RLG00000022474

galactose-1-phosphate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0015115
Physical Location & Seq
Reverse (-)
1173108 .. 1174848
1741 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022474

Sequence Viewer

Length: 1044 bp
ATGGGGCCTGCCCCAGAAATAAGGAAGGACTGGGTGACAAACCGGTGGGTGATATTCTCGCCGGCCAGAGCCAAGCGACCTTCGGACTTCAAATCCAAATCACCGGCGACGCCAACCCAACAACAATATCAACAATCTTGTCCCTTTTGTCTCGGCAACGAGCACGACTGCGCTCCCGAAATCTTCCGGGTTCCGCCCGACGACCCCAAATGGAAACTCCGAGTGATCCAGAACCTGTACCCGGCGCTGAGCCGTGCGGATGTCCCCGTCCCTGTCCCTGTCCCTGCGCAGGAGGAGTCCTCCTCCTCTTTGGGTCAGGTCATGACTGGGTTCGGGTTCCACGACGTGGTGATTGAGACCCCGCTTCACTCTCTTCAGCTCTCCGATCTTTCCCCAACTCAGATAGCCCATGTTCTTCTGGCCTATACCACCAGGATCCACCACTTCATCGCTAATCATTCCATCAAATACGTCCAGGTGTTCAAAAACCATGGTGCTTCAGCTGGGGCATCAATGAGTCACTCTCACAGTCAGATGATGGCTCTGCCTATTGTTCCTCCTGCTGTTGCTGCTCGACTTGACTCTATGAAGGACTATTTTGATCGGACTGGCAAATGTAGTATCTGTGAATTCAACTCGAACGATCTTTTGATCCATGCATCACCCCATTTTATTTCAATTGTACCTTATGCTGCTACATTTCCCTTCGAGATGTGGATCATTCCTCTCACTCACTCTCCTCATTTCCATGAACTTGATGCTGACAAGGCAGTTGACCTTGGGGGGATCCTGAAACTCATGCTTCGGAAGATGGCTTTGCAGTTGAATAATCCACCATTTAATTTCATGATTCAGACTTCTCCTCTTCAGGACAGTGCTTCAGAGTTACCTCACTCCCATTGGTTCTTGCAAATAATACCCCAGTTAAGTGTTGCAGCTGGTTTTGAAATTGGAACTGGCTGTTACATAAATCCAGTCTTCCCAGAGGATGCAGCAAAAATTTTGAGGGAAGTAAATGTTTTACCTTTGGAAGGAGATGATTAA

Protein Analysis

348

Amino Acids

38.63

Weight (kDa)

6.17

Isoelectric Point (pI)

55.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GalP_UDP_transf PF01087 7 - 186 1.1e-16 Galactose-1-phosphate uridyl transferase, N-terminal domain
DUF4921 PF16268 147 - 331 3.9e-08 Domain of unknown function (DUF4921)
GalP_UDP_tr_C PF02744 169 - 311 2.1e-06 Galactose-1-phosphate uridyl transferase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015115)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G18200
fragaria_vesca FvH4_1g28080
malus_domestica MD12G1003100.v1.1
prunus_persica Prupe.7G003700_v2.0.a1
pyrus_communis pycom12g00280
rosa_chinensis RchiOBHm_Chr3g0497171
rosa_laevigata RLG00000022474
rosa_multiflora Rmu_sc0002893.1_g000014 Rmu_sc0007568.1_g000003
rosa_roxburghii Rroxscaffold_6G00388310
rosa_rugosa Rorug03G0291500
rosa_samantha Rh3AG334800 Rh3BG372500 Rh3CG368900 Rh3DG369800
rosa_wichuraiana Rw3G029430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 288
AccB7I CCANNNNNTGG 1 cut(s) 346
AciI CCGC 3 cut(s) 194, 257, 362
AclWI GGATC 7 cut(s) 220, 430, 443, 646, 725, 781, 794
AcoI YGGCCR 1 cut(s) 63
AcsI RAATTY 2 cut(s) 629, 999
AcuI CTGAAG 4 cut(s) 359, 483, 851, 864
AcyI GRCGYC 1 cut(s) 110
AdeI CACNNNGTG 1 cut(s) 346
AfaI GTAC 2 cut(s) 239, 684
AfiI CCNNNNNNNGG 4 cut(s) 241, 289, 346, 1031
AgeI ACCGGT 1 cut(s) 42
AgsI TTSAA 6 cut(s) 91, 484, 634, 678, 826, 947
AjiI CACGTC 1 cut(s) 346
AjnI CCWGG 2 cut(s) 431, 474
AluBI AGCT 3 cut(s) 379, 503, 938
AluI AGCT 3 cut(s) 379, 503, 938
Alw21I GWGCWC 1 cut(s) 165
Alw26I GTCTC 2 cut(s) 155, 350
AlwI GGATC 7 cut(s) 220, 430, 443, 646, 725, 781, 794
AlwNI CAGNNNCTG 1 cut(s) 235
AoxI GGCC 3 cut(s) 5, 63, 420
ApeKI GCWGC 4 cut(s) 569, 692, 935, 992
ApoI RAATTY 2 cut(s) 629, 999
AsiGI ACCGGT 1 cut(s) 42
AspLEI GCGC 3 cut(s) 173, 247, 289
AspS9I GGNCC 1 cut(s) 5
AsuC2I CCSGG 2 cut(s) 188, 242
AsuHPI GGTGA 5 cut(s) 46, 61, 93, 361, 654
BamHI GGATCC 2 cut(s) 435, 786
BbsI GAAGAC 1 cut(s) 970
Bbv12I GWGCWC 1 cut(s) 165
BbvI GCAGC 4 cut(s) 556, 679, 947, 1004
BccI CCATC 3 cut(s) 470, 532, 805
BceAI ACGGC 1 cut(s) 237
BciT130I CCWGG 2 cut(s) 433, 476
BcnI CCSGG 2 cut(s) 188, 242
BcoDI GTCTC 2 cut(s) 155, 350
BfoI RGCGCY 1 cut(s) 248
BisI GCNGC 4 cut(s) 570, 693, 936, 993
BlpI GCTNAGC 1 cut(s) 248
BlsI GCNGC 4 cut(s) 571, 694, 937, 994
Bme1390I CCNGG 4 cut(s) 188, 242, 433, 476
BmgBI CACGTC 1 cut(s) 346
BmgT120I GGNCC 1 cut(s) 5
BmiI GGNNCC 5 cut(s) 6, 192, 338, 437, 788
BmrFI CCNGG 4 cut(s) 188, 242, 433, 476
BmrI ACTGGG 3 cut(s) 40, 336, 916
BmsI GCATC 4 cut(s) 518, 668, 748, 979
BmuI ACTGGG 3 cut(s) 40, 336, 916
BpiI GAAGAC 1 cut(s) 970
BplI GAGNNNNNCTC 6 cut(s) 284, 316, 287, 319, 508, 540
Bpu1102I GCTNAGC 1 cut(s) 248
BpuMI CCSGG 2 cut(s) 188, 242
BsaBI GATNNNNATC 1 cut(s) 716
BsaHI GRCGYC 1 cut(s) 110
BsaI GGTCTC 1 cut(s) 350
BsaJI CCNNGG 2 cut(s) 490, 778
BsaWI WCCGGW 1 cut(s) 42
BsaXI ACNNNNNCTCC 2 cut(s) 721, 751
Bsc4I CCNNNNNNNGG 4 cut(s) 241, 289, 346, 1031
Bse118I RCCGGY 3 cut(s) 42, 61, 103
Bse1I ACTGG 6 cut(s) 35, 331, 613, 922, 961, 974
Bse8I GATNNNNATC 1 cut(s) 716
BseBI CCWGG 2 cut(s) 433, 476
BseDI CCNNGG 2 cut(s) 490, 778
BseGI GGATG 2 cut(s) 265, 994
BseJI GATNNNNATC 1 cut(s) 716
BseLI CCNNNNNNNGG 4 cut(s) 241, 289, 346, 1031
BseMII CTCAG 2 cut(s) 239, 413
BseNI ACTGG 6 cut(s) 35, 331, 613, 922, 961, 974
BseRI GAGGAG 5 cut(s) 292, 295, 308, 729, 852
BseXI GCAGC 4 cut(s) 556, 679, 947, 1004
BseYI CCCAGC 1 cut(s) 503
BshFI GGCC 3 cut(s) 7, 65, 422
BshTI ACCGGT 1 cut(s) 42
BsiHKAI GWGCWC 1 cut(s) 165
BsiSI CCGG 5 cut(s) 43, 62, 104, 187, 242
BslFI GGGAC 5 cut(s) 126, 248, 254, 260, 266
BslI CCNNNNNNNGG 4 cut(s) 241, 289, 346, 1031
BsmAI GTCTC 2 cut(s) 155, 350
BsmFI GGGAC 5 cut(s) 126, 248, 254, 260, 266
BsnI GGCC 3 cut(s) 7, 65, 422
Bso31I GGTCTC 1 cut(s) 350
Bsp1286I GDGCHC 1 cut(s) 165
Bsp143I GATC 8 cut(s) 225, 385, 435, 601, 643, 651, 717, 786
Bsp1720I GCTNAGC 1 cut(s) 248
Bsp19I CCATGG 1 cut(s) 490
BspACI CCGC 3 cut(s) 194, 257, 362
BspANI GGCC 3 cut(s) 7, 65, 422
BspCNI CTCAG 2 cut(s) 240, 412
BspHI TCATGA 2 cut(s) 321, 846
BspLI GGNNCC 5 cut(s) 6, 192, 338, 437, 788
BspPI GGATC 7 cut(s) 220, 430, 443, 646, 725, 781, 794
BspTNI GGTCTC 1 cut(s) 350
BsrFI RCCGGY 3 cut(s) 42, 61, 103
BsrI ACTGG 6 cut(s) 35, 331, 613, 922, 961, 974
BssAI RCCGGY 3 cut(s) 42, 61, 103
BssECI CCNNGG 2 cut(s) 490, 778
BssMI GATC 8 cut(s) 225, 385, 435, 601, 643, 651, 717, 786
BssNI GRCGYC 1 cut(s) 110
BssT1I CCWWGG 2 cut(s) 490, 778
Bst2UI CCWGG 2 cut(s) 433, 476
Bst4CI ACNGT 2 cut(s) 530, 875
Bst6I CTCTTC 2 cut(s) 378, 870
BstACI GRCGYC 1 cut(s) 110
BstC8I GCNNGC 2 cut(s) 9, 63
BstDEI CTNAG 2 cut(s) 248, 399
BstDSI CCRYGG 1 cut(s) 490
BstENI CCTNNNNNAGG 1 cut(s) 1029
BstF5I GGATG 2 cut(s) 265, 994
BstH2I RGCGCY 1 cut(s) 248
BstHHI GCGC 3 cut(s) 173, 247, 289
BstKTI GATC 8 cut(s) 228, 388, 438, 604, 646, 654, 720, 789
BstMAI GTCTC 2 cut(s) 155, 350
BstMBI GATC 8 cut(s) 225, 385, 435, 601, 643, 651, 717, 786
BstMWI GCNNNNNNNGC 2 cut(s) 569, 767
BstNI CCWGG 2 cut(s) 433, 476
BstSCI CCNGG 4 cut(s) 186, 240, 431, 474
BstV1I GCAGC 4 cut(s) 556, 679, 947, 1004
BstV2I GAAGAC 1 cut(s) 970
BstX2I RGATCY 2 cut(s) 435, 786
BstYI RGATCY 2 cut(s) 435, 786
BsuRI GGCC 3 cut(s) 7, 65, 422
BtgI CCRYGG 1 cut(s) 490
BtgZI GCGATG 1 cut(s) 433
BtrI CACGTC 1 cut(s) 346
BtsCI GGATG 2 cut(s) 265, 994
BtsIMutI CAGTG 1 cut(s) 880
Cac8I GCNNGC 2 cut(s) 9, 63
CaiI CAGNNNCTG 1 cut(s) 235
CciI TCATGA 2 cut(s) 321, 846
CfoI GCGC 3 cut(s) 173, 247, 289
Cfr10I RCCGGY 3 cut(s) 42, 61, 103
Cfr13I GGNCC 1 cut(s) 5
CseI GACGC 1 cut(s) 118
Csp6I GTAC 2 cut(s) 238, 683
CspAI ACCGGT 1 cut(s) 42
CviAII CATG 7 cut(s) 322, 410, 491, 656, 749, 799, 847
CviQI GTAC 2 cut(s) 238, 683
DdeI CTNAG 2 cut(s) 248, 399
DpnI GATC 8 cut(s) 227, 387, 437, 603, 645, 653, 719, 788
DpnII GATC 8 cut(s) 225, 385, 435, 601, 643, 651, 717, 786
DraIII CACNNNGTG 1 cut(s) 346
EaeI YGGCCR 1 cut(s) 63
Eam1104I CTCTTC 2 cut(s) 378, 870
EarI CTCTTC 2 cut(s) 378, 870
EciI GGCGGA 1 cut(s) 183
Eco130I CCWWGG 2 cut(s) 490, 778
Eco31I GGTCTC 1 cut(s) 350
Eco57I CTGAAG 4 cut(s) 359, 483, 851, 864
EcoNI CCTNNNNNAGG 1 cut(s) 1029
EcoO109I RGGNCCY 1 cut(s) 5
EcoRI GAATTC 1 cut(s) 629
EcoRII CCWGG 2 cut(s) 431, 474
EcoT14I CCWWGG 2 cut(s) 490, 778
EcoT22I ATGCAT 1 cut(s) 661
ErhI CCWWGG 2 cut(s) 490, 778
FaeI CATG 7 cut(s) 325, 413, 494, 659, 752, 802, 850
FaqI GGGAC 5 cut(s) 126, 248, 254, 260, 266
FatI CATG 7 cut(s) 321, 409, 490, 655, 748, 798, 846
FauI CCCGC 1 cut(s) 369
Fnu4HI GCNGC 4 cut(s) 570, 693, 936, 993
FokI GGATG 2 cut(s) 272, 1001
Fsp4HI GCNGC 4 cut(s) 570, 693, 936, 993
FspI TGCGCA 1 cut(s) 288
GlaI GCGC 3 cut(s) 172, 246, 288
GluI GCNGC 4 cut(s) 570, 693, 936, 993
GsaI CCCAGC 1 cut(s) 507
HaeII RGCGCY 1 cut(s) 248
HaeIII GGCC 3 cut(s) 7, 65, 422
HapII CCGG 5 cut(s) 43, 62, 104, 187, 242
HgaI GACGC 1 cut(s) 118
HhaI GCGC 3 cut(s) 173, 247, 289
Hin1I GRCGYC 1 cut(s) 110
Hin1II CATG 7 cut(s) 325, 413, 494, 659, 752, 802, 850
Hin6I GCGC 3 cut(s) 171, 245, 287
HinP1I GCGC 3 cut(s) 171, 245, 287
HincII GTYRAC 1 cut(s) 775
HindII GTYRAC 1 cut(s) 775
HinfI GANTC 4 cut(s) 296, 517, 581, 850
HpaII CCGG 5 cut(s) 43, 62, 104, 187, 242
HphI GGTGA 5 cut(s) 46, 61, 93, 361, 654
Hpy166II GTNNAC 1 cut(s) 775
Hpy188I TCNGA 9 cut(s) 85, 221, 385, 402, 534, 606, 807, 855, 883
Hpy188III TCNNGA 7 cut(s) 176, 229, 322, 709, 790, 847, 869
Hpy8I GTNNAC 1 cut(s) 775
Hpy99I CGWCG 3 cut(s) 112, 203, 347
HpyAV CCTTC 5 cut(s) 19, 90, 583, 715, 1025
HpyCH4III ACNGT 2 cut(s) 530, 875
HpyCH4IV ACGT 2 cut(s) 345, 471
HpyCH4V TGCA 5 cut(s) 659, 820, 910, 935, 992
HpyF10VI GCNNNNNNNGC 2 cut(s) 569, 767
HpyF3I CTNAG 2 cut(s) 248, 399
HpySE526I ACGT 2 cut(s) 345, 471
Hsp92I GRCGYC 1 cut(s) 110
Hsp92II CATG 7 cut(s) 325, 413, 494, 659, 752, 802, 850
HspAI GCGC 3 cut(s) 171, 245, 287
KroI GCCGGC 1 cut(s) 61
KroNI GCCGGC 1 cut(s) 63
Kzo9I GATC 8 cut(s) 225, 385, 435, 601, 643, 651, 717, 786
LmnI GCTCC 1 cut(s) 178
Lsp1109I GCAGC 4 cut(s) 556, 679, 947, 1004
LweI GCATC 4 cut(s) 518, 668, 748, 979
MaeII ACGT 2 cut(s) 345, 471
MaeIII GTNAC 4 cut(s) 34, 518, 885, 962
MalI GATC 8 cut(s) 227, 387, 437, 603, 645, 653, 719, 788
MboI GATC 8 cut(s) 225, 385, 435, 601, 643, 651, 717, 786
MboII GAAGA 6 cut(s) 175, 365, 407, 820, 857, 970
MfeI CAATTG 1 cut(s) 678
MflI RGATCY 2 cut(s) 435, 786
MhlI GDGCHC 1 cut(s) 165
MluCI AATT 5 cut(s) 629, 678, 841, 948, 999
MlyI GAGTC 3 cut(s) 305, 526, 575
Mph1103I ATGCAT 1 cut(s) 661
MroNI GCCGGC 1 cut(s) 61
MseI TTAA 3 cut(s) 840, 926, 1042
MslI CAYNNNNRTG 1 cut(s) 747
MspA1I CMGCKG 2 cut(s) 503, 938
MspI CCGG 5 cut(s) 43, 62, 104, 187, 242
MspR9I CCNGG 4 cut(s) 188, 242, 433, 476
MunI CAATTG 1 cut(s) 678
MvaI CCWGG 2 cut(s) 433, 476
MwoI GCNNNNNNNGC 2 cut(s) 569, 767
NaeI GCCGGC 1 cut(s) 63
NciI CCSGG 2 cut(s) 188, 242
NcoI CCATGG 1 cut(s) 490
NdeII GATC 8 cut(s) 225, 385, 435, 601, 643, 651, 717, 786
NgoMIV GCCGGC 1 cut(s) 61
NlaIII CATG 7 cut(s) 325, 413, 494, 659, 752, 802, 850
NlaIV GGNNCC 5 cut(s) 6, 192, 338, 437, 788
NmeAIII GCCGAG 1 cut(s) 132
NmuCI GTSAC 2 cut(s) 34, 518
NsbI TGCGCA 1 cut(s) 288
NsiI ATGCAT 1 cut(s) 661
PagI TCATGA 2 cut(s) 321, 846
PcsI WCGNNNNNNNCGW 1 cut(s) 339
PdiI GCCGGC 1 cut(s) 63
PfeI GAWTC 1 cut(s) 850
PflMI CCANNNNNTGG 1 cut(s) 346
PinAI ACCGGT 1 cut(s) 42
PkrI GCNGC 4 cut(s) 571, 694, 937, 994
PleI GAGTC 3 cut(s) 304, 525, 575
PpsI GAGTC 3 cut(s) 304, 525, 575
Psp6I CCWGG 2 cut(s) 431, 474
PspFI CCCAGC 1 cut(s) 503
PspGI CCWGG 2 cut(s) 431, 474
PspN4I GGNNCC 5 cut(s) 6, 192, 338, 437, 788
PspPI GGNCC 1 cut(s) 5
PstNI CAGNNNCTG 1 cut(s) 235
PsuI RGATCY 2 cut(s) 435, 786
PvuII CAGCTG 2 cut(s) 503, 938
RsaI GTAC 2 cut(s) 239, 684
RsaNI GTAC 2 cut(s) 238, 683
RseI CAYNNNNRTG 1 cut(s) 747
SaqAI TTAA 3 cut(s) 840, 926, 1042
SatI GCNGC 4 cut(s) 570, 693, 936, 993
Sau3AI GATC 8 cut(s) 225, 385, 435, 601, 643, 651, 717, 786
Sau96I GGNCC 1 cut(s) 5
SchI GAGTC 3 cut(s) 305, 526, 575
ScrFI CCNGG 4 cut(s) 188, 242, 433, 476
SduI GDGCHC 1 cut(s) 165
SfaNI GCATC 4 cut(s) 518, 668, 748, 979
SgrAI CRCCGGYG 1 cut(s) 103
SmiMI CAYNNNNRTG 1 cut(s) 747
Sse9I AATT 5 cut(s) 629, 678, 841, 948, 999
SsiI CCGC 3 cut(s) 194, 257, 362
StyD4I CCNGG 4 cut(s) 186, 240, 431, 474
StyI CCWWGG 2 cut(s) 490, 778
TaaI ACNGT 2 cut(s) 530, 875
TaiI ACGT 2 cut(s) 348, 474
TaqI TCGA 3 cut(s) 574, 638, 708
TasI AATT 5 cut(s) 629, 678, 841, 948, 999
TfiI GAWTC 1 cut(s) 850
Tru1I TTAA 3 cut(s) 840, 926, 1042
Tru9I TTAA 3 cut(s) 840, 926, 1042
TscAI CASTG 1 cut(s) 880
TseFI GTSAC 2 cut(s) 34, 518
TseI GCWGC 4 cut(s) 569, 692, 935, 992
Tsp45I GTSAC 2 cut(s) 34, 518
TspDTI ATGAA 4 cut(s) 436, 602, 765, 835
TspRI CASTG 1 cut(s) 880
Van91I CCANNNNNTGG 1 cut(s) 346
XagI CCTNNNNNAGG 1 cut(s) 1029
XapI RAATTY 2 cut(s) 629, 999
Zsp2I ATGCAT 1 cut(s) 661
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.