Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0015115

Physical Location & Seq

Genomic Coordinates Reverse (-)

332542 .. 333742

Gene Structure 1201 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g00280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGAGCCACTCGCACAGTCAGTTAATGGCACTTCCAATTGTTCCAACTGCAGTTGCTGCCCGACTTGACAGTATGAAGGAGTATTTTGATCAGACTGGGAACTGCAGCGTTTGTGAATTCAAATCTTCAAAGGATCTGTTGGTTGATGTTTCAGCCCATTTTGTTTCAATTGTACCGTTTGCTGCTACATTTCCATTTGAGATATGGGTTATTCCTCTCGATCACTCTCCTCATTTCCATGAACTAGACGCTGACAAGGCAGTTGACCTTGGAGGGCTCCTAAAACTCATGCTTAGGAAGATGTCTTTGCAGTTGAACAATCCGCCGTTCAATTTCATGGTTCAGACTTCTCCTCTTCGGGATAGTGCTTCACAGTTATCTCACTCCCATTGGTTCTTGCAGATCGTACCTCAATTAGGAGTTGCAGCAGGGTTTGAAATTGGAACTGGGTGTTACATAAACCCAGTATTCCCGGAAGATGCTGCAAAAGTTTTGAGGGAAGTAAAAGTCTCACCTTCGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005975 GO:0008150 GO:0008152 GO:0008270 GO:0010646 GO:0010647 GO:0016740 GO:0016772 GO:0016779 GO:0017076 GO:0030554 GO:0032101 GO:0032103 GO:0032104 GO:0032106 GO:0032107 GO:0032109 GO:0032553 GO:0032555 GO:0032559 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043531 GO:0044238 GO:0046872 GO:0046914 GO:0047345 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0065007 GO:0070566 GO:0071704 GO:0080040 GO:0080134 GO:0080135 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00052 ko00520 ko01100 ko04917 map00052 map00520 map01100 map04917

Pfam Domains

Protein Families

GalP_UDP_tr_C GalP_UDP_transf

Protein Analysis

175

Amino Acids

19.21

Weight (kDa)

5.84

Isoelectric Point (pI)

45.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GalP_UDP_tr_C	PF02744	42 - 166	1.6e-06	Galactose-1-phosphate uridyl transferase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0015115)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18200
fragaria_vesca	FvH4_1g28080
malus_domestica	MD12G1003100.v1.1
prunus_persica	Prupe.7G003700_v2.0.a1
pyrus_communis	pycom12g00280
rosa_chinensis	RchiOBHm_Chr3g0497171
rosa_laevigata	RLG00000022474
rosa_multiflora	Rmu_sc0002893.1_g000014 Rmu_sc0007568.1_g000003
rosa_roxburghii	Rroxscaffold_6G00388310
rosa_rugosa	Rorug03G0291500
rosa_samantha	Rh3AG334800 Rh3BG372500 Rh3CG368900 Rh3DG369800
rosa_wichuraiana	Rw3G029430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	323
AclWI	GGATC	1 cut(s)	141
AcsI	RAATTY	1 cut(s)	116
AfaI	GTAC	2 cut(s)	174, 408
AfiI	CCNNNNNNNGG	1 cut(s)	416
AgsI	TTSAA	6 cut(s)	121, 129, 168, 316, 331, 437
Alw26I	GTCTC	1 cut(s)	514
AlwI	GGATC	1 cut(s)	141
AlwNI	CAGNNNCTG	1 cut(s)	56
ApeKI	GCWGC	5 cut(s)	56, 105, 182, 425, 482
ApoI	RAATTY	1 cut(s)	116
AsuC2I	CCSGG	1 cut(s)	473
AsuHPI	GGTGA	1 cut(s)	504
BanII	GRGCYC	1 cut(s)	279
BbvI	GCAGC	5 cut(s)	43, 117, 169, 437, 469
BceAI	ACGGC	1 cut(s)	310
BclI	TGATCA	1 cut(s)	88
BcnI	CCSGG	1 cut(s)	473
BcoDI	GTCTC	1 cut(s)	514
BfaI	CTAG	1 cut(s)	245
BfmI	CTRYAG	2 cut(s)	48, 103
BisI	GCNGC	5 cut(s)	57, 106, 183, 426, 483
BlsI	GCNGC	5 cut(s)	58, 107, 184, 427, 484
Bme1390I	CCNGG	1 cut(s)	473
BmiI	GGNNCC	1 cut(s)	278
BmrFI	CCNGG	1 cut(s)	473
BmrI	ACTGGG	3 cut(s)	105, 456, 458
BmsI	GCATC	1 cut(s)	469
BmuI	ACTGGG	3 cut(s)	105, 456, 458
Bpu10I	CCTNAGC	1 cut(s)	293
BpuMI	CCSGG	1 cut(s)	473
BsaJI	CCNNGG	1 cut(s)	268
Bsc4I	CCNNNNNNNGG	1 cut(s)	416
Bse1I	ACTGG	3 cut(s)	100, 451, 464
BseDI	CCNNGG	1 cut(s)	268
BseLI	CCNNNNNNNGG	1 cut(s)	416
BseNI	ACTGG	3 cut(s)	100, 451, 464
BseRI	GAGGAG	2 cut(s)	219, 342
BseXI	GCAGC	5 cut(s)	43, 117, 169, 437, 469
BsiSI	CCGG	1 cut(s)	473
BslI	CCNNNNNNNGG	1 cut(s)	416
BsmAI	GTCTC	1 cut(s)	514
Bsp1286I	GDGCHC	1 cut(s)	279
Bsp143I	GATC	4 cut(s)	88, 133, 220, 402
BspACI	CCGC	1 cut(s)	323
BspLI	GGNNCC	1 cut(s)	278
BspMAI	CTGCAG	2 cut(s)	52, 107
BspPI	GGATC	1 cut(s)	141
BsrI	ACTGG	3 cut(s)	100, 451, 464
BssECI	CCNNGG	1 cut(s)	268
BssMI	GATC	4 cut(s)	88, 133, 220, 402
BssT1I	CCWWGG	1 cut(s)	268
Bst4CI	ACNGT	4 cut(s)	17, 71, 177, 375
Bst6I	CTCTTC	1 cut(s)	360
BstAPI	GCANNNNNTGC	1 cut(s)	56
BstDEI	CTNAG	1 cut(s)	293
BstENI	CCTNNNNNAGG	1 cut(s)	414
BstKTI	GATC	4 cut(s)	91, 136, 223, 405
BstMAI	GTCTC	1 cut(s)	514
BstMBI	GATC	4 cut(s)	88, 133, 220, 402
BstMWI	GCNNNNNNNGC	2 cut(s)	56, 257
BstSCI	CCNGG	1 cut(s)	471
BstSFI	CTRYAG	2 cut(s)	48, 103
BstV1I	GCAGC	5 cut(s)	43, 117, 169, 437, 469
BstX2I	RGATCY	1 cut(s)	133
BstYI	RGATCY	1 cut(s)	133
CaiI	CAGNNNCTG	1 cut(s)	56
CseI	GACGC	1 cut(s)	257
Csp6I	GTAC	2 cut(s)	173, 407
CviAII	CATG	3 cut(s)	239, 289, 337
CviJI	RGCY	3 cut(s)	6, 155, 277
CviKI_1	RGCY	3 cut(s)	6, 155, 277
CviQI	GTAC	2 cut(s)	173, 407
DdeI	CTNAG	1 cut(s)	293
DpnI	GATC	4 cut(s)	90, 135, 222, 404
DpnII	GATC	4 cut(s)	88, 133, 220, 402
Eam1104I	CTCTTC	1 cut(s)	360
EarI	CTCTTC	1 cut(s)	360
EciI	GGCGGA	1 cut(s)	312
Eco130I	CCWWGG	1 cut(s)	268
Eco24I	GRGCYC	1 cut(s)	279
EcoNI	CCTNNNNNAGG	1 cut(s)	414
EcoRI	GAATTC	1 cut(s)	116
EcoT14I	CCWWGG	1 cut(s)	268
EcoT38I	GRGCYC	1 cut(s)	279
ErhI	CCWWGG	1 cut(s)	268
FaeI	CATG	3 cut(s)	242, 292, 340
FaiI	YATR	7 cut(s)	74, 205, 240, 290, 338, 458, 523
FatI	CATG	3 cut(s)	238, 288, 336
FbaI	TGATCA	1 cut(s)	88
Fnu4HI	GCNGC	5 cut(s)	57, 106, 183, 426, 483
FriOI	GRGCYC	1 cut(s)	279
Fsp4HI	GCNGC	5 cut(s)	57, 106, 183, 426, 483
FspBI	CTAG	1 cut(s)	245
GluI	GCNGC	5 cut(s)	57, 106, 183, 426, 483
HapII	CCGG	1 cut(s)	473
HgaI	GACGC	1 cut(s)	257
Hin1II	CATG	3 cut(s)	242, 292, 340
HincII	GTYRAC	1 cut(s)	265
HindII	GTYRAC	1 cut(s)	265
HpaII	CCGG	1 cut(s)	473
HphI	GGTGA	1 cut(s)	504
Hpy166II	GTNNAC	1 cut(s)	265
Hpy188I	TCNGA	2 cut(s)	93, 345
Hpy188III	TCNNGA	2 cut(s)	218, 359
Hpy8I	GTNNAC	1 cut(s)	265
HpyAV	CCTTC	2 cut(s)	70, 525
HpyCH4III	ACNGT	4 cut(s)	17, 71, 177, 375
HpyCH4V	TGCA	6 cut(s)	50, 105, 310, 400, 425, 485
HpyF10VI	GCNNNNNNNGC	2 cut(s)	56, 257
HpyF3I	CTNAG	1 cut(s)	293
Hsp92II	CATG	3 cut(s)	242, 292, 340
Ksp22I	TGATCA	1 cut(s)	88
Kzo9I	GATC	4 cut(s)	88, 133, 220, 402
LmnI	GCTCC	1 cut(s)	282
LpnPI	CCDG	5 cut(s)	81, 414, 432, 477, 486
Lsp1109I	GCAGC	5 cut(s)	43, 117, 169, 437, 469
LweI	GCATC	1 cut(s)	469
MaeI	CTAG	1 cut(s)	245
MaeIII	GTNAC	1 cut(s)	452
MalI	GATC	4 cut(s)	90, 135, 222, 404
MboI	GATC	4 cut(s)	88, 133, 220, 402
MboII	GAAGA	4 cut(s)	117, 310, 347, 488
MfeI	CAATTG	2 cut(s)	36, 168
MflI	RGATCY	1 cut(s)	133
MhlI	GDGCHC	1 cut(s)	279
MluCI	AATT	6 cut(s)	36, 116, 168, 331, 413, 438
MmeI	TCCRAC	1 cut(s)	68
MnlI	CCTC	6 cut(s)	225, 240, 266, 363, 420, 489
MseI	TTAA	1 cut(s)	23
MslI	CAYNNNNRTG	1 cut(s)	237
MspI	CCGG	1 cut(s)	473
MspR9I	CCNGG	1 cut(s)	473
MunI	CAATTG	2 cut(s)	36, 168
MwoI	GCNNNNNNNGC	2 cut(s)	56, 257
NciI	CCSGG	1 cut(s)	473
NdeII	GATC	4 cut(s)	88, 133, 220, 402
NlaIII	CATG	3 cut(s)	242, 292, 340
NlaIV	GGNNCC	1 cut(s)	278
PfoI	TCCNGGA	1 cut(s)	471
PkrI	GCNGC	5 cut(s)	58, 107, 184, 427, 484
PspN4I	GGNNCC	1 cut(s)	278
PstI	CTGCAG	2 cut(s)	52, 107
PstNI	CAGNNNCTG	1 cut(s)	56
PsuI	RGATCY	1 cut(s)	133
RsaI	GTAC	2 cut(s)	174, 408
RsaNI	GTAC	2 cut(s)	173, 407
RseI	CAYNNNNRTG	1 cut(s)	237
SaqAI	TTAA	1 cut(s)	23
SatI	GCNGC	5 cut(s)	57, 106, 183, 426, 483
Sau3AI	GATC	4 cut(s)	88, 133, 220, 402
ScrFI	CCNGG	1 cut(s)	473
SduI	GDGCHC	1 cut(s)	279
SetI	ASST	3 cut(s)	270, 412, 517
SfaNI	GCATC	1 cut(s)	469
SfcI	CTRYAG	2 cut(s)	48, 103
SmiMI	CAYNNNNRTG	1 cut(s)	237
Sse9I	AATT	6 cut(s)	36, 116, 168, 331, 413, 438
SsiI	CCGC	1 cut(s)	323
SspMI	CTAG	1 cut(s)	245
StyD4I	CCNGG	1 cut(s)	471
StyI	CCWWGG	1 cut(s)	268
TaaI	ACNGT	4 cut(s)	17, 71, 177, 375
TaqI	TCGA	1 cut(s)	219
TasI	AATT	6 cut(s)	36, 116, 168, 331, 413, 438
Tru1I	TTAA	1 cut(s)	23
Tru9I	TTAA	1 cut(s)	23
TseI	GCWGC	5 cut(s)	56, 105, 182, 425, 482
TspDTI	ATGAA	3 cut(s)	89, 255, 325
XagI	CCTNNNNNAGG	1 cut(s)	414
XapI	RAATTY	1 cut(s)	116
XcmI	CCANNNNNNNNNTGG	1 cut(s)	201
XspI	CTAG	1 cut(s)	245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.