Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0015115

Physical Location & Seq

Genomic Coordinates Reverse (-)

1188131 .. 1190860

Gene Structure 2730 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00388310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGAATAAAGGAAAAATGGGAGACAGGCCCCCAGAAATAAGGAAGGACTGGGTGACAAACCGGTGGGTGATATTCTCACCGGCCAGAGCCAAGCGACCTTCGGACTTCAAATCCAAATCACCGGCGACGCCAACCCAACAACAACAATATCAACAATCTTGTCCCTTTTGTCTCGGCAACGAGCACGACTGCGCTCCCGAAATCTTCCGGGTTCCGCCCGACGACCCCAAATGGAAACTCCGAGTGATCCAGAACCTGTACCCGGCGCTGAGCCGTGCGGAAGTCCCCGTCCCTGTCCCTGCACAGGAGGAGTCCTCCTCCTCCTTGGGTCGGGTCATGACTGGGTTCGGGTTCCACGACGTGGTGATTGAGACCCCGCTTCACACTCTTCAGCTCTCCGATCTTTCCCCAACTCAGATCGCCCATGTTCTTCTCGCCTATACCACCAGGATCCACCACTTCATCCCTAATCATTCCATCAAATACGTCCAGGTGTTCAAAAACCATGGTGCTTCAGCTGGGGCATCAATGAGTCACTCTCACAGTCAGATGATGGCTCTGCCTATTGTTCCTCCTGCTGTTGCTGCTCGACTTGACTCTATGAAGGACTATTTTAATCGGTCTGGCAAATGTAGTATCTGTGAATTCAACTCGAACGATCTTTTAATCCATGCATCACCCCATTTTATTTCAATTGTACCTTATGCTGCTACATTTCCCTTCGAGATATGGATCATTCCTCTCACTCACTCTCCTCATTTCCATGAACTTGATGCGGACAAGTTGAATAATCCACCATTTAATTTCATGATTCAGACTTCTCCTCTTCAGGACAGTGCTTCAGAGTTACCTCACTCCCATTGGTTCTTGCAAATAATACCCCAGTTAAGTGTTCCGGCTGGTTTTGAAATTGGAACTGGCTGTTACATAAATCCAGTCTTCCCAGAGGATGCAGCAAAAGTTTTGAGGGAAGTAAATGTTTTACCTTTGGAAGGAGATGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005975 GO:0008150 GO:0008152 GO:0008270 GO:0010646 GO:0010647 GO:0016740 GO:0016772 GO:0016779 GO:0017076 GO:0030554 GO:0032101 GO:0032103 GO:0032104 GO:0032106 GO:0032107 GO:0032109 GO:0032553 GO:0032555 GO:0032559 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043531 GO:0044238 GO:0046872 GO:0046914 GO:0047345 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0065007 GO:0070566 GO:0071704 GO:0080040 GO:0080134 GO:0080135 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00052 ko00520 ko01100 ko04917 map00052 map00520 map01100 map04917

Pfam Domains

Protein Families

GalP_UDP_tr_C GalP_UDP_transf

Protein Analysis

334

Amino Acids

37.43

Weight (kDa)

6.37

Isoelectric Point (pI)

58.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GalP_UDP_transf	PF01087	12 - 191	2.1e-16	Galactose-1-phosphate uridyl transferase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015115)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18200
fragaria_vesca	FvH4_1g28080
malus_domestica	MD12G1003100.v1.1
prunus_persica	Prupe.7G003700_v2.0.a1
pyrus_communis	pycom12g00280
rosa_chinensis	RchiOBHm_Chr3g0497171
rosa_laevigata	RLG00000022474
rosa_multiflora	Rmu_sc0002893.1_g000014 Rmu_sc0007568.1_g000003
rosa_roxburghii	Rroxscaffold_6G00388310
rosa_rugosa	Rorug03G0291500
rosa_samantha	Rh3AG334800 Rh3BG372500 Rh3CG368900 Rh3DG369800
rosa_wichuraiana	Rw3G029430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	361
AciI	CCGC	4 cut(s)	215, 278, 377, 776
AclWI	GGATC	4 cut(s)	241, 445, 458, 740
AcoI	YGGCCR	1 cut(s)	81
AcsI	RAATTY	1 cut(s)	644
AcuI	CTGAAG	4 cut(s)	374, 498, 812, 825
AcyI	GRCGYC	1 cut(s)	128
AdeI	CACNNNGTG	1 cut(s)	361
AfaI	GTAC	2 cut(s)	260, 699
AfiI	CCNNNNNNNGG	5 cut(s)	262, 304, 330, 361, 992
AgeI	ACCGGT	1 cut(s)	60
AgsI	TTSAA	6 cut(s)	109, 499, 649, 693, 787, 908
AjiI	CACGTC	1 cut(s)	361
AjnI	CCWGG	2 cut(s)	446, 489
AluBI	AGCT	2 cut(s)	394, 518
AluI	AGCT	2 cut(s)	394, 518
Alw21I	GWGCWC	1 cut(s)	186
Alw26I	GTCTC	3 cut(s)	15, 176, 365
AlwI	GGATC	4 cut(s)	241, 445, 458, 740
AlwNI	CAGNNNCTG	1 cut(s)	256
AoxI	GGCC	2 cut(s)	26, 81
ApeKI	GCWGC	3 cut(s)	584, 707, 953
ApoI	RAATTY	1 cut(s)	644
AsiGI	ACCGGT	1 cut(s)	60
AspLEI	GCGC	2 cut(s)	194, 268
AspS9I	GGNCC	1 cut(s)	27
AsuC2I	CCSGG	2 cut(s)	209, 263
AsuHPI	GGTGA	6 cut(s)	64, 69, 79, 111, 376, 669
BamHI	GGATCC	1 cut(s)	450
BbsI	GAAGAC	1 cut(s)	931
Bbv12I	GWGCWC	1 cut(s)	186
BbvI	GCAGC	3 cut(s)	571, 694, 965
BccI	CCATC	2 cut(s)	485, 547
BceAI	ACGGC	1 cut(s)	258
BciT130I	CCWGG	2 cut(s)	448, 491
BcnI	CCSGG	2 cut(s)	209, 263
BcoDI	GTCTC	3 cut(s)	15, 176, 365
BfoI	RGCGCY	1 cut(s)	269
BisI	GCNGC	3 cut(s)	585, 708, 954
BlpI	GCTNAGC	1 cut(s)	269
BlsI	GCNGC	3 cut(s)	586, 709, 955
Bme1390I	CCNGG	4 cut(s)	209, 263, 448, 491
BmgBI	CACGTC	1 cut(s)	361
BmgT120I	GGNCC	1 cut(s)	27
BmiI	GGNNCC	4 cut(s)	29, 213, 353, 452
BmrFI	CCNGG	4 cut(s)	209, 263, 448, 491
BmrI	ACTGGG	3 cut(s)	58, 351, 877
BmsI	GCATC	4 cut(s)	533, 683, 763, 940
BmuI	ACTGGG	3 cut(s)	58, 351, 877
BpiI	GAAGAC	1 cut(s)	931
BplI	GAGNNNNNCTC	6 cut(s)	299, 331, 302, 334, 523, 555
Bpu1102I	GCTNAGC	1 cut(s)	269
BpuMI	CCSGG	2 cut(s)	209, 263
BsaBI	GATNNNNATC	1 cut(s)	731
BsaHI	GRCGYC	1 cut(s)	128
BsaI	GGTCTC	1 cut(s)	365
BsaJI	CCNNGG	2 cut(s)	324, 505
BsaWI	WCCGGW	1 cut(s)	60
BsaXI	ACNNNNNCTCC	2 cut(s)	736, 766
Bsc4I	CCNNNNNNNGG	5 cut(s)	262, 304, 330, 361, 992
Bse118I	RCCGGY	3 cut(s)	60, 79, 121
Bse1I	ACTGG	5 cut(s)	53, 346, 883, 922, 935
Bse8I	GATNNNNATC	1 cut(s)	731
BseBI	CCWGG	2 cut(s)	448, 491
BseDI	CCNNGG	2 cut(s)	324, 505
BseGI	GGATG	2 cut(s)	462, 955
BseJI	GATNNNNATC	1 cut(s)	731
BseLI	CCNNNNNNNGG	5 cut(s)	262, 304, 330, 361, 992
BseMII	CTCAG	2 cut(s)	260, 428
BseNI	ACTGG	5 cut(s)	53, 346, 883, 922, 935
BseRI	GAGGAG	5 cut(s)	307, 310, 323, 744, 813
BseXI	GCAGC	3 cut(s)	571, 694, 965
BseYI	CCCAGC	1 cut(s)	518
BsgI	GTGCAG	1 cut(s)	285
BshFI	GGCC	2 cut(s)	28, 83
BshTI	ACCGGT	1 cut(s)	60
BsiHKAI	GWGCWC	1 cut(s)	186
BsiSI	CCGG	6 cut(s)	61, 80, 122, 208, 263, 896
BslFI	GGGAC	4 cut(s)	147, 269, 275, 281
BslI	CCNNNNNNNGG	5 cut(s)	262, 304, 330, 361, 992
BsmAI	GTCTC	3 cut(s)	15, 176, 365
BsmFI	GGGAC	4 cut(s)	147, 269, 275, 281
BsnI	GGCC	2 cut(s)	28, 83
Bso31I	GGTCTC	1 cut(s)	365
Bsp1286I	GDGCHC	1 cut(s)	186
Bsp143I	GATC	6 cut(s)	246, 400, 417, 450, 658, 732
Bsp1720I	GCTNAGC	1 cut(s)	269
Bsp19I	CCATGG	1 cut(s)	505
BspACI	CCGC	4 cut(s)	215, 278, 377, 776
BspANI	GGCC	2 cut(s)	28, 83
BspCNI	CTCAG	2 cut(s)	261, 427
BspHI	TCATGA	2 cut(s)	336, 807
BspLI	GGNNCC	4 cut(s)	29, 213, 353, 452
BspPI	GGATC	4 cut(s)	241, 445, 458, 740
BspTNI	GGTCTC	1 cut(s)	365
BsrFI	RCCGGY	3 cut(s)	60, 79, 121
BsrI	ACTGG	5 cut(s)	53, 346, 883, 922, 935
BssAI	RCCGGY	3 cut(s)	60, 79, 121
BssECI	CCNNGG	2 cut(s)	324, 505
BssMI	GATC	6 cut(s)	246, 400, 417, 450, 658, 732
BssNI	GRCGYC	1 cut(s)	128
BssT1I	CCWWGG	2 cut(s)	324, 505
Bst2UI	CCWGG	2 cut(s)	448, 491
Bst4CI	ACNGT	2 cut(s)	545, 836
Bst6I	CTCTTC	2 cut(s)	393, 831
BstACI	GRCGYC	1 cut(s)	128
BstDEI	CTNAG	2 cut(s)	269, 414
BstDSI	CCRYGG	1 cut(s)	505
BstENI	CCTNNNNNAGG	1 cut(s)	990
BstF5I	GGATG	2 cut(s)	462, 955
BstH2I	RGCGCY	1 cut(s)	269
BstHHI	GCGC	2 cut(s)	194, 268
BstKTI	GATC	6 cut(s)	249, 403, 420, 453, 661, 735
BstMAI	GTCTC	3 cut(s)	15, 176, 365
BstMBI	GATC	6 cut(s)	246, 400, 417, 450, 658, 732
BstMWI	GCNNNNNNNGC	1 cut(s)	584
BstNI	CCWGG	2 cut(s)	448, 491
BstSCI	CCNGG	4 cut(s)	207, 261, 446, 489
BstV1I	GCAGC	3 cut(s)	571, 694, 965
BstV2I	GAAGAC	1 cut(s)	931
BstX2I	RGATCY	1 cut(s)	450
BstYI	RGATCY	1 cut(s)	450
BsuRI	GGCC	2 cut(s)	28, 83
BtgI	CCRYGG	1 cut(s)	505
BtrI	CACGTC	1 cut(s)	361
BtsCI	GGATG	2 cut(s)	462, 955
BtsIMutI	CAGTG	1 cut(s)	841
CaiI	CAGNNNCTG	1 cut(s)	256
CciI	TCATGA	2 cut(s)	336, 807
CfoI	GCGC	2 cut(s)	194, 268
Cfr10I	RCCGGY	3 cut(s)	60, 79, 121
Cfr13I	GGNCC	1 cut(s)	27
CseI	GACGC	1 cut(s)	136
Csp6I	GTAC	2 cut(s)	259, 698
CspAI	ACCGGT	1 cut(s)	60
CviAII	CATG	6 cut(s)	337, 425, 506, 671, 764, 808
CviJI	RGCY	9 cut(s)	28, 83, 89, 273, 394, 518, 557, 899, 921
CviKI_1	RGCY	9 cut(s)	28, 83, 89, 273, 394, 518, 557, 899, 921
CviQI	GTAC	2 cut(s)	259, 698
DdeI	CTNAG	2 cut(s)	269, 414
DpnI	GATC	6 cut(s)	248, 402, 419, 452, 660, 734
DpnII	GATC	6 cut(s)	246, 400, 417, 450, 658, 732
DraIII	CACNNNGTG	1 cut(s)	361
EaeI	YGGCCR	1 cut(s)	81
Eam1104I	CTCTTC	2 cut(s)	393, 831
EarI	CTCTTC	2 cut(s)	393, 831
EciI	GGCGGA	1 cut(s)	204
Eco130I	CCWWGG	2 cut(s)	324, 505
Eco31I	GGTCTC	1 cut(s)	365
Eco57I	CTGAAG	4 cut(s)	374, 498, 812, 825
EcoNI	CCTNNNNNAGG	1 cut(s)	990
EcoO109I	RGGNCCY	1 cut(s)	27
EcoRI	GAATTC	1 cut(s)	644
EcoRII	CCWGG	2 cut(s)	446, 489
EcoT14I	CCWWGG	2 cut(s)	324, 505
EcoT22I	ATGCAT	1 cut(s)	676
ErhI	CCWWGG	2 cut(s)	324, 505
FaeI	CATG	6 cut(s)	340, 428, 509, 674, 767, 811
FaqI	GGGAC	4 cut(s)	147, 269, 275, 281
FatI	CATG	6 cut(s)	336, 424, 505, 670, 763, 807
FauI	CCCGC	1 cut(s)	384
Fnu4HI	GCNGC	3 cut(s)	585, 708, 954
FokI	GGATG	2 cut(s)	449, 962
Fsp4HI	GCNGC	3 cut(s)	585, 708, 954
GlaI	GCGC	2 cut(s)	193, 267
GluI	GCNGC	3 cut(s)	585, 708, 954
GsaI	CCCAGC	1 cut(s)	522
HaeII	RGCGCY	1 cut(s)	269
HaeIII	GGCC	2 cut(s)	28, 83
HapII	CCGG	6 cut(s)	61, 80, 122, 208, 263, 896
HgaI	GACGC	1 cut(s)	136
HhaI	GCGC	2 cut(s)	194, 268
Hin1I	GRCGYC	1 cut(s)	128
Hin1II	CATG	6 cut(s)	340, 428, 509, 674, 767, 811
Hin6I	GCGC	2 cut(s)	192, 266
HinP1I	GCGC	2 cut(s)	192, 266
HinfI	GANTC	4 cut(s)	311, 532, 596, 811
HpaII	CCGG	6 cut(s)	61, 80, 122, 208, 263, 896
HphI	GGTGA	6 cut(s)	64, 69, 79, 111, 376, 669
Hpy188I	TCNGA	7 cut(s)	103, 242, 400, 417, 549, 816, 844
Hpy188III	TCNNGA	6 cut(s)	197, 250, 337, 724, 808, 830
Hpy99I	CGWCG	3 cut(s)	130, 224, 362
HpyAV	CCTTC	5 cut(s)	37, 108, 598, 730, 986
HpyCH4III	ACNGT	2 cut(s)	545, 836
HpyCH4IV	ACGT	2 cut(s)	360, 486
HpyCH4V	TGCA	4 cut(s)	302, 674, 871, 953
HpyF10VI	GCNNNNNNNGC	1 cut(s)	584
HpyF3I	CTNAG	2 cut(s)	269, 414
HpySE526I	ACGT	2 cut(s)	360, 486
Hsp92I	GRCGYC	1 cut(s)	128
Hsp92II	CATG	6 cut(s)	340, 428, 509, 674, 767, 811
HspAI	GCGC	2 cut(s)	192, 266
Kzo9I	GATC	6 cut(s)	246, 400, 417, 450, 658, 732
LmnI	GCTCC	1 cut(s)	199
Lsp1109I	GCAGC	3 cut(s)	571, 694, 965
LweI	GCATC	4 cut(s)	533, 683, 763, 940
MaeII	ACGT	2 cut(s)	360, 486
MaeIII	GTNAC	4 cut(s)	52, 533, 846, 923
MalI	GATC	6 cut(s)	248, 402, 419, 452, 660, 734
MboI	GATC	6 cut(s)	246, 400, 417, 450, 658, 732
MboII	GAAGA	5 cut(s)	196, 380, 422, 818, 931
MfeI	CAATTG	1 cut(s)	693
MflI	RGATCY	1 cut(s)	450
MhlI	GDGCHC	1 cut(s)	186
MluCI	AATT	4 cut(s)	644, 693, 802, 909
MlyI	GAGTC	3 cut(s)	320, 541, 590
Mph1103I	ATGCAT	1 cut(s)	676
MseI	TTAA	5 cut(s)	615, 665, 801, 887, 1003
MslI	CAYNNNNRTG	1 cut(s)	762
MspA1I	CMGCKG	1 cut(s)	518
MspI	CCGG	6 cut(s)	61, 80, 122, 208, 263, 896
MspR9I	CCNGG	4 cut(s)	209, 263, 448, 491
MunI	CAATTG	1 cut(s)	693
MvaI	CCWGG	2 cut(s)	448, 491
MwoI	GCNNNNNNNGC	1 cut(s)	584
NciI	CCSGG	2 cut(s)	209, 263
NcoI	CCATGG	1 cut(s)	505
NdeII	GATC	6 cut(s)	246, 400, 417, 450, 658, 732
NlaIII	CATG	6 cut(s)	340, 428, 509, 674, 767, 811
NlaIV	GGNNCC	4 cut(s)	29, 213, 353, 452
NmeAIII	GCCGAG	1 cut(s)	153
NmuCI	GTSAC	2 cut(s)	52, 533
NsiI	ATGCAT	1 cut(s)	676
PagI	TCATGA	2 cut(s)	336, 807
PcsI	WCGNNNNNNNCGW	1 cut(s)	354
PfeI	GAWTC	1 cut(s)	811
PflMI	CCANNNNNTGG	1 cut(s)	361
PinAI	ACCGGT	1 cut(s)	60
PkrI	GCNGC	3 cut(s)	586, 709, 955
PleI	GAGTC	3 cut(s)	319, 540, 590
PpsI	GAGTC	3 cut(s)	319, 540, 590
Psp6I	CCWGG	2 cut(s)	446, 489
PspFI	CCCAGC	1 cut(s)	518
PspGI	CCWGG	2 cut(s)	446, 489
PspN4I	GGNNCC	4 cut(s)	29, 213, 353, 452
PspPI	GGNCC	1 cut(s)	27
PstNI	CAGNNNCTG	1 cut(s)	256
PsuI	RGATCY	1 cut(s)	450
PvuII	CAGCTG	1 cut(s)	518
RsaI	GTAC	2 cut(s)	260, 699
RsaNI	GTAC	2 cut(s)	259, 698
RseI	CAYNNNNRTG	1 cut(s)	762
SaqAI	TTAA	5 cut(s)	615, 665, 801, 887, 1003
SatI	GCNGC	3 cut(s)	585, 708, 954
Sau3AI	GATC	6 cut(s)	246, 400, 417, 450, 658, 732
Sau96I	GGNCC	1 cut(s)	27
SchI	GAGTC	3 cut(s)	320, 541, 590
ScrFI	CCNGG	4 cut(s)	209, 263, 448, 491
SduI	GDGCHC	1 cut(s)	186
SfaNI	GCATC	4 cut(s)	533, 683, 763, 940
SgrAI	CRCCGGYG	1 cut(s)	121
SmiMI	CAYNNNNRTG	1 cut(s)	762
Sse9I	AATT	4 cut(s)	644, 693, 802, 909
SsiI	CCGC	4 cut(s)	215, 278, 377, 776
StyD4I	CCNGG	4 cut(s)	207, 261, 446, 489
StyI	CCWWGG	2 cut(s)	324, 505
TaaI	ACNGT	2 cut(s)	545, 836
TaiI	ACGT	2 cut(s)	363, 489
TaqI	TCGA	3 cut(s)	589, 653, 723
TaqII	GACCGA	1 cut(s)	609
TasI	AATT	4 cut(s)	644, 693, 802, 909
TfiI	GAWTC	1 cut(s)	811
Tru1I	TTAA	5 cut(s)	615, 665, 801, 887, 1003
Tru9I	TTAA	5 cut(s)	615, 665, 801, 887, 1003
TscAI	CASTG	1 cut(s)	841
TseFI	GTSAC	2 cut(s)	52, 533
TseI	GCWGC	3 cut(s)	584, 707, 953
Tsp45I	GTSAC	2 cut(s)	52, 533
TspDTI	ATGAA	5 cut(s)	17, 451, 617, 780, 796
TspRI	CASTG	1 cut(s)	841
Van91I	CCANNNNNTGG	1 cut(s)	361
XagI	CCTNNNNNAGG	1 cut(s)	990
XapI	RAATTY	1 cut(s)	644
Zsp2I	ATGCAT	1 cut(s)	676

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.