Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0015115

Physical Location & Seq

Genomic Coordinates Reverse (-)

479606 .. 482225

Gene Structure 2620 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1003100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGGCATCAGATTCAGCAGCTCGAACCCCGCAACTGAGGAAAGACTCAGTGACGAAGCGGTGGGTGATATTCTCACCCGCCAGAGCCAAGCGACCTTCCGACTTCAAATCCAAGTCCCCCATCAACCCCAACTCCGACCAACAACAACAGTGCCCCTTCTGCATCGGCCACGAGCACGAGTGCGCTCCCGAAATCTTCCGGCTCCCGCCCGACAATCCAGACTGGACAATCCGGGTCATCCAGAACCTCTACCCCGCCCTCAGCAGAGACATGGACGTCGTCTCTGCTCAAGACCCGTTACACCAGAACTCCGATTCGGGTCCGGGTCGGGTCGTGATAAGTGGGTTTGGGTTCCACGACGTGGTGATTGAGACCCCTGTTCACTCCGTTCAGCTTTCCGATTTGTCGGCGAGACAGATCGGCGAGATTCTTGTTACGTACACGACGAGGATCCGGCAGCTTATGATCCACGATGTCATCAGATACGTCCAGGTGTTTAAGAACCATGGTGCTTCAGCTGGGGCATCAATGAGCCACTCTCACAGTCAGATAATGGCACTTCCAATTGTTCCAACTGCAGTTGCTGCCCGACTTGACAGTATGAAGGAGTATTTTGATCAGACTGGGAACTGCAGCGTTTGTGAATTCAAATCTTCAAAGGATCTGTTGGTTGATGTTTCAGCCCATTTTGTTTCAATTGTACCGTTTGCTGCTACATTTCCATTTGAGATATGGGTTATTCCTCTCGATCACTCTCCTCATTTCCATGAACTAGACGCTGACAAGGCAGTTGACCTTGGAGGGCTCCTAAAACTCATGCTTAGGAAGATGGCTTTGCAGTTGAACAATCCGCCGTTCAATTTCATGGTTCAGACTTCTCCTCTTCGGGATAGTGCTTCACAGTTATCTCACTCCCATTGGTTTTTGCAGATCGTACCTCAATTAAGTGTTGCGGCAGGGTTTGAAATTGGAACTGGGTGTTACATAAACCCGGTATTCCCCGAAGATGCTGCAAAAGTTTTGAGGGAAGTAAAAGTCTCACCTTCGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005975 GO:0008150 GO:0008152 GO:0008270 GO:0010646 GO:0010647 GO:0016740 GO:0016772 GO:0016779 GO:0017076 GO:0030554 GO:0032101 GO:0032103 GO:0032104 GO:0032106 GO:0032107 GO:0032109 GO:0032553 GO:0032555 GO:0032559 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043531 GO:0044238 GO:0046872 GO:0046914 GO:0047345 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0065007 GO:0070566 GO:0071704 GO:0080040 GO:0080134 GO:0080135 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00052 ko00520 ko01100 ko04917 map00052 map00520 map01100 map04917

Pfam Domains

Protein Families

GalP_UDP_tr_C GalP_UDP_transf

Protein Analysis

351

Amino Acids

38.86

Weight (kDa)

6.42

Isoelectric Point (pI)

45.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GalP_UDP_transf	PF01087	8 - 191	9.4e-15	Galactose-1-phosphate uridyl transferase, N-terminal domain
DUF4921	PF16268	157 - 337	5e-09	Domain of unknown function (DUF4921)
GalP_UDP_tr_C	PF02744	206 - 343	5e-06	Galactose-1-phosphate uridyl transferase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015115)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18200
fragaria_vesca	FvH4_1g28080
malus_domestica	MD12G1003100.v1.1
prunus_persica	Prupe.7G003700_v2.0.a1
pyrus_communis	pycom12g00280
rosa_chinensis	RchiOBHm_Chr3g0497171
rosa_laevigata	RLG00000022474
rosa_multiflora	Rmu_sc0002893.1_g000014 Rmu_sc0007568.1_g000003
rosa_roxburghii	Rroxscaffold_6G00388310
rosa_rugosa	Rorug03G0291500
rosa_samantha	Rh3AG334800 Rh3BG372500 Rh3CG368900 Rh3DG369800
rosa_wichuraiana	Rw3G029430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	275
AatII	GACGTC	1 cut(s)	279
AccB7I	CCANNNNNTGG	1 cut(s)	361
AciI	CCGC	7 cut(s)	29, 58, 78, 206, 255, 851, 953
AclWI	GGATC	4 cut(s)	445, 458, 460, 669
AcoI	YGGCCR	1 cut(s)	166
AcsI	RAATTY	1 cut(s)	644
AcuI	CTGAAG	1 cut(s)	498
AcyI	GRCGYC	1 cut(s)	276
AdeI	CACNNNGTG	1 cut(s)	361
AfaI	GTAC	3 cut(s)	440, 702, 936
AfiI	CCNNNNNNNGG	1 cut(s)	361
AgsI	TTSAA	7 cut(s)	106, 649, 657, 696, 844, 859, 965
AjiI	CACGTC	1 cut(s)	361
AjnI	CCWGG	1 cut(s)	489
AluBI	AGCT	4 cut(s)	20, 394, 460, 518
AluI	AGCT	4 cut(s)	20, 394, 460, 518
Alw21I	GWGCWC	1 cut(s)	177
Alw26I	GTCTC	5 cut(s)	261, 286, 365, 406, 1042
AlwI	GGATC	4 cut(s)	445, 458, 460, 669
AlwNI	CAGNNNCTG	1 cut(s)	584
AoxI	GGCC	1 cut(s)	166
ApeKI	GCWGC	6 cut(s)	17, 457, 584, 633, 710, 1010
ApoI	RAATTY	1 cut(s)	644
AspLEI	GCGC	1 cut(s)	185
AspS9I	GGNCC	1 cut(s)	320
AsuC2I	CCSGG	3 cut(s)	233, 324, 992
AsuHPI	GGTGA	4 cut(s)	66, 76, 376, 1032
AvaII	GGWCC	1 cut(s)	320
BaeGI	GKGCMC	1 cut(s)	155
BamHI	GGATCC	1 cut(s)	450
BanII	GRGCYC	1 cut(s)	807
BauI	CACGAG	2 cut(s)	170, 176
Bbv12I	GWGCWC	1 cut(s)	177
BbvCI	CCTCAGC	1 cut(s)	260
BbvI	GCAGC	6 cut(s)	29, 469, 571, 645, 697, 997
BccI	CCATC	2 cut(s)	128, 823
BceAI	ACGGC	1 cut(s)	838
BcgI	CGANNNNNNTGC	2 cut(s)	992, 1026
BciT130I	CCWGG	1 cut(s)	491
BclI	TGATCA	1 cut(s)	616
BcnI	CCSGG	3 cut(s)	233, 324, 992
BcoDI	GTCTC	5 cut(s)	261, 286, 365, 406, 1042
BfaI	CTAG	1 cut(s)	773
BfmI	CTRYAG	2 cut(s)	576, 631
BisI	GCNGC	7 cut(s)	18, 458, 585, 634, 711, 954, 1011
BlsI	GCNGC	7 cut(s)	19, 459, 586, 635, 712, 955, 1012
Bme1390I	CCNGG	4 cut(s)	233, 324, 491, 992
Bme18I	GGWCC	1 cut(s)	320
BmgBI	CACGTC	1 cut(s)	361
BmgT120I	GGNCC	1 cut(s)	320
BmiI	GGNNCC	5 cut(s)	203, 321, 353, 452, 806
BmrFI	CCNGG	4 cut(s)	233, 324, 491, 992
BmrI	ACTGGG	2 cut(s)	633, 984
BmsI	GCATC	4 cut(s)	14, 171, 533, 997
BmuI	ACTGGG	2 cut(s)	633, 984
BplI	GAGNNNNNCTC	2 cut(s)	523, 555
Bpu10I	CCTNAGC	2 cut(s)	260, 821
BpuEI	CTTGAG	1 cut(s)	273
BpuMI	CCSGG	3 cut(s)	233, 324, 992
BsaAI	YACGTR	1 cut(s)	438
BsaHI	GRCGYC	1 cut(s)	276
BsaI	GGTCTC	1 cut(s)	365
BsaJI	CCNNGG	2 cut(s)	505, 796
BsaXI	ACNNNNNCTCC	4 cut(s)	116, 146, 293, 323
Bsc4I	CCNNNNNNNGG	1 cut(s)	361
Bse1I	ACTGG	3 cut(s)	227, 628, 979
BseBI	CCWGG	1 cut(s)	491
BseDI	CCNNGG	2 cut(s)	505, 796
BseGI	GGATG	1 cut(s)	237
BseLI	CCNNNNNNNGG	1 cut(s)	361
BseMII	CTCAG	3 cut(s)	26, 60, 274
BseNI	ACTGG	3 cut(s)	227, 628, 979
BseRI	GAGGAG	2 cut(s)	747, 870
BseSI	GKGCMC	1 cut(s)	155
BseXI	GCAGC	6 cut(s)	29, 469, 571, 645, 697, 997
BseYI	CCCAGC	1 cut(s)	518
BshFI	GGCC	1 cut(s)	168
BsiHKAI	GWGCWC	1 cut(s)	177
BsiSI	CCGG	5 cut(s)	199, 232, 323, 454, 992
BslFI	GGGAC	1 cut(s)	100
BslI	CCNNNNNNNGG	1 cut(s)	361
BsmAI	GTCTC	5 cut(s)	261, 286, 365, 406, 1042
BsmBI	CGTCTC	1 cut(s)	286
BsmFI	GGGAC	1 cut(s)	100
BsnI	GGCC	1 cut(s)	168
Bso31I	GGTCTC	1 cut(s)	365
Bsp1286I	GDGCHC	3 cut(s)	155, 177, 807
Bsp143I	GATC	7 cut(s)	417, 450, 465, 616, 661, 748, 930
Bsp19I	CCATGG	1 cut(s)	505
BspACI	CCGC	7 cut(s)	29, 58, 78, 206, 255, 851, 953
BspANI	GGCC	1 cut(s)	168
BspCNI	CTCAG	3 cut(s)	27, 59, 273
BspLI	GGNNCC	5 cut(s)	203, 321, 353, 452, 806
BspMAI	CTGCAG	2 cut(s)	580, 635
BspPI	GGATC	4 cut(s)	445, 458, 460, 669
BspTNI	GGTCTC	1 cut(s)	365
BsrI	ACTGG	3 cut(s)	227, 628, 979
BssECI	CCNNGG	2 cut(s)	505, 796
BssMI	GATC	7 cut(s)	417, 450, 465, 616, 661, 748, 930
BssNI	GRCGYC	1 cut(s)	276
BssSI	CACGAG	2 cut(s)	170, 176
BssT1I	CCWWGG	2 cut(s)	505, 796
Bst2BI	CACGAG	2 cut(s)	170, 176
Bst2UI	CCWGG	1 cut(s)	491
Bst4CI	ACNGT	5 cut(s)	150, 545, 599, 705, 903
Bst6I	CTCTTC	1 cut(s)	888
BstACI	GRCGYC	1 cut(s)	276
BstAPI	GCANNNNNTGC	1 cut(s)	584
BstBAI	YACGTR	1 cut(s)	438
BstDEI	CTNAG	4 cut(s)	35, 46, 260, 821
BstDSI	CCRYGG	1 cut(s)	505
BstF5I	GGATG	1 cut(s)	237
BstHHI	GCGC	1 cut(s)	185
BstKTI	GATC	7 cut(s)	420, 453, 468, 619, 664, 751, 933
BstMAI	GTCTC	5 cut(s)	261, 286, 365, 406, 1042
BstMBI	GATC	7 cut(s)	417, 450, 465, 616, 661, 748, 930
BstMWI	GCNNNNNNNGC	3 cut(s)	159, 584, 785
BstNI	CCWGG	1 cut(s)	491
BstSCI	CCNGG	4 cut(s)	231, 322, 489, 990
BstSFI	CTRYAG	2 cut(s)	576, 631
BstSLI	GKGCMC	1 cut(s)	155
BstSNI	TACGTA	1 cut(s)	438
BstV1I	GCAGC	6 cut(s)	29, 469, 571, 645, 697, 997
BstX2I	RGATCY	2 cut(s)	450, 661
BstYI	RGATCY	2 cut(s)	450, 661
BsuRI	GGCC	1 cut(s)	168
BtgI	CCRYGG	1 cut(s)	505
BtrI	CACGTC	1 cut(s)	361
BtsCI	GGATG	1 cut(s)	237
BtsIMutI	CAGTG	2 cut(s)	54, 155
CaiI	CAGNNNCTG	1 cut(s)	584
CfoI	GCGC	1 cut(s)	185
Cfr13I	GGNCC	1 cut(s)	320
CseI	GACGC	1 cut(s)	785
Csp6I	GTAC	3 cut(s)	439, 701, 935
CviAII	CATG	5 cut(s)	271, 506, 767, 817, 865
CviQI	GTAC	3 cut(s)	439, 701, 935
DdeI	CTNAG	4 cut(s)	35, 46, 260, 821
DpnI	GATC	7 cut(s)	419, 452, 467, 618, 663, 750, 932
DpnII	GATC	7 cut(s)	417, 450, 465, 616, 661, 748, 930
DraIII	CACNNNGTG	1 cut(s)	361
DrdI	GACNNNNNNGTC	1 cut(s)	275
DseDI	GACNNNNNNGTC	1 cut(s)	275
EaeI	YGGCCR	1 cut(s)	166
Eam1104I	CTCTTC	1 cut(s)	888
EarI	CTCTTC	1 cut(s)	888
EciI	GGCGGA	1 cut(s)	840
Eco105I	TACGTA	1 cut(s)	438
Eco130I	CCWWGG	2 cut(s)	505, 796
Eco24I	GRGCYC	1 cut(s)	807
Eco31I	GGTCTC	1 cut(s)	365
Eco47I	GGWCC	1 cut(s)	320
Eco57I	CTGAAG	1 cut(s)	498
EcoRI	GAATTC	1 cut(s)	644
EcoRII	CCWGG	1 cut(s)	489
EcoT14I	CCWWGG	2 cut(s)	505, 796
EcoT38I	GRGCYC	1 cut(s)	807
ErhI	CCWWGG	2 cut(s)	505, 796
Esp3I	CGTCTC	1 cut(s)	286
FaeI	CATG	5 cut(s)	274, 509, 770, 820, 868
FaqI	GGGAC	1 cut(s)	100
FatI	CATG	5 cut(s)	270, 505, 766, 816, 864
FauI	CCCGC	4 cut(s)	36, 85, 213, 262
FbaI	TGATCA	1 cut(s)	616
Fnu4HI	GCNGC	7 cut(s)	18, 458, 585, 634, 711, 954, 1011
FokI	GGATG	1 cut(s)	224
FriOI	GRGCYC	1 cut(s)	807
Fsp4HI	GCNGC	7 cut(s)	18, 458, 585, 634, 711, 954, 1011
FspBI	CTAG	1 cut(s)	773
GlaI	GCGC	1 cut(s)	184
GluI	GCNGC	7 cut(s)	18, 458, 585, 634, 711, 954, 1011
GsaI	CCCAGC	1 cut(s)	522
HaeIII	GGCC	1 cut(s)	168
HapII	CCGG	5 cut(s)	199, 232, 323, 454, 992
HgaI	GACGC	1 cut(s)	785
HhaI	GCGC	1 cut(s)	185
Hin1I	GRCGYC	1 cut(s)	276
Hin1II	CATG	5 cut(s)	274, 509, 770, 820, 868
Hin6I	GCGC	1 cut(s)	183
HinP1I	GCGC	1 cut(s)	183
HincII	GTYRAC	1 cut(s)	793
HindII	GTYRAC	1 cut(s)	793
HinfI	GANTC	4 cut(s)	11, 44, 314, 427
HpaII	CCGG	5 cut(s)	199, 232, 323, 454, 992
HphI	GGTGA	4 cut(s)	66, 76, 376, 1032
Hpy166II	GTNNAC	3 cut(s)	382, 441, 793
Hpy188I	TCNGA	9 cut(s)	10, 100, 136, 313, 400, 482, 549, 621, 873
Hpy188III	TCNNGA	7 cut(s)	188, 218, 241, 290, 334, 746, 887
Hpy8I	GTNNAC	3 cut(s)	382, 441, 793
Hpy99I	CGWCG	3 cut(s)	281, 362, 448
HpyAV	CCTTC	4 cut(s)	105, 166, 598, 1053
HpyCH4III	ACNGT	5 cut(s)	150, 545, 599, 705, 903
HpyCH4IV	ACGT	4 cut(s)	276, 360, 437, 486
HpyCH4V	TGCA	6 cut(s)	162, 578, 633, 838, 928, 1013
HpyF10VI	GCNNNNNNNGC	3 cut(s)	159, 584, 785
HpyF3I	CTNAG	4 cut(s)	35, 46, 260, 821
HpySE526I	ACGT	4 cut(s)	276, 360, 437, 486
Hsp92I	GRCGYC	1 cut(s)	276
Hsp92II	CATG	5 cut(s)	274, 509, 770, 820, 868
HspAI	GCGC	1 cut(s)	183
Ksp22I	TGATCA	1 cut(s)	616
Kzo9I	GATC	7 cut(s)	417, 450, 465, 616, 661, 748, 930
LmnI	GCTCC	3 cut(s)	190, 207, 810
Lsp1109I	GCAGC	6 cut(s)	29, 469, 571, 645, 697, 997
LweI	GCATC	4 cut(s)	14, 171, 533, 997
MaeI	CTAG	1 cut(s)	773
MaeII	ACGT	4 cut(s)	276, 360, 437, 486
MaeIII	GTNAC	4 cut(s)	49, 297, 433, 980
MalI	GATC	7 cut(s)	419, 452, 467, 618, 663, 750, 932
MboI	GATC	7 cut(s)	417, 450, 465, 616, 661, 748, 930
MboII	GAAGA	5 cut(s)	187, 645, 838, 875, 1016
MfeI	CAATTG	2 cut(s)	564, 696
MflI	RGATCY	2 cut(s)	450, 661
MhlI	GDGCHC	3 cut(s)	155, 177, 807
MluCI	AATT	6 cut(s)	564, 644, 696, 859, 941, 966
MlyI	GAGTC	1 cut(s)	38
MmeI	TCCRAC	3 cut(s)	123, 159, 596
MseI	TTAA	2 cut(s)	498, 944
MslI	CAYNNNNRTG	1 cut(s)	765
MspA1I	CMGCKG	1 cut(s)	518
MspI	CCGG	5 cut(s)	199, 232, 323, 454, 992
MspR9I	CCNGG	4 cut(s)	233, 324, 491, 992
MunI	CAATTG	2 cut(s)	564, 696
MvaI	CCWGG	1 cut(s)	491
MwoI	GCNNNNNNNGC	3 cut(s)	159, 584, 785
NciI	CCSGG	3 cut(s)	233, 324, 992
NcoI	CCATGG	1 cut(s)	505
NdeII	GATC	7 cut(s)	417, 450, 465, 616, 661, 748, 930
NlaIII	CATG	5 cut(s)	274, 509, 770, 820, 868
NlaIV	GGNNCC	5 cut(s)	203, 321, 353, 452, 806
NmuCI	GTSAC	1 cut(s)	49
PcsI	WCGNNNNNNNCGW	1 cut(s)	443
PfeI	GAWTC	3 cut(s)	11, 314, 427
PflFI	GACNNNGTC	1 cut(s)	278
PflMI	CCANNNNNTGG	1 cut(s)	361
PkrI	GCNGC	7 cut(s)	19, 459, 586, 635, 712, 955, 1012
PleI	GAGTC	1 cut(s)	38
PpsI	GAGTC	1 cut(s)	38
Ppu21I	YACGTR	1 cut(s)	438
Psp6I	CCWGG	1 cut(s)	489
PspFI	CCCAGC	1 cut(s)	518
PspGI	CCWGG	1 cut(s)	489
PspN4I	GGNNCC	5 cut(s)	203, 321, 353, 452, 806
PspPI	GGNCC	1 cut(s)	320
PstI	CTGCAG	2 cut(s)	580, 635
PstNI	CAGNNNCTG	1 cut(s)	584
PsuI	RGATCY	2 cut(s)	450, 661
PsyI	GACNNNGTC	1 cut(s)	278
PvuII	CAGCTG	1 cut(s)	518
RsaI	GTAC	3 cut(s)	440, 702, 936
RsaNI	GTAC	3 cut(s)	439, 701, 935
RseI	CAYNNNNRTG	1 cut(s)	765
SaqAI	TTAA	2 cut(s)	498, 944
SatI	GCNGC	7 cut(s)	18, 458, 585, 634, 711, 954, 1011
Sau3AI	GATC	7 cut(s)	417, 450, 465, 616, 661, 748, 930
Sau96I	GGNCC	1 cut(s)	320
SchI	GAGTC	1 cut(s)	38
ScrFI	CCNGG	4 cut(s)	233, 324, 491, 992
SduI	GDGCHC	3 cut(s)	155, 177, 807
SfaNI	GCATC	4 cut(s)	14, 171, 533, 997
SfcI	CTRYAG	2 cut(s)	576, 631
SinI	GGWCC	1 cut(s)	320
SmiMI	CAYNNNNRTG	1 cut(s)	765
SmlI	CTYRAG	1 cut(s)	288
SmoI	CTYRAG	1 cut(s)	288
SnaBI	TACGTA	1 cut(s)	438
Sse9I	AATT	6 cut(s)	564, 644, 696, 859, 941, 966
SsiI	CCGC	7 cut(s)	29, 58, 78, 206, 255, 851, 953
SspMI	CTAG	1 cut(s)	773
StyD4I	CCNGG	4 cut(s)	231, 322, 489, 990
StyI	CCWWGG	2 cut(s)	505, 796
TaaI	ACNGT	5 cut(s)	150, 545, 599, 705, 903
TaiI	ACGT	4 cut(s)	279, 363, 440, 489
TaqI	TCGA	2 cut(s)	22, 747
TasI	AATT	6 cut(s)	564, 644, 696, 859, 941, 966
TauI	GCSGC	1 cut(s)	956
TfiI	GAWTC	3 cut(s)	11, 314, 427
Tru1I	TTAA	2 cut(s)	498, 944
Tru9I	TTAA	2 cut(s)	498, 944
TscAI	CASTG	2 cut(s)	54, 155
TseFI	GTSAC	1 cut(s)	49
TseI	GCWGC	6 cut(s)	17, 457, 584, 633, 710, 1010
Tsp45I	GTSAC	1 cut(s)	49
TspDTI	ATGAA	3 cut(s)	617, 783, 853
TspGWI	ACGGA	1 cut(s)	376
TspRI	CASTG	2 cut(s)	54, 155
Tth111I	GACNNNGTC	1 cut(s)	278
Van91I	CCANNNNNTGG	1 cut(s)	361
VpaK11BI	GGWCC	1 cut(s)	320
XapI	RAATTY	1 cut(s)	644
XcmI	CCANNNNNNNNNTGG	1 cut(s)	729
XspI	CTAG	1 cut(s)	773
ZraI	GACGTC	1 cut(s)	277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.