Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0015115

Physical Location & Seq

Genomic Coordinates Forward (+)

46857212 .. 46858850

Gene Structure 1639 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG369800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGGAGAAAGGAAAAATGGGAGGCAGGCCCCCAGAAATAAGGAAGGACTGGGTGACAAACCGGTGGGTGATATTCTCACCGGCCAGAGCCAAGCGACCTTCGGACTTCAAATCCAAATCACCGGCGACGCCGCCAACCCAACAACAACAATCTTGTCCCTTTTGTCTCGGCAACGAGCACGACTGCGCTCCCGAAATCTTCCGGGTTCCGCCCGACGACCCCGAATGGAAACTCCGAGTGATCCAGAACATGTACCCGGCGCTGAGCCGTGCGGAGGTCCCCGTCCCTGCCCAGGAGGAATCCTCCTCCTCCTCCTCCTCCTTGGGTCAGGTCATGACTGGGTTCGGGTTCCACGACGTGGTGATTGAGACCCCGCTTCACTCTCTTCACCTCTCCGATCTTTCCCCAACTCAGATCGCCCATGTTCTTCGGGCCTATACCACCAGGATCCACCACTTCACCACTAATCATTCCATCAAATACGTTCAGGTGTTCAAAAACCATGGTGCTTCAGCTGGGGCATCAATGAGTCACTCTCACAGTCAGATGATGGCTCTGCCTATTGTTCCTCCTGCTGTTGCTGCTCGACTTGACTCTATGAAGGACTATTTTAATCGGACTGGCAAATGTAGTATCTGTGAATTCAACTCGAACGATCTTTTGATCCATGCATCACCCCATTTTATTTCAATTGTACCTTATGCTGCTACATTTCCCTTCGAGATGTGGATCATTCCTCTCACTCACTCTCCTCATTTCCATGAACTTGATGCTGACAAGGCAGTTGACCTTGGGGGGATCCTGAAACTCATGCTTCGGAAGATGGCTTTACAGTTGAATAATCCACCATTTAATTTCATGATTCAGACTTCTCCTCTTCAGGATGGTGCTTCAGACTTACCTCACTCCCATTGGTTCTTGCAAATAATACCCCAGTTAAGTGTTGCAGCTGGTTTTGAAATTGGAACTGGCTGCTACATAAATCCAGTCTTCCCAGACGATGCAGCAAAAGTTTTGAGGGAAGTAAATGTTTTACCCTTGGAAGGAGATGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005975 GO:0008150 GO:0008152 GO:0008270 GO:0010646 GO:0010647 GO:0016740 GO:0016772 GO:0016779 GO:0017076 GO:0030554 GO:0032101 GO:0032103 GO:0032104 GO:0032106 GO:0032107 GO:0032109 GO:0032553 GO:0032555 GO:0032559 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043531 GO:0044238 GO:0046872 GO:0046914 GO:0047345 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0065007 GO:0070566 GO:0071704 GO:0080040 GO:0080134 GO:0080135 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00052 ko00520 ko01100 ko04917 map00052 map00520 map01100 map04917

Pfam Domains

Protein Families

GalP_UDP_tr_C GalP_UDP_transf

Protein Analysis

351

Amino Acids

39.05

Weight (kDa)

6.4

Isoelectric Point (pI)

53.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GalP_UDP_transf	PF01087	14 - 190	3.6e-17	Galactose-1-phosphate uridyl transferase, N-terminal domain
DUF4921	PF16268	152 - 335	7.8e-09	Domain of unknown function (DUF4921)
GalP_UDP_tr_C	PF02744	200 - 309	4e-06	Galactose-1-phosphate uridyl transferase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015115)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18200
fragaria_vesca	FvH4_1g28080
malus_domestica	MD12G1003100.v1.1
prunus_persica	Prupe.7G003700_v2.0.a1
pyrus_communis	pycom12g00280
rosa_chinensis	RchiOBHm_Chr3g0497171
rosa_laevigata	RLG00000022474
rosa_multiflora	Rmu_sc0002893.1_g000014 Rmu_sc0007568.1_g000003
rosa_roxburghii	Rroxscaffold_6G00388310
rosa_rugosa	Rorug03G0291500
rosa_samantha	Rh3AG334800 Rh3BG372500 Rh3CG368900 Rh3DG369800
rosa_wichuraiana	Rw3G029430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	358
AciI	CCGC	4 cut(s)	131, 209, 272, 374
AclWI	GGATC	7 cut(s)	235, 442, 455, 658, 737, 793, 806
AcoI	YGGCCR	1 cut(s)	81
AcsI	RAATTY	1 cut(s)	641
AcuI	CTGAAG	3 cut(s)	495, 863, 876
AcyI	GRCGYC	1 cut(s)	128
AdeI	CACNNNGTG	1 cut(s)	358
AfaI	GTAC	2 cut(s)	254, 696
AfiI	CCNNNNNNNGG	4 cut(s)	274, 292, 358, 1043
AflIII	ACRYGT	1 cut(s)	249
AgeI	ACCGGT	1 cut(s)	60
AgsI	TTSAA	6 cut(s)	109, 496, 646, 690, 838, 959
AjiI	CACGTC	1 cut(s)	358
AjnI	CCWGG	2 cut(s)	291, 443
AluBI	AGCT	2 cut(s)	515, 950
AluI	AGCT	2 cut(s)	515, 950
Alw21I	GWGCWC	1 cut(s)	180
Alw26I	GTCTC	2 cut(s)	170, 362
AlwI	GGATC	7 cut(s)	235, 442, 455, 658, 737, 793, 806
AoxI	GGCC	3 cut(s)	26, 81, 432
ApeKI	GCWGC	5 cut(s)	581, 704, 947, 972, 1004
ApoI	RAATTY	1 cut(s)	641
AsiGI	ACCGGT	1 cut(s)	60
AspLEI	GCGC	2 cut(s)	188, 262
AspS9I	GGNCC	3 cut(s)	27, 277, 432
AsuC2I	CCSGG	2 cut(s)	203, 257
AsuHPI	GGTGA	8 cut(s)	64, 69, 79, 111, 373, 380, 451, 666
AvaII	GGWCC	1 cut(s)	277
BamHI	GGATCC	2 cut(s)	447, 798
BbsI	GAAGAC	1 cut(s)	982
Bbv12I	GWGCWC	1 cut(s)	180
BbvI	GCAGC	5 cut(s)	568, 691, 959, 959, 1016
BccI	CCATC	4 cut(s)	482, 544, 817, 878
BceAI	ACGGC	1 cut(s)	252
BciT130I	CCWGG	2 cut(s)	293, 445
BcnI	CCSGG	2 cut(s)	203, 257
BcoDI	GTCTC	2 cut(s)	170, 362
BfoI	RGCGCY	1 cut(s)	263
BisI	GCNGC	6 cut(s)	131, 582, 705, 948, 973, 1005
BlpI	GCTNAGC	1 cut(s)	263
BlsI	GCNGC	6 cut(s)	132, 583, 706, 949, 974, 1006
Bme1390I	CCNGG	4 cut(s)	203, 257, 293, 445
Bme18I	GGWCC	1 cut(s)	277
BmgBI	CACGTC	1 cut(s)	358
BmgT120I	GGNCC	3 cut(s)	27, 277, 432
BmiI	GGNNCC	6 cut(s)	29, 207, 279, 350, 449, 800
BmrFI	CCNGG	4 cut(s)	203, 257, 293, 445
BmrI	ACTGGG	3 cut(s)	58, 348, 928
BmsI	GCATC	4 cut(s)	530, 680, 760, 991
BmuI	ACTGGG	3 cut(s)	58, 348, 928
BpiI	GAAGAC	1 cut(s)	982
BplI	GAGNNNNNCTC	4 cut(s)	287, 319, 520, 552
Bpu1102I	GCTNAGC	1 cut(s)	263
BpuMI	CCSGG	2 cut(s)	203, 257
BsaBI	GATNNNNATC	1 cut(s)	728
BsaHI	GRCGYC	1 cut(s)	128
BsaI	GGTCTC	1 cut(s)	362
BsaJI	CCNNGG	5 cut(s)	291, 321, 502, 790, 1038
BsaWI	WCCGGW	1 cut(s)	60
BsaXI	ACNNNNNCTCC	2 cut(s)	733, 763
Bsc4I	CCNNNNNNNGG	4 cut(s)	274, 292, 358, 1043
Bse118I	RCCGGY	3 cut(s)	60, 79, 121
Bse1I	ACTGG	6 cut(s)	53, 343, 625, 934, 973, 986
Bse8I	GATNNNNATC	1 cut(s)	728
BseBI	CCWGG	2 cut(s)	293, 445
BseDI	CCNNGG	5 cut(s)	291, 321, 502, 790, 1038
BseGI	GGATG	1 cut(s)	889
BseJI	GATNNNNATC	1 cut(s)	728
BseLI	CCNNNNNNNGG	4 cut(s)	274, 292, 358, 1043
BseMII	CTCAG	2 cut(s)	254, 425
BseNI	ACTGG	6 cut(s)	53, 343, 625, 934, 973, 986
BseRI	GAGGAG	7 cut(s)	295, 298, 301, 304, 307, 741, 864
BseXI	GCAGC	5 cut(s)	568, 691, 959, 959, 1016
BseYI	CCCAGC	1 cut(s)	515
BshFI	GGCC	3 cut(s)	28, 83, 434
BshTI	ACCGGT	1 cut(s)	60
BsiHKAI	GWGCWC	1 cut(s)	180
BsiSI	CCGG	5 cut(s)	61, 80, 122, 202, 257
BslFI	GGGAC	3 cut(s)	141, 263, 269
BslI	CCNNNNNNNGG	4 cut(s)	274, 292, 358, 1043
BsmAI	GTCTC	2 cut(s)	170, 362
BsmFI	GGGAC	3 cut(s)	141, 263, 269
BsnI	GGCC	3 cut(s)	28, 83, 434
Bso31I	GGTCTC	1 cut(s)	362
Bsp1286I	GDGCHC	1 cut(s)	180
Bsp143I	GATC	8 cut(s)	240, 397, 414, 447, 655, 663, 729, 798
Bsp1720I	GCTNAGC	1 cut(s)	263
Bsp19I	CCATGG	1 cut(s)	502
BspACI	CCGC	4 cut(s)	131, 209, 272, 374
BspANI	GGCC	3 cut(s)	28, 83, 434
BspCNI	CTCAG	2 cut(s)	255, 424
BspHI	TCATGA	2 cut(s)	333, 858
BspLI	GGNNCC	6 cut(s)	29, 207, 279, 350, 449, 800
BspPI	GGATC	7 cut(s)	235, 442, 455, 658, 737, 793, 806
BspTNI	GGTCTC	1 cut(s)	362
BsrFI	RCCGGY	3 cut(s)	60, 79, 121
BsrI	ACTGG	6 cut(s)	53, 343, 625, 934, 973, 986
BssAI	RCCGGY	3 cut(s)	60, 79, 121
BssECI	CCNNGG	5 cut(s)	291, 321, 502, 790, 1038
BssMI	GATC	8 cut(s)	240, 397, 414, 447, 655, 663, 729, 798
BssNI	GRCGYC	1 cut(s)	128
BssT1I	CCWWGG	4 cut(s)	321, 502, 790, 1038
Bst2UI	CCWGG	2 cut(s)	293, 445
Bst4CI	ACNGT	2 cut(s)	542, 834
Bst6I	CTCTTC	2 cut(s)	390, 882
BstACI	GRCGYC	1 cut(s)	128
BstC8I	GCNNGC	1 cut(s)	26
BstDEI	CTNAG	2 cut(s)	263, 411
BstDSI	CCRYGG	1 cut(s)	502
BstF5I	GGATG	1 cut(s)	889
BstH2I	RGCGCY	1 cut(s)	263
BstHHI	GCGC	2 cut(s)	188, 262
BstKTI	GATC	8 cut(s)	243, 400, 417, 450, 658, 666, 732, 801
BstMAI	GTCTC	2 cut(s)	170, 362
BstMBI	GATC	8 cut(s)	240, 397, 414, 447, 655, 663, 729, 798
BstMWI	GCNNNNNNNGC	2 cut(s)	581, 779
BstNI	CCWGG	2 cut(s)	293, 445
BstNSI	RCATGY	1 cut(s)	253
BstSCI	CCNGG	4 cut(s)	201, 255, 291, 443
BstV1I	GCAGC	5 cut(s)	568, 691, 959, 959, 1016
BstV2I	GAAGAC	1 cut(s)	982
BstX2I	RGATCY	2 cut(s)	447, 798
BstYI	RGATCY	2 cut(s)	447, 798
BsuRI	GGCC	3 cut(s)	28, 83, 434
BtgI	CCRYGG	1 cut(s)	502
BtrI	CACGTC	1 cut(s)	358
BtsCI	GGATG	1 cut(s)	889
Cac8I	GCNNGC	1 cut(s)	26
CciI	TCATGA	2 cut(s)	333, 858
CfoI	GCGC	2 cut(s)	188, 262
Cfr10I	RCCGGY	3 cut(s)	60, 79, 121
Cfr13I	GGNCC	3 cut(s)	27, 277, 432
CseI	GACGC	1 cut(s)	136
Csp6I	GTAC	2 cut(s)	253, 695
CspAI	ACCGGT	1 cut(s)	60
CviAII	CATG	8 cut(s)	250, 334, 422, 503, 668, 761, 811, 859
CviQI	GTAC	2 cut(s)	253, 695
DdeI	CTNAG	2 cut(s)	263, 411
DpnI	GATC	8 cut(s)	242, 399, 416, 449, 657, 665, 731, 800
DpnII	GATC	8 cut(s)	240, 397, 414, 447, 655, 663, 729, 798
DraIII	CACNNNGTG	1 cut(s)	358
EaeI	YGGCCR	1 cut(s)	81
Eam1104I	CTCTTC	2 cut(s)	390, 882
EarI	CTCTTC	2 cut(s)	390, 882
EciI	GGCGGA	1 cut(s)	198
Eco130I	CCWWGG	4 cut(s)	321, 502, 790, 1038
Eco31I	GGTCTC	1 cut(s)	362
Eco47I	GGWCC	1 cut(s)	277
Eco57I	CTGAAG	3 cut(s)	495, 863, 876
EcoO109I	RGGNCCY	2 cut(s)	27, 277
EcoRI	GAATTC	1 cut(s)	641
EcoRII	CCWGG	2 cut(s)	291, 443
EcoT14I	CCWWGG	4 cut(s)	321, 502, 790, 1038
EcoT22I	ATGCAT	1 cut(s)	673
ErhI	CCWWGG	4 cut(s)	321, 502, 790, 1038
FaeI	CATG	8 cut(s)	253, 337, 425, 506, 671, 764, 814, 862
FaqI	GGGAC	3 cut(s)	141, 263, 269
FatI	CATG	8 cut(s)	249, 333, 421, 502, 667, 760, 810, 858
FauI	CCCGC	1 cut(s)	381
Fnu4HI	GCNGC	6 cut(s)	131, 582, 705, 948, 973, 1005
FokI	GGATG	1 cut(s)	896
Fsp4HI	GCNGC	6 cut(s)	131, 582, 705, 948, 973, 1005
GlaI	GCGC	2 cut(s)	187, 261
GluI	GCNGC	6 cut(s)	131, 582, 705, 948, 973, 1005
GsaI	CCCAGC	1 cut(s)	519
HaeII	RGCGCY	1 cut(s)	263
HaeIII	GGCC	3 cut(s)	28, 83, 434
HapII	CCGG	5 cut(s)	61, 80, 122, 202, 257
HgaI	GACGC	1 cut(s)	136
HhaI	GCGC	2 cut(s)	188, 262
Hin1I	GRCGYC	1 cut(s)	128
Hin1II	CATG	8 cut(s)	253, 337, 425, 506, 671, 764, 814, 862
Hin6I	GCGC	2 cut(s)	186, 260
HinP1I	GCGC	2 cut(s)	186, 260
HincII	GTYRAC	1 cut(s)	787
HindII	GTYRAC	1 cut(s)	787
HinfI	GANTC	4 cut(s)	299, 529, 593, 862
HpaII	CCGG	5 cut(s)	61, 80, 122, 202, 257
HphI	GGTGA	8 cut(s)	64, 69, 79, 111, 373, 380, 451, 666
Hpy166II	GTNNAC	1 cut(s)	787
Hpy188I	TCNGA	9 cut(s)	103, 236, 397, 414, 546, 618, 819, 867, 895
Hpy188III	TCNNGA	7 cut(s)	191, 244, 334, 721, 802, 859, 881
Hpy8I	GTNNAC	1 cut(s)	787
Hpy99I	CGWCG	3 cut(s)	130, 218, 359
HpyAV	CCTTC	5 cut(s)	37, 108, 595, 727, 1037
HpyCH4III	ACNGT	2 cut(s)	542, 834
HpyCH4IV	ACGT	2 cut(s)	357, 483
HpyCH4V	TGCA	4 cut(s)	671, 922, 947, 1004
HpyF10VI	GCNNNNNNNGC	2 cut(s)	581, 779
HpyF3I	CTNAG	2 cut(s)	263, 411
HpySE526I	ACGT	2 cut(s)	357, 483
Hsp92I	GRCGYC	1 cut(s)	128
Hsp92II	CATG	8 cut(s)	253, 337, 425, 506, 671, 764, 814, 862
HspAI	GCGC	2 cut(s)	186, 260
Kzo9I	GATC	8 cut(s)	240, 397, 414, 447, 655, 663, 729, 798
LmnI	GCTCC	1 cut(s)	193
Lsp1109I	GCAGC	5 cut(s)	568, 691, 959, 959, 1016
LweI	GCATC	4 cut(s)	530, 680, 760, 991
MaeII	ACGT	2 cut(s)	357, 483
MaeIII	GTNAC	2 cut(s)	52, 530
MalI	GATC	8 cut(s)	242, 399, 416, 449, 657, 665, 731, 800
MboI	GATC	8 cut(s)	240, 397, 414, 447, 655, 663, 729, 798
MboII	GAAGA	6 cut(s)	190, 377, 419, 832, 869, 982
MfeI	CAATTG	1 cut(s)	690
MflI	RGATCY	2 cut(s)	447, 798
MhlI	GDGCHC	1 cut(s)	180
MluCI	AATT	4 cut(s)	641, 690, 853, 960
MlyI	GAGTC	2 cut(s)	538, 587
Mph1103I	ATGCAT	1 cut(s)	673
MseI	TTAA	4 cut(s)	612, 852, 938, 1054
MslI	CAYNNNNRTG	1 cut(s)	759
MspA1I	CMGCKG	2 cut(s)	515, 950
MspI	CCGG	5 cut(s)	61, 80, 122, 202, 257
MspR9I	CCNGG	4 cut(s)	203, 257, 293, 445
MunI	CAATTG	1 cut(s)	690
MvaI	CCWGG	2 cut(s)	293, 445
MwoI	GCNNNNNNNGC	2 cut(s)	581, 779
NciI	CCSGG	2 cut(s)	203, 257
NcoI	CCATGG	1 cut(s)	502
NdeII	GATC	8 cut(s)	240, 397, 414, 447, 655, 663, 729, 798
NlaIII	CATG	8 cut(s)	253, 337, 425, 506, 671, 764, 814, 862
NlaIV	GGNNCC	6 cut(s)	29, 207, 279, 350, 449, 800
NmeAIII	GCCGAG	1 cut(s)	147
NmuCI	GTSAC	2 cut(s)	52, 530
NsiI	ATGCAT	1 cut(s)	673
NspI	RCATGY	1 cut(s)	253
PagI	TCATGA	2 cut(s)	333, 858
PciI	ACATGT	1 cut(s)	249
PcsI	WCGNNNNNNNCGW	1 cut(s)	351
PfeI	GAWTC	2 cut(s)	299, 862
PflMI	CCANNNNNTGG	1 cut(s)	358
PinAI	ACCGGT	1 cut(s)	60
PkrI	GCNGC	6 cut(s)	132, 583, 706, 949, 974, 1006
PleI	GAGTC	2 cut(s)	537, 587
PpsI	GAGTC	2 cut(s)	537, 587
PpuMI	RGGWCCY	1 cut(s)	277
PscI	ACATGT	1 cut(s)	249
Psp5II	RGGWCCY	1 cut(s)	277
Psp6I	CCWGG	2 cut(s)	291, 443
PspFI	CCCAGC	1 cut(s)	515
PspGI	CCWGG	2 cut(s)	291, 443
PspN4I	GGNNCC	6 cut(s)	29, 207, 279, 350, 449, 800
PspPI	GGNCC	3 cut(s)	27, 277, 432
PspPPI	RGGWCCY	1 cut(s)	277
PsuI	RGATCY	2 cut(s)	447, 798
PvuII	CAGCTG	2 cut(s)	515, 950
RsaI	GTAC	2 cut(s)	254, 696
RsaNI	GTAC	2 cut(s)	253, 695
RseI	CAYNNNNRTG	1 cut(s)	759
SaqAI	TTAA	4 cut(s)	612, 852, 938, 1054
SatI	GCNGC	6 cut(s)	131, 582, 705, 948, 973, 1005
Sau3AI	GATC	8 cut(s)	240, 397, 414, 447, 655, 663, 729, 798
Sau96I	GGNCC	3 cut(s)	27, 277, 432
SchI	GAGTC	2 cut(s)	538, 587
ScrFI	CCNGG	4 cut(s)	203, 257, 293, 445
SduI	GDGCHC	1 cut(s)	180
SfaNI	GCATC	4 cut(s)	530, 680, 760, 991
SgrAI	CRCCGGYG	1 cut(s)	121
SinI	GGWCC	1 cut(s)	277
SmiMI	CAYNNNNRTG	1 cut(s)	759
Sse9I	AATT	4 cut(s)	641, 690, 853, 960
SsiI	CCGC	4 cut(s)	131, 209, 272, 374
StyD4I	CCNGG	4 cut(s)	201, 255, 291, 443
StyI	CCWWGG	4 cut(s)	321, 502, 790, 1038
TaaI	ACNGT	2 cut(s)	542, 834
TaiI	ACGT	2 cut(s)	360, 486
TaqI	TCGA	3 cut(s)	586, 650, 720
TasI	AATT	4 cut(s)	641, 690, 853, 960
TauI	GCSGC	1 cut(s)	133
TfiI	GAWTC	2 cut(s)	299, 862
Tru1I	TTAA	4 cut(s)	612, 852, 938, 1054
Tru9I	TTAA	4 cut(s)	612, 852, 938, 1054
TseFI	GTSAC	2 cut(s)	52, 530
TseI	GCWGC	5 cut(s)	581, 704, 947, 972, 1004
Tsp45I	GTSAC	2 cut(s)	52, 530
TspDTI	ATGAA	3 cut(s)	614, 777, 847
Van91I	CCANNNNNTGG	1 cut(s)	358
VpaK11BI	GGWCC	1 cut(s)	277
XapI	RAATTY	1 cut(s)	641
XceI	RCATGY	1 cut(s)	253
Zsp2I	ATGCAT	1 cut(s)	673

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.