Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0015115

Physical Location & Seq

Genomic Coordinates Reverse (-)

19920924 .. 19922773

Gene Structure 1850 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g28080.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGGAAGGCGGCAAGAAGGTCCTCCCAGAAATACGGAGGGACTGGGTGACAAACCGGTGGGTGATATTCTCACCGGCGAGAGCCAAGCGTCCTTCCGACTTCAAATCCAAATCGCCGGTGGGCCATGAGGAGGAACAATCCAACTCTTGTCCCTTCTGTCTCGGCCGCGAGCACCACTGCGCTCCCGAGATCTTCCGGGTCCCGCCCGACGACCCCAACTGGAAACTCCGAGTCATTCAGAACCTCTACCCTGCCCTCAGCCGTGACGTCACTCCTCCTCCTGCCGATGAGACCCCTGGACAGCTCATGACTGGGTTCGGCTTCCACGACGTTGTGATTGAGACCCCTCTCCACTCTCTTCACCTCTCCCATCTCCCCCCTTCTCAGATCGCCCTTGTTCTTGGAGCCTACACCACCCGGATCCTCCACTTCTTGTCAGATCACCCCTCCATCAAATATGTCCAGGTGTTCAAGAACCACGGTGCTTCAGCTGGGGCATCCTTGACTCACTCTCACAGTCAGATCATGGCTCTCCCTTTTGTTCCTCCTGCTGTTGCTGCTCGCCTCCACTCTATGAAAGACTATTTCAATCGCACTGGGAAATGTAGTCTCTGTGAATTCAACTCAAACGACCTTTTGATTCATCAATCACCACATTTTGTTGCAATTGTGCCTTATGCTGCTACTTTTCCTTTTGAGATGTGGATCATTCCTCTCGCTCACTCTCCTCATTTCCATGAACTCAATGCCCATAAGGCAGTTGACCTTGGGGGGATCCTGAAACTCATGCTTGGGAAGATGGCTTTGCAGTTGAATAATCCACCGTTTAATTTCATGATTCAGACTTCTCCTCTTCGGGACAGTGCTTCAGAGTTACCTCACTCGCATTGGTTCTTGCAAATAATACCCCAGTTAAGTGTTGCAGCTGGTTTTGAAATTGGAACTGGCTGTTACATAAATCCAGTCTTCCCAGAGGATGCAGCAAAAGTTTTAAGGGAAGTAAACGTTTTACCTTCAGAAGGAGATGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005975 GO:0008150 GO:0008152 GO:0008270 GO:0010646 GO:0010647 GO:0016740 GO:0016772 GO:0016779 GO:0017076 GO:0030554 GO:0032101 GO:0032103 GO:0032104 GO:0032106 GO:0032107 GO:0032109 GO:0032553 GO:0032555 GO:0032559 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043531 GO:0044238 GO:0046872 GO:0046914 GO:0047345 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0065007 GO:0070566 GO:0071704 GO:0080040 GO:0080134 GO:0080135 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00052 ko00520 ko01100 ko04917 map00052 map00520 map01100 map04917

Pfam Domains

Protein Families

GalP_UDP_tr_C GalP_UDP_transf

Protein Analysis

344

Amino Acids

38.25

Weight (kDa)

6.59

Isoelectric Point (pI)

52.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GalP_UDP_transf	PF01087	9 - 182	5.4e-13	Galactose-1-phosphate uridyl transferase, N-terminal domain
DUF4921	PF16268	145 - 328	3.4e-08	Domain of unknown function (DUF4921)
GalP_UDP_tr_C	PF02744	193 - 333	6.8e-07	Galactose-1-phosphate uridyl transferase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015115)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18200
fragaria_vesca	FvH4_1g28080
malus_domestica	MD12G1003100.v1.1
prunus_persica	Prupe.7G003700_v2.0.a1
pyrus_communis	pycom12g00280
rosa_chinensis	RchiOBHm_Chr3g0497171
rosa_laevigata	RLG00000022474
rosa_multiflora	Rmu_sc0002893.1_g000014 Rmu_sc0007568.1_g000003
rosa_roxburghii	Rroxscaffold_6G00388310
rosa_rugosa	Rorug03G0291500
rosa_samantha	Rh3AG334800 Rh3BG372500 Rh3CG368900 Rh3DG369800
rosa_wichuraiana	Rw3G029430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	270
AccII	CGCG	1 cut(s)	168
AciI	CCGC	3 cut(s)	9, 166, 203
AclI	AACGTT	1 cut(s)	1005
AclWI	GGATC	5 cut(s)	415, 428, 713, 769, 782
AcoI	YGGCCR	1 cut(s)	163
AcsI	RAATTY	1 cut(s)	617
AcuI	CTGAAG	3 cut(s)	471, 852, 999
AcyI	GRCGYC	1 cut(s)	267
AfiI	CCNNNNNNNGG	2 cut(s)	130, 1019
AgeI	ACCGGT	1 cut(s)	54
AgsI	TTSAA	6 cut(s)	103, 472, 589, 622, 814, 935
AjnI	CCWGG	2 cut(s)	295, 462
AluBI	AGCT	3 cut(s)	304, 491, 926
AluI	AGCT	3 cut(s)	304, 491, 926
Alw21I	GWGCWC	1 cut(s)	174
Alw26I	GTCTC	4 cut(s)	164, 284, 335, 614
AlwI	GGATC	5 cut(s)	415, 428, 713, 769, 782
Ama87I	CYCGRG	1 cut(s)	185
AoxI	GGCC	2 cut(s)	121, 163
ApeKI	GCWGC	4 cut(s)	557, 680, 923, 980
ApoI	RAATTY	1 cut(s)	617
AsiGI	ACCGGT	1 cut(s)	54
AspLEI	GCGC	1 cut(s)	182
AspS9I	GGNCC	3 cut(s)	19, 121, 199
AsuC2I	CCSGG	2 cut(s)	197, 418
AsuHPI	GGTGA	6 cut(s)	58, 63, 73, 353, 434, 642
AvaI	CYCGRG	1 cut(s)	185
AvaII	GGWCC	2 cut(s)	19, 199
BamHI	GGATCC	2 cut(s)	420, 774
BbsI	GAAGAC	1 cut(s)	958
Bbv12I	GWGCWC	1 cut(s)	174
BbvCI	CCTCAGC	1 cut(s)	257
BbvI	GCAGC	4 cut(s)	544, 667, 935, 992
BccI	CCATC	3 cut(s)	378, 458, 793
BceAI	ACGGC	1 cut(s)	246
BciT130I	CCWGG	2 cut(s)	297, 464
BcnI	CCSGG	2 cut(s)	197, 418
BcoDI	GTCTC	4 cut(s)	164, 284, 335, 614
BglI	GCCNNNNNGGC	1 cut(s)	755
BglII	AGATCT	1 cut(s)	189
BisI	GCNGC	6 cut(s)	10, 166, 558, 681, 924, 981
BlsI	GCNGC	6 cut(s)	11, 167, 559, 682, 925, 982
Bme1390I	CCNGG	4 cut(s)	197, 297, 418, 464
Bme18I	GGWCC	2 cut(s)	19, 199
BmeT110I	CYCGRG	1 cut(s)	185
BmgT120I	GGNCC	3 cut(s)	19, 121, 199
BmiI	GGNNCC	5 cut(s)	200, 201, 406, 422, 776
BmrFI	CCNGG	4 cut(s)	197, 297, 418, 464
BmrI	ACTGGG	4 cut(s)	52, 321, 606, 904
BmsI	GCATC	2 cut(s)	506, 967
BmuI	ACTGGG	4 cut(s)	52, 321, 606, 904
BpiI	GAAGAC	1 cut(s)	958
Bpu10I	CCTNAGC	1 cut(s)	257
BpuMI	CCSGG	2 cut(s)	197, 418
BsaBI	GATNNNNATC	1 cut(s)	704
BsaHI	GRCGYC	1 cut(s)	267
BsaI	GGTCTC	2 cut(s)	284, 335
BsaJI	CCNNGG	3 cut(s)	295, 478, 766
BsaWI	WCCGGW	1 cut(s)	54
BsaXI	ACNNNNNCTCC	2 cut(s)	262, 292
Bsc4I	CCNNNNNNNGG	2 cut(s)	130, 1019
Bse118I	RCCGGY	3 cut(s)	54, 73, 115
Bse1I	ACTGG	7 cut(s)	47, 224, 316, 601, 910, 949, 962
Bse8I	GATNNNNATC	1 cut(s)	704
BseBI	CCWGG	2 cut(s)	297, 464
BseDI	CCNNGG	3 cut(s)	295, 478, 766
BseGI	GGATG	2 cut(s)	497, 982
BseJI	GATNNNNATC	1 cut(s)	704
BseLI	CCNNNNNNNGG	2 cut(s)	130, 1019
BseMII	CTCAG	2 cut(s)	271, 398
BseNI	ACTGG	7 cut(s)	47, 224, 316, 601, 910, 949, 962
BseRI	GAGGAG	5 cut(s)	143, 264, 267, 717, 840
BseX3I	CGGCCG	1 cut(s)	163
BseXI	GCAGC	4 cut(s)	544, 667, 935, 992
BseYI	CCCAGC	1 cut(s)	491
Bsh1236I	CGCG	1 cut(s)	168
Bsh1285I	CGRYCG	1 cut(s)	166
BshFI	GGCC	2 cut(s)	123, 165
BshTI	ACCGGT	1 cut(s)	54
BsiEI	CGRYCG	1 cut(s)	166
BsiHKAI	GWGCWC	1 cut(s)	174
BsiHKCI	CYCGRG	1 cut(s)	185
BsiSI	CCGG	5 cut(s)	55, 74, 116, 196, 418
BslFI	GGGAC	4 cut(s)	53, 135, 185, 872
BslI	CCNNNNNNNGG	2 cut(s)	130, 1019
BsmAI	GTCTC	4 cut(s)	164, 284, 335, 614
BsmFI	GGGAC	4 cut(s)	53, 135, 185, 872
BsnI	GGCC	2 cut(s)	123, 165
Bso31I	GGTCTC	2 cut(s)	284, 335
BsoBI	CYCGRG	1 cut(s)	185
Bsp1286I	GDGCHC	1 cut(s)	174
Bsp143I	GATC	7 cut(s)	189, 387, 420, 439, 522, 705, 774
BspACI	CCGC	3 cut(s)	9, 166, 203
BspANI	GGCC	2 cut(s)	123, 165
BspCNI	CTCAG	2 cut(s)	270, 397
BspFNI	CGCG	1 cut(s)	168
BspHI	TCATGA	2 cut(s)	306, 834
BspLI	GGNNCC	5 cut(s)	200, 201, 406, 422, 776
BspPI	GGATC	5 cut(s)	415, 428, 713, 769, 782
BspTNI	GGTCTC	2 cut(s)	284, 335
BsrFI	RCCGGY	3 cut(s)	54, 73, 115
BsrI	ACTGG	7 cut(s)	47, 224, 316, 601, 910, 949, 962
BssAI	RCCGGY	3 cut(s)	54, 73, 115
BssECI	CCNNGG	3 cut(s)	295, 478, 766
BssMI	GATC	7 cut(s)	189, 387, 420, 439, 522, 705, 774
BssNI	GRCGYC	1 cut(s)	267
BssT1I	CCWWGG	1 cut(s)	766
Bst2UI	CCWGG	2 cut(s)	297, 464
Bst4CI	ACNGT	4 cut(s)	482, 518, 825, 863
Bst6I	CTCTTC	2 cut(s)	363, 858
BstACI	GRCGYC	1 cut(s)	267
BstC8I	GCNNGC	2 cut(s)	170, 562
BstDEI	CTNAG	2 cut(s)	257, 384
BstDSI	CCRYGG	1 cut(s)	478
BstENI	CCTNNNNNAGG	1 cut(s)	1017
BstF5I	GGATG	2 cut(s)	497, 982
BstFNI	CGCG	1 cut(s)	168
BstHHI	GCGC	1 cut(s)	182
BstKTI	GATC	7 cut(s)	192, 390, 423, 442, 525, 708, 777
BstMAI	GTCTC	4 cut(s)	164, 284, 335, 614
BstMBI	GATC	7 cut(s)	189, 387, 420, 439, 522, 705, 774
BstMCI	CGRYCG	1 cut(s)	166
BstMWI	GCNNNNNNNGC	2 cut(s)	557, 755
BstNI	CCWGG	2 cut(s)	297, 464
BstSCI	CCNGG	4 cut(s)	195, 295, 416, 462
BstUI	CGCG	1 cut(s)	168
BstV1I	GCAGC	4 cut(s)	544, 667, 935, 992
BstV2I	GAAGAC	1 cut(s)	958
BstX2I	RGATCY	3 cut(s)	189, 420, 774
BstYI	RGATCY	3 cut(s)	189, 420, 774
BstZI	CGGCCG	1 cut(s)	163
BsuRI	GGCC	2 cut(s)	123, 165
BtgI	CCRYGG	1 cut(s)	478
BtsCI	GGATG	2 cut(s)	497, 982
BtsI	GCAGTG	1 cut(s)	175
BtsIMutI	CAGTG	3 cut(s)	175, 594, 868
Cac8I	GCNNGC	2 cut(s)	170, 562
CciI	TCATGA	2 cut(s)	306, 834
CfoI	GCGC	1 cut(s)	182
Cfr10I	RCCGGY	3 cut(s)	54, 73, 115
Cfr13I	GGNCC	3 cut(s)	19, 121, 199
CseI	GACGC	1 cut(s)	77
CspAI	ACCGGT	1 cut(s)	54
CviAII	CATG	6 cut(s)	125, 307, 526, 737, 787, 835
DdeI	CTNAG	2 cut(s)	257, 384
DpnI	GATC	7 cut(s)	191, 389, 422, 441, 524, 707, 776
DpnII	GATC	7 cut(s)	189, 387, 420, 439, 522, 705, 774
EaeI	YGGCCR	1 cut(s)	163
EagI	CGGCCG	1 cut(s)	163
Eam1104I	CTCTTC	2 cut(s)	363, 858
EarI	CTCTTC	2 cut(s)	363, 858
EclXI	CGGCCG	1 cut(s)	163
Eco130I	CCWWGG	1 cut(s)	766
Eco31I	GGTCTC	2 cut(s)	284, 335
Eco47I	GGWCC	2 cut(s)	19, 199
Eco52I	CGGCCG	1 cut(s)	163
Eco57I	CTGAAG	3 cut(s)	471, 852, 999
Eco88I	CYCGRG	1 cut(s)	185
EcoNI	CCTNNNNNAGG	1 cut(s)	1017
EcoO109I	RGGNCCY	2 cut(s)	19, 199
EcoRI	GAATTC	1 cut(s)	617
EcoRII	CCWGG	2 cut(s)	295, 462
EcoT14I	CCWWGG	1 cut(s)	766
ErhI	CCWWGG	1 cut(s)	766
FaeI	CATG	6 cut(s)	128, 310, 529, 740, 790, 838
FaqI	GGGAC	4 cut(s)	53, 135, 185, 872
FatI	CATG	6 cut(s)	124, 306, 525, 736, 786, 834
FauI	CCCGC	1 cut(s)	210
Fnu4HI	GCNGC	6 cut(s)	10, 166, 558, 681, 924, 981
FokI	GGATG	2 cut(s)	484, 989
Fsp4HI	GCNGC	6 cut(s)	10, 166, 558, 681, 924, 981
GlaI	GCGC	1 cut(s)	181
GluI	GCNGC	6 cut(s)	10, 166, 558, 681, 924, 981
GsaI	CCCAGC	1 cut(s)	495
HaeIII	GGCC	2 cut(s)	123, 165
HapII	CCGG	5 cut(s)	55, 74, 116, 196, 418
HgaI	GACGC	1 cut(s)	77
HhaI	GCGC	1 cut(s)	182
Hin1I	GRCGYC	1 cut(s)	267
Hin1II	CATG	6 cut(s)	128, 310, 529, 740, 790, 838
Hin6I	GCGC	1 cut(s)	180
HinP1I	GCGC	1 cut(s)	180
HincII	GTYRAC	1 cut(s)	763
HindII	GTYRAC	1 cut(s)	763
HinfI	GANTC	4 cut(s)	231, 505, 640, 838
HpaII	CCGG	5 cut(s)	55, 74, 116, 196, 418
HphI	GGTGA	6 cut(s)	58, 63, 73, 353, 434, 642
Hpy166II	GTNNAC	2 cut(s)	763, 1003
Hpy188I	TCNGA	9 cut(s)	97, 230, 240, 387, 439, 522, 843, 871, 1018
Hpy188III	TCNNGA	6 cut(s)	185, 307, 472, 778, 835, 857
Hpy8I	GTNNAC	2 cut(s)	763, 1003
Hpy99I	CGWCG	2 cut(s)	212, 332
HpyAV	CCTTC	6 cut(s)	10, 102, 163, 390, 1013, 1023
HpyCH4III	ACNGT	4 cut(s)	482, 518, 825, 863
HpyCH4IV	ACGT	3 cut(s)	267, 330, 1005
HpyCH4V	TGCA	5 cut(s)	665, 808, 898, 923, 980
HpyF10VI	GCNNNNNNNGC	2 cut(s)	557, 755
HpyF3I	CTNAG	2 cut(s)	257, 384
HpySE526I	ACGT	3 cut(s)	267, 330, 1005
Hsp92I	GRCGYC	1 cut(s)	267
Hsp92II	CATG	6 cut(s)	128, 310, 529, 740, 790, 838
HspAI	GCGC	1 cut(s)	180
KflI	GGGWCCC	1 cut(s)	199
Kzo9I	GATC	7 cut(s)	189, 387, 420, 439, 522, 705, 774
LmnI	GCTCC	2 cut(s)	187, 404
Lsp1109I	GCAGC	4 cut(s)	544, 667, 935, 992
LweI	GCATC	2 cut(s)	506, 967
MaeII	ACGT	3 cut(s)	267, 330, 1005
MaeIII	GTNAC	5 cut(s)	46, 263, 268, 873, 950
MalI	GATC	7 cut(s)	191, 389, 422, 441, 524, 707, 776
MboI	GATC	7 cut(s)	189, 387, 420, 439, 522, 705, 774
MboII	GAAGA	5 cut(s)	184, 350, 808, 845, 958
MfeI	CAATTG	1 cut(s)	666
MflI	RGATCY	3 cut(s)	189, 420, 774
MhlI	GDGCHC	1 cut(s)	174
MluCI	AATT	4 cut(s)	617, 666, 829, 936
MlyI	GAGTC	2 cut(s)	240, 499
MmeI	TCCRAC	2 cut(s)	120, 165
MseI	TTAA	4 cut(s)	828, 914, 992, 1030
MslI	CAYNNNNRTG	1 cut(s)	735
MspA1I	CMGCKG	2 cut(s)	491, 926
MspI	CCGG	5 cut(s)	55, 74, 116, 196, 418
MspR9I	CCNGG	4 cut(s)	197, 297, 418, 464
MunI	CAATTG	1 cut(s)	666
MvaI	CCWGG	2 cut(s)	297, 464
MvnI	CGCG	1 cut(s)	168
MwoI	GCNNNNNNNGC	2 cut(s)	557, 755
NciI	CCSGG	2 cut(s)	197, 418
NdeII	GATC	7 cut(s)	189, 387, 420, 439, 522, 705, 774
NlaIII	CATG	6 cut(s)	128, 310, 529, 740, 790, 838
NlaIV	GGNNCC	5 cut(s)	200, 201, 406, 422, 776
NmeAIII	GCCGAG	1 cut(s)	141
NmuCI	GTSAC	3 cut(s)	46, 263, 268
PagI	TCATGA	2 cut(s)	306, 834
PcsI	WCGNNNNNNNCGW	1 cut(s)	324
PfeI	GAWTC	2 cut(s)	640, 838
PinAI	ACCGGT	1 cut(s)	54
PkrI	GCNGC	6 cut(s)	11, 167, 559, 682, 925, 982
PleI	GAGTC	2 cut(s)	239, 499
PpsI	GAGTC	2 cut(s)	239, 499
PpuMI	RGGWCCY	2 cut(s)	19, 199
Psp1406I	AACGTT	1 cut(s)	1005
Psp5II	RGGWCCY	2 cut(s)	19, 199
Psp6I	CCWGG	2 cut(s)	295, 462
PspFI	CCCAGC	1 cut(s)	491
PspGI	CCWGG	2 cut(s)	295, 462
PspN4I	GGNNCC	5 cut(s)	200, 201, 406, 422, 776
PspPI	GGNCC	3 cut(s)	19, 121, 199
PspPPI	RGGWCCY	2 cut(s)	19, 199
PsuI	RGATCY	3 cut(s)	189, 420, 774
PvuII	CAGCTG	2 cut(s)	491, 926
RseI	CAYNNNNRTG	1 cut(s)	735
SaqAI	TTAA	4 cut(s)	828, 914, 992, 1030
SatI	GCNGC	6 cut(s)	10, 166, 558, 681, 924, 981
Sau3AI	GATC	7 cut(s)	189, 387, 420, 439, 522, 705, 774
Sau96I	GGNCC	3 cut(s)	19, 121, 199
SchI	GAGTC	2 cut(s)	240, 499
ScrFI	CCNGG	4 cut(s)	197, 297, 418, 464
SduI	GDGCHC	1 cut(s)	174
SfaNI	GCATC	2 cut(s)	506, 967
SgrAI	CRCCGGYG	2 cut(s)	73, 115
SinI	GGWCC	2 cut(s)	19, 199
SmiMI	CAYNNNNRTG	1 cut(s)	735
Sse9I	AATT	4 cut(s)	617, 666, 829, 936
SsiI	CCGC	3 cut(s)	9, 166, 203
StyD4I	CCNGG	4 cut(s)	195, 295, 416, 462
StyI	CCWWGG	1 cut(s)	766
TaaI	ACNGT	4 cut(s)	482, 518, 825, 863
TaiI	ACGT	3 cut(s)	270, 333, 1008
TasI	AATT	4 cut(s)	617, 666, 829, 936
TauI	GCSGC	2 cut(s)	12, 168
TfiI	GAWTC	2 cut(s)	640, 838
Tru1I	TTAA	4 cut(s)	828, 914, 992, 1030
Tru9I	TTAA	4 cut(s)	828, 914, 992, 1030
TscAI	CASTG	3 cut(s)	182, 601, 868
TseFI	GTSAC	3 cut(s)	46, 263, 268
TseI	GCWGC	4 cut(s)	557, 680, 923, 980
Tsp45I	GTSAC	3 cut(s)	46, 263, 268
TspDTI	ATGAA	4 cut(s)	590, 632, 753, 823
TspGWI	ACGGA	1 cut(s)	49
TspRI	CASTG	3 cut(s)	182, 601, 868
VpaK11BI	GGWCC	2 cut(s)	19, 199
XagI	CCTNNNNNAGG	1 cut(s)	1017
XapI	RAATTY	1 cut(s)	617
XcmI	CCANNNNNNNNNTGG	1 cut(s)	115
ZraI	GACGTC	1 cut(s)	268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.