTCTC 2 cut(s) 124, 305
Eco32I GATATC 2 cut(s) 418, 442
Eco53kI GAGCTC 1 cut(s) 73
Eco57I CTGAAG 1 cut(s) 818
Eco88I CYCGRG 1 cut(s) 308
EcoICRI GAGCTC 1 cut(s) 73
EcoRII CCWGG 1 cut(s) 504
EcoRV GATATC 2 cut(s) 418, 442
EcoT14I CCWWGG 2 cut(s) 520, 808
EcoT38I GRGCYC 1 cut(s) 75
ErhI CCWWGG 2 cut(s) 520, 808
Esp3I CGTCTC 2 cut(s) 326, 699
FaeI CATG 5 cut(s) 20, 189, 251, 488, 832
FalI AAGNNNNNCTT 1 cut(s) 1032
FaqI GGGAC 1 cut(s) 49
FatI CATG 5 cut(s) 16, 185, 247, 484, 828
FauI CCCGC 2 cut(s) 124, 1029
Fnu4HI GCNGC 4 cut(s) 31, 34, 37, 723
FokI GGATG 2 cut(s) 488, 1031
FriOI GRGCYC 1 cut(s) 75
Fsp4HI GCNGC 4 cut(s) 31, 34, 37, 723
FspI TGCGCA 1 cut(s) 480
GlaI GCGC 1 cut(s) 480
GluI GCNGC 4 cut(s) 31, 34, 37, 723
GsaI CCCAGC 1 cut(s) 103
GsuI CTGGAG 1 cut(s) 555
HapII CCGG 5 cut(s) 86, 224, 268, 290, 425
HgaI GACGC 1 cut(s) 516
HhaI GCGC 1 cut(s) 481
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 5 cut(s) 20, 189, 251, 488, 832
Hin6I GCGC 1 cut(s) 479
HinP1I GCGC 1 cut(s) 479
HincII GTYRAC 1 cut(s) 805
HindII GTYRAC 1 cut(s) 805
HpaII CCGG 5 cut(s) 86, 224, 268, 290, 425
HphI GGTGA 1 cut(s) 56
Hpy166II GTNNAC 1 cut(s) 805
Hpy188I TCNGA 9 cut(s) 25, 348, 359, 365, 415, 474, 756, 822, 837
Hpy8I GTNNAC 1 cut(s) 805
Hpy99I CGWCG 3 cut(s) 44, 377, 532
HpyAV CCTTC 1 cut(s) 189
HpyCH4III ACNGT 4 cut(s) 44, 560, 595, 867
HpyCH4IV ACGT 4 cut(s) 5, 375, 728, 792
HpyCH4V TGCA 1 cut(s) 198
HpyF10VI GCNNNNNNNGC 3 cut(s) 36, 195, 719
HpyF3I CTNAG 6 cut(s) 49, 69, 74, 296, 330, 951
HpySE526I ACGT 4 cut(s) 5, 375, 728, 792
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 5 cut(s) 20, 189, 251, 488, 832
HspAI GCGC 1 cut(s) 479
LmnI GCTCC 2 cut(s) 536, 718
Lsp1109I GCAGC 1 cut(s) 709
LweI GCATC 2 cut(s) 207, 548
MaeII ACGT 4 cut(s) 5, 375, 728, 792
MaeIII GTNAC 6 cut(s) 6, 44, 88, 548, 901, 992
MboII GAAGA 4 cut(s) 472, 591, 759, 850
MflI RGATCY 1 cut(s) 82
MhlI GDGCHC 2 cut(s) 75, 223
MluCI AATT 3 cut(s) 256, 496, 914
MlyI GAGTC 3 cut(s) 41, 556, 698
MmeI TCCRAC 3 cut(s) 326, 337, 614
MnlI CCTC 8 cut(s) 31, 193, 456, 597, 625, 806, 960, 1009
MseI TTAA 2 cut(s) 795, 855
MslI CAYNNNNRTG 1 cut(s) 786
MspA1I CMGCKG 1 cut(s) 99
MspI CCGG 5 cut(s) 86, 224, 268, 290, 425
MspR9I CCNGG 4 cut(s) 224, 269, 290, 506
MvaI CCWGG 1 cut(s) 506
MvnI CGCG 1 cut(s) 30
MwoI GCNNNNNNNGC 3 cut(s) 36, 195, 719
NciI CCSGG 3 cut(s) 224, 269, 290
NlaIII CATG 5 cut(s) 20, 189, 251, 488, 832
NmuCI GTSAC 3 cut(s) 6, 44, 548
NsbI TGCGCA 1 cut(s) 480
PaeR7I CTCGAG 1 cut(s) 308
PagI TCATGA 1 cut(s) 247
PcsI WCGNNNNNNNCGW 2 cut(s) 369, 381
PfeI GAWTC 9 cut(s) 58, 280, 304, 360, 366, 386, 403, 488, 908
PflFI GACNNNGTC 1 cut(s) 50
PkrI GCNGC 4 cut(s) 32, 35, 38, 724
PleI GAGTC 3 cut(s) 41, 555, 697
PpsI GAGTC 3 cut(s) 41, 555, 697
Ppu21I YACGTR 1 cut(s) 729
PshAI GACNNNNGTC 1 cut(s) 353
PsiI TTATAA 1 cut(s) 456
Psp124BI GAGCTC 1 cut(s) 75
Psp6I CCWGG 1 cut(s) 504
PspFI CCCAGC 1 cut(s) 99
PspGI CCWGG 1 cut(s) 504
PsuI RGATCY 1 cut(s) 82
PsyI GACNNNGTC 1 cut(s) 50
RsaI GTAC 3 cut(s) 287, 616, 948
RsaNI GTAC 3 cut(s) 286, 615, 947
RseI CAYNNNNRTG 1 cut(s) 786
SacI GAGCTC 1 cut(s) 75
SaqAI TTAA 2 cut(s) 795, 855
SatI GCNGC 4 cut(s) 31, 34, 37, 723
SchI GAGTC 3 cut(s) 41, 556, 698
ScrFI CCNGG 4 cut(s) 224, 269, 290, 506
SduI GDGCHC 2 cut(s) 75, 223
SfaNI GCATC 2 cut(s) 207, 548
Sfr274I CTCGAG 1 cut(s) 308
SlaI CTCGAG 1 cut(s) 308
SmiMI CAYNNNNRTG 1 cut(s) 786
SmlI CTYRAG 2 cut(s) 308, 896
SmoI CTYRAG 2 cut(s) 308, 896
SnaBI TACGTA 1 cut(s) 729
Sse9I AATT 3 cut(s) 256, 496, 914
SsiI CCGC 6 cut(s) 30, 33, 36, 97, 117, 1036
SstI GAGCTC 1 cut(s) 75
StyD4I CCNGG 4 cut(s) 222, 267, 288, 504
StyI CCWWGG 2 cut(s) 520, 808
TaaI ACNGT 4 cut(s) 44, 560, 595, 867
TaiI ACGT 4 cut(s) 8, 378, 731, 795
TaqII GACCGA 2 cut(s) 148, 191
TasI AATT 3 cut(s) 256, 496, 914
TauI GCSGC 3 cut(s) 33, 36, 39
TfiI GAWTC 9 cut(s) 58, 280, 304, 360, 366, 386, 403, 488, 908
Tru1I TTAA 2 cut(s) 795, 855
Tru9I TTAA 2 cut(s) 795, 855
TscAI CASTG 1 cut(s) 935
TseFI GTSAC 3 cut(s) 6, 44, 548
TseI GCWGC 1 cut(s) 722
Tsp45I GTSAC 3 cut(s) 6, 44, 548
TspDTI ATGAA 1 cut(s) 386
TspRI CASTG 1 cut(s) 935
Tth111I GACNNNGTC 1 cut(s) 50
XhoI CTCGAG 1 cut(s) 308
ZraI GACGTC 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.