Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0015115

Physical Location & Seq

Genomic Coordinates Reverse (-)

400727 .. 403494

Gene Structure 2768 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G003700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGCATCATCATCTTCATCAGACTCTTCAGCTCCTCAAACCCCACAACTCAGAAAAGACTCCGTGACAAACCGGTGGGTGATATTCTCACCCGCCCGAGCCAAGCGACCTTCAGACTTCAAATCCAAGTCCCCTGTCAATCCCAACCAACAACACCAACAACAATGTCCCTTCTGCATCGGCCACGAGCACGAGTGTGCTCCCGAGATCTTCCGGGTCCCGCCGGACAACCCGGACTGGAAACTCCGGGTAATCCAGAACCTCTACCCCGCGCTCAGCAGAGACATCCCTGCTGCTGAAGAAGGAAATAACTCGGATTCGGGTCGGGTTGTGGTGAATGGGTTTGGGTTCCACGACGTAGTGATTGAGACCCCTGTTCATTCGGTTCAGCTTTCTGATTTGTCCCCGAGAGAGATCGGTGAGGTTCTTGTTACGTATACGAGGAGGATCAAGCAGCTTATGAGCTACGATTCCATCAAATACGTCCAGGTGTTTAAGAACCACGGTGCTTCAGCTGGGGCATCAATGAGTCACTCTCACAGTCAGATAATGGCTCTTCCAGTTGTTCCTCCTGCTGTTGCTACCCGACTTGGCAGTATGAAGGAGTATTTTGATCAGACTGGGAAATGTAGTGTCTGTGAATCTAACTCAAAGGATCTACTGATTGATGTTTCAGCCCATTTCATTTCAATTGTACCTTTTGCTGCTACATTTCCATTTGAGATGTGGATCATTCCTCTGGATCACTCTTCTCATTTCCATGAGCTAGATAGCGAGAAGGCAGTTGAACTTGGAGGGATCCTAAAACTCGTGCTCAGGAAGATGTCTTTGCAGTTGAACAATCCACCGTTTAATTTCATGGTTCAGACTTCTCCACTTGGGGATAATGCTTCACAGTTACTTTACTCCCATTGGTTCATGCAGATAGTTCCTCAATTAAGTGTTGTTGCTGGGTTTGAAATGGGAACTGGGTGTTACATAAACCCAGTCTTCCCAGAGGATGCTGCAAAAGTTTTGAGGGAAGTAAAAGTTTCACCTTCGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005975 GO:0008150 GO:0008152 GO:0008270 GO:0010646 GO:0010647 GO:0016740 GO:0016772 GO:0016779 GO:0017076 GO:0030554 GO:0032101 GO:0032103 GO:0032104 GO:0032106 GO:0032107 GO:0032109 GO:0032553 GO:0032555 GO:0032559 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043531 GO:0044238 GO:0046872 GO:0046914 GO:0047345 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0065007 GO:0070566 GO:0071704 GO:0080040 GO:0080134 GO:0080135 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00052 ko00520 ko01100 ko04917 map00052 map00520 map01100 map04917

Pfam Domains

Protein Families

GalP_UDP_tr_C GalP_UDP_transf

Protein Analysis

349

Amino Acids

38.62

Weight (kDa)

6.22

Isoelectric Point (pI)

55.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015115)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18200
fragaria_vesca	FvH4_1g28080
malus_domestica	MD12G1003100.v1.1
prunus_persica	Prupe.7G003700_v2.0.a1
pyrus_communis	pycom12g00280
rosa_chinensis	RchiOBHm_Chr3g0497171
rosa_laevigata	RLG00000022474
rosa_multiflora	Rmu_sc0002893.1_g000014 Rmu_sc0007568.1_g000003
rosa_roxburghii	Rroxscaffold_6G00388310
rosa_rugosa	Rorug03G0291500
rosa_samantha	Rh3AG334800 Rh3BG372500 Rh3CG368900 Rh3DG369800
rosa_wichuraiana	Rw3G029430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	437
AccII	CGCG	1 cut(s)	272
AciI	CCGC	3 cut(s)	93, 221, 270
AclWI	GGATC	6 cut(s)	455, 663, 737, 750, 793, 806
AcoI	YGGCCR	1 cut(s)	181
AcuI	CTGAAG	4 cut(s)	12, 96, 318, 495
AfaI	GTAC	1 cut(s)	696
AgeI	ACCGGT	1 cut(s)	72
AgsI	TTSAA	5 cut(s)	121, 690, 788, 838, 959
AjnI	CCWGG	1 cut(s)	486
AleI	CACNNNNGTG	1 cut(s)	195
AluBI	AGCT	6 cut(s)	32, 391, 457, 465, 515, 766
AluI	AGCT	6 cut(s)	32, 391, 457, 465, 515, 766
Alw21I	GWGCWC	3 cut(s)	192, 202, 816
Alw26I	GTCTC	2 cut(s)	276, 362
AlwI	GGATC	6 cut(s)	455, 663, 737, 750, 793, 806
Ama87I	CYCGRG	3 cut(s)	96, 203, 406
AoxI	GGCC	1 cut(s)	181
ApeKI	GCWGC	4 cut(s)	293, 454, 704, 1004
AsiGI	ACCGGT	1 cut(s)	72
AspLEI	GCGC	1 cut(s)	274
AspS9I	GGNCC	1 cut(s)	217
AsuC2I	CCSGG	3 cut(s)	215, 233, 248
AsuHPI	GGTGA	5 cut(s)	81, 91, 346, 431, 1026
AvaI	CYCGRG	3 cut(s)	96, 203, 406
AvaII	GGWCC	1 cut(s)	217
BamHI	GGATCC	1 cut(s)	798
BauI	CACGAG	3 cut(s)	185, 191, 809
BbsI	GAAGAC	1 cut(s)	982
Bbv12I	GWGCWC	3 cut(s)	192, 202, 816
BbvI	GCAGC	4 cut(s)	280, 466, 691, 991
BccI	CCATC	1 cut(s)	482
BciT130I	CCWGG	1 cut(s)	488
BclI	TGATCA	1 cut(s)	613
BcnI	CCSGG	3 cut(s)	215, 233, 248
BcoDI	GTCTC	2 cut(s)	276, 362
BfaI	CTAG	1 cut(s)	767
BglII	AGATCT	1 cut(s)	207
BisI	GCNGC	4 cut(s)	294, 455, 705, 1005
BlpI	GCTNAGC	1 cut(s)	275
BlsI	GCNGC	4 cut(s)	295, 456, 706, 1006
Bme1390I	CCNGG	4 cut(s)	215, 233, 248, 488
Bme18I	GGWCC	1 cut(s)	217
BmeT110I	CYCGRG	3 cut(s)	96, 203, 406
BmgT120I	GGNCC	1 cut(s)	217
BmiI	GGNNCC	4 cut(s)	218, 219, 350, 800
BmrFI	CCNGG	4 cut(s)	215, 233, 248, 488
BmrI	ACTGGG	3 cut(s)	630, 978, 980
BmsI	GCATC	4 cut(s)	14, 186, 530, 991
BmuI	ACTGGG	3 cut(s)	630, 978, 980
BpiI	GAAGAC	1 cut(s)	982
BplI	GAGNNNNNCTC	2 cut(s)	520, 552
Bpu10I	CCTNAGC	1 cut(s)	815
Bpu1102I	GCTNAGC	1 cut(s)	275
BpuMI	CCSGG	3 cut(s)	215, 233, 248
BsaAI	YACGTR	1 cut(s)	435
BsaBI	GATNNNNATC	1 cut(s)	728
BsaI	GGTCTC	1 cut(s)	362
BsaJI	CCNNGG	1 cut(s)	502
BsaWI	WCCGGW	1 cut(s)	72
Bse118I	RCCGGY	1 cut(s)	72
Bse1I	ACTGG	5 cut(s)	242, 560, 625, 973, 986
Bse8I	GATNNNNATC	1 cut(s)	728
BseBI	CCWGG	1 cut(s)	488
BseDI	CCNNGG	1 cut(s)	502
BseGI	GGATG	2 cut(s)	285, 1006
BseJI	GATNNNNATC	1 cut(s)	728
BseMII	CTCAG	3 cut(s)	64, 289, 829
BseNI	ACTGG	5 cut(s)	242, 560, 625, 973, 986
BseRI	GAGGAG	2 cut(s)	24, 457
BseXI	GCAGC	4 cut(s)	280, 466, 691, 991
BseYI	CCCAGC	2 cut(s)	515, 950
Bsh1236I	CGCG	1 cut(s)	272
BshFI	GGCC	1 cut(s)	183
BshTI	ACCGGT	1 cut(s)	72
BsiHKAI	GWGCWC	3 cut(s)	192, 202, 816
BsiHKCI	CYCGRG	3 cut(s)	96, 203, 406
BsiSI	CCGG	5 cut(s)	73, 214, 224, 233, 247
BslFI	GGGAC	4 cut(s)	115, 153, 203, 388
BsmAI	GTCTC	2 cut(s)	276, 362
BsmFI	GGGAC	4 cut(s)	115, 153, 203, 388
BsnI	GGCC	1 cut(s)	183
Bso31I	GGTCTC	1 cut(s)	362
BsoBI	CYCGRG	3 cut(s)	96, 203, 406
Bsp1286I	GDGCHC	3 cut(s)	192, 202, 816
Bsp143I	GATC	8 cut(s)	207, 414, 447, 613, 655, 729, 742, 798
Bsp1720I	GCTNAGC	1 cut(s)	275
BspACI	CCGC	3 cut(s)	93, 221, 270
BspANI	GGCC	1 cut(s)	183
BspCNI	CTCAG	3 cut(s)	63, 288, 828
BspFNI	CGCG	1 cut(s)	272
BspLI	GGNNCC	4 cut(s)	218, 219, 350, 800
BspPI	GGATC	6 cut(s)	455, 663, 737, 750, 793, 806
BspQI	GCTCTTC	1 cut(s)	561
BspTNI	GGTCTC	1 cut(s)	362
BsrFI	RCCGGY	1 cut(s)	72
BsrI	ACTGG	5 cut(s)	242, 560, 625, 973, 986
BssAI	RCCGGY	1 cut(s)	72
BssECI	CCNNGG	1 cut(s)	502
BssMI	GATC	8 cut(s)	207, 414, 447, 613, 655, 729, 742, 798
BssNAI	GTATAC	1 cut(s)	438
BssSI	CACGAG	3 cut(s)	185, 191, 809
Bst1107I	GTATAC	1 cut(s)	438
Bst2BI	CACGAG	3 cut(s)	185, 191, 809
Bst2UI	CCWGG	1 cut(s)	488
Bst4CI	ACNGT	4 cut(s)	506, 542, 849, 897
Bst6I	CTCTTC	3 cut(s)	31, 561, 754
BstBAI	YACGTR	1 cut(s)	435
BstDEI	CTNAG	3 cut(s)	50, 275, 815
BstDSI	CCRYGG	1 cut(s)	502
BstF5I	GGATG	2 cut(s)	285, 1006
BstFNI	CGCG	1 cut(s)	272
BstHHI	GCGC	1 cut(s)	274
BstKTI	GATC	8 cut(s)	210, 417, 450, 616, 658, 732, 745, 801
BstMAI	GTCTC	2 cut(s)	276, 362
BstMBI	GATC	8 cut(s)	207, 414, 447, 613, 655, 729, 742, 798
BstNI	CCWGG	1 cut(s)	488
BstSCI	CCNGG	4 cut(s)	213, 231, 246, 486
BstSNI	TACGTA	1 cut(s)	435
BstUI	CGCG	1 cut(s)	272
BstV1I	GCAGC	4 cut(s)	280, 466, 691, 991
BstV2I	GAAGAC	1 cut(s)	982
BstX2I	RGATCY	3 cut(s)	207, 655, 798
BstYI	RGATCY	3 cut(s)	207, 655, 798
BstZ17I	GTATAC	1 cut(s)	438
BsuRI	GGCC	1 cut(s)	183
BtgI	CCRYGG	1 cut(s)	502
BtsCI	GGATG	2 cut(s)	285, 1006
CfoI	GCGC	1 cut(s)	274
Cfr10I	RCCGGY	1 cut(s)	72
Cfr13I	GGNCC	1 cut(s)	217
Csp6I	GTAC	1 cut(s)	695
CspAI	ACCGGT	1 cut(s)	72
CviAII	CATG	3 cut(s)	761, 859, 919
CviQI	GTAC	1 cut(s)	695
DdeI	CTNAG	3 cut(s)	50, 275, 815
DpnI	GATC	8 cut(s)	209, 416, 449, 615, 657, 731, 744, 800
DpnII	GATC	8 cut(s)	207, 414, 447, 613, 655, 729, 742, 798
EaeI	YGGCCR	1 cut(s)	181
Eam1104I	CTCTTC	3 cut(s)	31, 561, 754
EarI	CTCTTC	3 cut(s)	31, 561, 754
Eco105I	TACGTA	1 cut(s)	435
Eco31I	GGTCTC	1 cut(s)	362
Eco47I	GGWCC	1 cut(s)	217
Eco57I	CTGAAG	4 cut(s)	12, 96, 318, 495
Eco88I	CYCGRG	3 cut(s)	96, 203, 406
EcoO109I	RGGNCCY	1 cut(s)	217
EcoRII	CCWGG	1 cut(s)	486
FaeI	CATG	3 cut(s)	764, 862, 922
FaiI	YATR	7 cut(s)	438, 461, 599, 762, 860, 920, 980
FaqI	GGGAC	4 cut(s)	115, 153, 203, 388
FatI	CATG	3 cut(s)	760, 858, 918
FauI	CCCGC	3 cut(s)	100, 228, 277
FbaI	TGATCA	1 cut(s)	613
FblI	GTMKAC	1 cut(s)	437
Fnu4HI	GCNGC	4 cut(s)	294, 455, 705, 1005
FokI	GGATG	2 cut(s)	272, 1013
Fsp4HI	GCNGC	4 cut(s)	294, 455, 705, 1005
FspBI	CTAG	1 cut(s)	767
GlaI	GCGC	1 cut(s)	273
GluI	GCNGC	4 cut(s)	294, 455, 705, 1005
GsaI	CCCAGC	2 cut(s)	519, 954
HaeIII	GGCC	1 cut(s)	183
HapII	CCGG	5 cut(s)	73, 214, 224, 233, 247
HhaI	GCGC	1 cut(s)	274
Hin1II	CATG	3 cut(s)	764, 862, 922
Hin6I	GCGC	1 cut(s)	272
HinP1I	GCGC	1 cut(s)	272
HinfI	GANTC	6 cut(s)	23, 59, 317, 470, 529, 641
HpaII	CCGG	5 cut(s)	73, 214, 224, 233, 247
HphI	GGTGA	5 cut(s)	81, 91, 346, 431, 1026
Hpy166II	GTNNAC	1 cut(s)	438
Hpy188I	TCNGA	9 cut(s)	22, 53, 115, 316, 397, 546, 618, 867, 1042
Hpy188III	TCNNGA	4 cut(s)	203, 256, 740, 817
Hpy8I	GTNNAC	1 cut(s)	438
Hpy99I	CGWCG	1 cut(s)	359
HpyAV	CCTTC	6 cut(s)	120, 181, 296, 595, 772, 1047
HpyCH4III	ACNGT	4 cut(s)	506, 542, 849, 897
HpyCH4IV	ACGT	3 cut(s)	357, 434, 483
HpyCH4V	TGCA	4 cut(s)	177, 832, 922, 1007
HpyF3I	CTNAG	3 cut(s)	50, 275, 815
HpySE526I	ACGT	3 cut(s)	357, 434, 483
Hsp92II	CATG	3 cut(s)	764, 862, 922
HspAI	GCGC	1 cut(s)	272
KflI	GGGWCCC	1 cut(s)	217
Ksp22I	TGATCA	1 cut(s)	613
Kzo9I	GATC	8 cut(s)	207, 414, 447, 613, 655, 729, 742, 798
LguI	GCTCTTC	1 cut(s)	561
LmnI	GCTCC	2 cut(s)	37, 205
Lsp1109I	GCAGC	4 cut(s)	280, 466, 691, 991
LweI	GCATC	4 cut(s)	14, 186, 530, 991
MaeI	CTAG	1 cut(s)	767
MaeII	ACGT	3 cut(s)	357, 434, 483
MaeIII	GTNAC	5 cut(s)	64, 430, 530, 897, 974
MalI	GATC	8 cut(s)	209, 416, 449, 615, 657, 731, 744, 800
MboI	GATC	8 cut(s)	207, 414, 447, 613, 655, 729, 742, 798
MboII	GAAGA	8 cut(s)	6, 18, 202, 311, 548, 741, 832, 982
MfeI	CAATTG	1 cut(s)	690
MflI	RGATCY	3 cut(s)	207, 655, 798
MhlI	GDGCHC	3 cut(s)	192, 202, 816
MluCI	AATT	3 cut(s)	690, 853, 935
MlyI	GAGTC	3 cut(s)	17, 53, 538
MseI	TTAA	3 cut(s)	495, 852, 938
MslI	CAYNNNNRTG	2 cut(s)	195, 759
MspA1I	CMGCKG	1 cut(s)	515
MspI	CCGG	5 cut(s)	73, 214, 224, 233, 247
MspR9I	CCNGG	4 cut(s)	215, 233, 248, 488
MunI	CAATTG	1 cut(s)	690
MvaI	CCWGG	1 cut(s)	488
MvnI	CGCG	1 cut(s)	272
NciI	CCSGG	3 cut(s)	215, 233, 248
NdeII	GATC	8 cut(s)	207, 414, 447, 613, 655, 729, 742, 798
NlaIII	CATG	3 cut(s)	764, 862, 922
NlaIV	GGNNCC	4 cut(s)	218, 219, 350, 800
NmuCI	GTSAC	2 cut(s)	64, 530
OliI	CACNNNNGTG	1 cut(s)	195
PciSI	GCTCTTC	1 cut(s)	561
PfeI	GAWTC	3 cut(s)	317, 470, 641
PinAI	ACCGGT	1 cut(s)	72
PkrI	GCNGC	4 cut(s)	295, 456, 706, 1006
PleI	GAGTC	3 cut(s)	17, 53, 537
PpsI	GAGTC	3 cut(s)	17, 53, 537
Ppu21I	YACGTR	1 cut(s)	435
PpuMI	RGGWCCY	1 cut(s)	217
Psp5II	RGGWCCY	1 cut(s)	217
Psp6I	CCWGG	1 cut(s)	486
PspFI	CCCAGC	2 cut(s)	515, 950
PspGI	CCWGG	1 cut(s)	486
PspN4I	GGNNCC	4 cut(s)	218, 219, 350, 800
PspPI	GGNCC	1 cut(s)	217
PspPPI	RGGWCCY	1 cut(s)	217
PsuI	RGATCY	3 cut(s)	207, 655, 798
PvuII	CAGCTG	1 cut(s)	515
RsaI	GTAC	1 cut(s)	696
RsaNI	GTAC	1 cut(s)	695
RseI	CAYNNNNRTG	2 cut(s)	195, 759
SapI	GCTCTTC	1 cut(s)	561
SaqAI	TTAA	3 cut(s)	495, 852, 938
SatI	GCNGC	4 cut(s)	294, 455, 705, 1005
Sau3AI	GATC	8 cut(s)	207, 414, 447, 613, 655, 729, 742, 798
Sau96I	GGNCC	1 cut(s)	217
SchI	GAGTC	3 cut(s)	17, 53, 538
ScrFI	CCNGG	4 cut(s)	215, 233, 248, 488
SduI	GDGCHC	3 cut(s)	192, 202, 816
SfaNI	GCATC	4 cut(s)	14, 186, 530, 991
SinI	GGWCC	1 cut(s)	217
SmiMI	CAYNNNNRTG	2 cut(s)	195, 759
SnaBI	TACGTA	1 cut(s)	435
Sse9I	AATT	3 cut(s)	690, 853, 935
SsiI	CCGC	3 cut(s)	93, 221, 270
SspMI	CTAG	1 cut(s)	767
StyD4I	CCNGG	4 cut(s)	213, 231, 246, 486
TaaI	ACNGT	4 cut(s)	506, 542, 849, 897
TaiI	ACGT	3 cut(s)	360, 437, 486
TasI	AATT	3 cut(s)	690, 853, 935
TfiI	GAWTC	3 cut(s)	317, 470, 641
Tru1I	TTAA	3 cut(s)	495, 852, 938
Tru9I	TTAA	3 cut(s)	495, 852, 938
TseFI	GTSAC	2 cut(s)	64, 530
TseI	GCWGC	4 cut(s)	293, 454, 704, 1004
Tsp45I	GTSAC	2 cut(s)	64, 530
TspDTI	ATGAA	6 cut(s)	6, 368, 614, 673, 847, 907
TspGWI	ACGGA	1 cut(s)	52
VpaK11BI	GGWCC	1 cut(s)	217
XcmI	CCANNNNNNNNNTGG	1 cut(s)	723
XmiI	GTMKAC	1 cut(s)	437
XspI	CTAG	1 cut(s)	767

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.