Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002893.1

Orthogroup ID

OG0015115

Physical Location & Seq

Genomic Coordinates Reverse (-)

59851 .. 61668

Gene Structure 1818 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002893.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

atgggaggcaggcccccagaaataaggaaggactgggtgacaaaccggtgggtgatattctcaccggccagagccaagcgaccttcggacttcaaatccaaatcaccggcgacgccgccaacccaacaacaacaatcttgtcccttttgtctcggcaacgagcacgactgcgctcccgaaatcttccgggttccgcccgacgaccccgaatggaaactccgagtgatccagaacatgtacccggcgctgagccgtgcggaggtccccgtccctgcccaggaggaatcctcctcctcctcctcctccttgggtcaggtcatgactgggttcgggttccacgacgtggtgattgagaccccgcttcactctcttcacctctccgatctttccccaactcagatcgcccatgttcttcgggcctataccaccaggatccaccacttcgtcactaatcattccatcaaatacgttcaggtgtttaaaaaccatggtgcttcagctggggcatcaatgagtcactctcacagtcagatgatggctctgcctattgttcctcctgctgttgctgctcgacttgactctatgaaggactattttaatcggactggcaaatgtagtatctgtgaattcaactcaaacgatcttttgatccatgcatcaccccattttatttcaattgtaccttatgctgctacatttcccttcgagatgtggatcattcctctcactcactctcctcatttccatgaacttgatgctgacaaggcagttgaccttggggggatcctgaaactcatgcttcagaagatggctttgcagttgaataatccaccatttaatttcatgattcagacttctcctcttcaggactgtgcttcagagttacctcactcccattggttcttgcaaataatacctcagttaagtgttgcagctggttttgaaattggaactggctgttacataaatccagtcttcccagaggatgcagcaaaagttttgagggaagtaaatgttttacctttggaaggagatgattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005975 GO:0008150 GO:0008152 GO:0008270 GO:0010646 GO:0010647 GO:0016740 GO:0016772 GO:0016779 GO:0017076 GO:0030554 GO:0032101 GO:0032103 GO:0032104 GO:0032106 GO:0032107 GO:0032109 GO:0032553 GO:0032555 GO:0032559 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043531 GO:0044238 GO:0046872 GO:0046914 GO:0047345 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0065007 GO:0070566 GO:0071704 GO:0080040 GO:0080134 GO:0080135 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00052 ko00520 ko01100 ko04917 map00052 map00520 map01100 map04917

Pfam Domains

Protein Families

GalP_UDP_tr_C GalP_UDP_transf

Protein Analysis

346

Amino Acids

38.52

Weight (kDa)

6.2

Isoelectric Point (pI)

55.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015115)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18200
fragaria_vesca	FvH4_1g28080
malus_domestica	MD12G1003100.v1.1
prunus_persica	Prupe.7G003700_v2.0.a1
pyrus_communis	pycom12g00280
rosa_chinensis	RchiOBHm_Chr3g0497171
rosa_laevigata	RLG00000022474
rosa_multiflora	Rmu_sc0002893.1_g000014 Rmu_sc0007568.1_g000003
rosa_roxburghii	Rroxscaffold_6G00388310
rosa_rugosa	Rorug03G0291500
rosa_samantha	Rh3AG334800 Rh3BG372500 Rh3CG368900 Rh3DG369800
rosa_wichuraiana	Rw3G029430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	343
AciI	CCGC	4 cut(s)	116, 194, 257, 359
AclWI	GGATC	7 cut(s)	220, 427, 440, 643, 722, 778, 791
AcoI	YGGCCR	1 cut(s)	66
AcsI	RAATTY	1 cut(s)	626
AcuI	CTGAAG	4 cut(s)	480, 785, 848, 861
AcyI	GRCGYC	1 cut(s)	113
AdeI	CACNNNGTG	1 cut(s)	343
AfaI	GTAC	2 cut(s)	239, 681
AfiI	CCNNNNNNNGG	4 cut(s)	259, 277, 343, 1028
AflIII	ACRYGT	1 cut(s)	234
AgeI	ACCGGT	1 cut(s)	45
AgsI	TTSAA	5 cut(s)	94, 631, 675, 823, 944
AjiI	CACGTC	1 cut(s)	343
AjnI	CCWGG	2 cut(s)	276, 428
AluBI	AGCT	2 cut(s)	500, 935
AluI	AGCT	2 cut(s)	500, 935
Alw21I	GWGCWC	1 cut(s)	165
Alw26I	GTCTC	2 cut(s)	155, 347
AlwI	GGATC	7 cut(s)	220, 427, 440, 643, 722, 778, 791
AoxI	GGCC	3 cut(s)	11, 66, 417
ApeKI	GCWGC	4 cut(s)	566, 689, 932, 989
ApoI	RAATTY	1 cut(s)	626
AsiGI	ACCGGT	1 cut(s)	45
AspLEI	GCGC	2 cut(s)	173, 247
AspS9I	GGNCC	3 cut(s)	12, 262, 417
AsuC2I	CCSGG	2 cut(s)	188, 242
AsuHPI	GGTGA	7 cut(s)	49, 54, 64, 96, 358, 365, 651
AvaII	GGWCC	1 cut(s)	262
BamHI	GGATCC	2 cut(s)	432, 783
BbsI	GAAGAC	1 cut(s)	967
Bbv12I	GWGCWC	1 cut(s)	165
BbvI	GCAGC	4 cut(s)	553, 676, 944, 1001
BccI	CCATC	3 cut(s)	467, 529, 802
BceAI	ACGGC	1 cut(s)	237
BciT130I	CCWGG	2 cut(s)	278, 430
BcnI	CCSGG	2 cut(s)	188, 242
BcoDI	GTCTC	2 cut(s)	155, 347
BfoI	RGCGCY	1 cut(s)	248
BisI	GCNGC	5 cut(s)	116, 567, 690, 933, 990
BlpI	GCTNAGC	1 cut(s)	248
BlsI	GCNGC	5 cut(s)	117, 568, 691, 934, 991
Bme1390I	CCNGG	4 cut(s)	188, 242, 278, 430
Bme18I	GGWCC	1 cut(s)	262
BmgBI	CACGTC	1 cut(s)	343
BmgT120I	GGNCC	3 cut(s)	12, 262, 417
BmiI	GGNNCC	6 cut(s)	14, 192, 264, 335, 434, 785
BmrFI	CCNGG	4 cut(s)	188, 242, 278, 430
BmrI	ACTGGG	2 cut(s)	43, 333
BmsI	GCATC	4 cut(s)	515, 665, 745, 976
BmuI	ACTGGG	2 cut(s)	43, 333
BpiI	GAAGAC	1 cut(s)	967
BplI	GAGNNNNNCTC	4 cut(s)	272, 304, 505, 537
Bpu1102I	GCTNAGC	1 cut(s)	248
BpuMI	CCSGG	2 cut(s)	188, 242
BsaBI	GATNNNNATC	1 cut(s)	713
BsaHI	GRCGYC	1 cut(s)	113
BsaI	GGTCTC	1 cut(s)	347
BsaJI	CCNNGG	4 cut(s)	276, 306, 487, 775
BsaWI	WCCGGW	1 cut(s)	45
BsaXI	ACNNNNNCTCC	2 cut(s)	718, 748
Bsc4I	CCNNNNNNNGG	4 cut(s)	259, 277, 343, 1028
Bse118I	RCCGGY	3 cut(s)	45, 64, 106
Bse1I	ACTGG	5 cut(s)	38, 328, 610, 958, 971
Bse8I	GATNNNNATC	1 cut(s)	713
BseBI	CCWGG	2 cut(s)	278, 430
BseDI	CCNNGG	4 cut(s)	276, 306, 487, 775
BseGI	GGATG	1 cut(s)	991
BseJI	GATNNNNATC	1 cut(s)	713
BseLI	CCNNNNNNNGG	4 cut(s)	259, 277, 343, 1028
BseMII	CTCAG	3 cut(s)	239, 410, 932
BseNI	ACTGG	5 cut(s)	38, 328, 610, 958, 971
BseRI	GAGGAG	7 cut(s)	280, 283, 286, 289, 292, 726, 849
BseXI	GCAGC	4 cut(s)	553, 676, 944, 1001
BseYI	CCCAGC	1 cut(s)	500
BshFI	GGCC	3 cut(s)	13, 68, 419
BshTI	ACCGGT	1 cut(s)	45
BsiHKAI	GWGCWC	1 cut(s)	165
BsiSI	CCGG	5 cut(s)	46, 65, 107, 187, 242
BslFI	GGGAC	3 cut(s)	126, 248, 254
BslI	CCNNNNNNNGG	4 cut(s)	259, 277, 343, 1028
BsmAI	GTCTC	2 cut(s)	155, 347
BsmFI	GGGAC	3 cut(s)	126, 248, 254
BsnI	GGCC	3 cut(s)	13, 68, 419
Bso31I	GGTCTC	1 cut(s)	347
Bsp1286I	GDGCHC	1 cut(s)	165
Bsp143I	GATC	8 cut(s)	225, 382, 399, 432, 640, 648, 714, 783
Bsp1720I	GCTNAGC	1 cut(s)	248
Bsp19I	CCATGG	1 cut(s)	487
BspACI	CCGC	4 cut(s)	116, 194, 257, 359
BspANI	GGCC	3 cut(s)	13, 68, 419
BspCNI	CTCAG	3 cut(s)	240, 409, 931
BspHI	TCATGA	2 cut(s)	318, 843
BspLI	GGNNCC	6 cut(s)	14, 192, 264, 335, 434, 785
BspPI	GGATC	7 cut(s)	220, 427, 440, 643, 722, 778, 791
BspTNI	GGTCTC	1 cut(s)	347
BsrFI	RCCGGY	3 cut(s)	45, 64, 106
BsrI	ACTGG	5 cut(s)	38, 328, 610, 958, 971
BssAI	RCCGGY	3 cut(s)	45, 64, 106
BssECI	CCNNGG	4 cut(s)	276, 306, 487, 775
BssMI	GATC	8 cut(s)	225, 382, 399, 432, 640, 648, 714, 783
BssNI	GRCGYC	1 cut(s)	113
BssT1I	CCWWGG	3 cut(s)	306, 487, 775
Bst2UI	CCWGG	2 cut(s)	278, 430
Bst4CI	ACNGT	2 cut(s)	527, 872
Bst6I	CTCTTC	2 cut(s)	375, 867
BstACI	GRCGYC	1 cut(s)	113
BstC8I	GCNNGC	1 cut(s)	11
BstDEI	CTNAG	3 cut(s)	248, 396, 918
BstDSI	CCRYGG	1 cut(s)	487
BstENI	CCTNNNNNAGG	1 cut(s)	1026
BstF5I	GGATG	1 cut(s)	991
BstH2I	RGCGCY	1 cut(s)	248
BstHHI	GCGC	2 cut(s)	173, 247
BstKTI	GATC	8 cut(s)	228, 385, 402, 435, 643, 651, 717, 786
BstMAI	GTCTC	2 cut(s)	155, 347
BstMBI	GATC	8 cut(s)	225, 382, 399, 432, 640, 648, 714, 783
BstMWI	GCNNNNNNNGC	2 cut(s)	566, 764
BstNI	CCWGG	2 cut(s)	278, 430
BstNSI	RCATGY	1 cut(s)	238
BstSCI	CCNGG	4 cut(s)	186, 240, 276, 428
BstV1I	GCAGC	4 cut(s)	553, 676, 944, 1001
BstV2I	GAAGAC	1 cut(s)	967
BstX2I	RGATCY	2 cut(s)	432, 783
BstYI	RGATCY	2 cut(s)	432, 783
BsuRI	GGCC	3 cut(s)	13, 68, 419
BtgI	CCRYGG	1 cut(s)	487
BtrI	CACGTC	1 cut(s)	343
BtsCI	GGATG	1 cut(s)	991
Cac8I	GCNNGC	1 cut(s)	11
CciI	TCATGA	2 cut(s)	318, 843
CfoI	GCGC	2 cut(s)	173, 247
Cfr10I	RCCGGY	3 cut(s)	45, 64, 106
Cfr13I	GGNCC	3 cut(s)	12, 262, 417
CseI	GACGC	1 cut(s)	121
Csp6I	GTAC	2 cut(s)	238, 680
CspAI	ACCGGT	1 cut(s)	45
CviAII	CATG	8 cut(s)	235, 319, 407, 488, 653, 746, 796, 844
CviQI	GTAC	2 cut(s)	238, 680
DdeI	CTNAG	3 cut(s)	248, 396, 918
DpnI	GATC	8 cut(s)	227, 384, 401, 434, 642, 650, 716, 785
DpnII	GATC	8 cut(s)	225, 382, 399, 432, 640, 648, 714, 783
DraI	TTTAAA	1 cut(s)	481
DraIII	CACNNNGTG	1 cut(s)	343
EaeI	YGGCCR	1 cut(s)	66
Eam1104I	CTCTTC	2 cut(s)	375, 867
EarI	CTCTTC	2 cut(s)	375, 867
EciI	GGCGGA	1 cut(s)	183
Eco130I	CCWWGG	3 cut(s)	306, 487, 775
Eco31I	GGTCTC	1 cut(s)	347
Eco47I	GGWCC	1 cut(s)	262
Eco57I	CTGAAG	4 cut(s)	480, 785, 848, 861
EcoNI	CCTNNNNNAGG	1 cut(s)	1026
EcoO109I	RGGNCCY	2 cut(s)	12, 262
EcoRI	GAATTC	1 cut(s)	626
EcoRII	CCWGG	2 cut(s)	276, 428
EcoT14I	CCWWGG	3 cut(s)	306, 487, 775
EcoT22I	ATGCAT	1 cut(s)	658
ErhI	CCWWGG	3 cut(s)	306, 487, 775
FaeI	CATG	8 cut(s)	238, 322, 410, 491, 656, 749, 799, 847
FaqI	GGGAC	3 cut(s)	126, 248, 254
FatI	CATG	8 cut(s)	234, 318, 406, 487, 652, 745, 795, 843
FauI	CCCGC	1 cut(s)	366
Fnu4HI	GCNGC	5 cut(s)	116, 567, 690, 933, 990
FokI	GGATG	1 cut(s)	998
Fsp4HI	GCNGC	5 cut(s)	116, 567, 690, 933, 990
GlaI	GCGC	2 cut(s)	172, 246
GluI	GCNGC	5 cut(s)	116, 567, 690, 933, 990
GsaI	CCCAGC	1 cut(s)	504
HaeII	RGCGCY	1 cut(s)	248
HaeIII	GGCC	3 cut(s)	13, 68, 419
HapII	CCGG	5 cut(s)	46, 65, 107, 187, 242
HgaI	GACGC	1 cut(s)	121
HhaI	GCGC	2 cut(s)	173, 247
Hin1I	GRCGYC	1 cut(s)	113
Hin1II	CATG	8 cut(s)	238, 322, 410, 491, 656, 749, 799, 847
Hin6I	GCGC	2 cut(s)	171, 245
HinP1I	GCGC	2 cut(s)	171, 245
HincII	GTYRAC	1 cut(s)	772
HindII	GTYRAC	1 cut(s)	772
HinfI	GANTC	4 cut(s)	284, 514, 578, 847
HpaII	CCGG	5 cut(s)	46, 65, 107, 187, 242
HphI	GGTGA	7 cut(s)	49, 54, 64, 96, 358, 365, 651
Hpy166II	GTNNAC	1 cut(s)	772
Hpy188I	TCNGA	9 cut(s)	88, 221, 382, 399, 531, 603, 804, 852, 880
Hpy188III	TCNNGA	7 cut(s)	176, 229, 319, 706, 787, 844, 866
Hpy8I	GTNNAC	1 cut(s)	772
Hpy99I	CGWCG	3 cut(s)	115, 203, 344
HpyAV	CCTTC	5 cut(s)	22, 93, 580, 712, 1022
HpyCH4III	ACNGT	2 cut(s)	527, 872
HpyCH4IV	ACGT	2 cut(s)	342, 468
HpyCH4V	TGCA	5 cut(s)	656, 817, 907, 932, 989
HpyF10VI	GCNNNNNNNGC	2 cut(s)	566, 764
HpyF3I	CTNAG	3 cut(s)	248, 396, 918
HpySE526I	ACGT	2 cut(s)	342, 468
Hsp92I	GRCGYC	1 cut(s)	113
Hsp92II	CATG	8 cut(s)	238, 322, 410, 491, 656, 749, 799, 847
HspAI	GCGC	2 cut(s)	171, 245
Kzo9I	GATC	8 cut(s)	225, 382, 399, 432, 640, 648, 714, 783
LmnI	GCTCC	1 cut(s)	178
Lsp1109I	GCAGC	4 cut(s)	553, 676, 944, 1001
LweI	GCATC	4 cut(s)	515, 665, 745, 976
MaeII	ACGT	2 cut(s)	342, 468
MaeIII	GTNAC	5 cut(s)	37, 445, 515, 882, 959
MalI	GATC	8 cut(s)	227, 384, 401, 434, 642, 650, 716, 785
MboI	GATC	8 cut(s)	225, 382, 399, 432, 640, 648, 714, 783
MboII	GAAGA	6 cut(s)	175, 362, 404, 817, 854, 967
MfeI	CAATTG	1 cut(s)	675
MflI	RGATCY	2 cut(s)	432, 783
MhlI	GDGCHC	1 cut(s)	165
MluCI	AATT	4 cut(s)	626, 675, 838, 945
MlyI	GAGTC	2 cut(s)	523, 572
Mph1103I	ATGCAT	1 cut(s)	658
MseI	TTAA	5 cut(s)	480, 597, 837, 923, 1039
MslI	CAYNNNNRTG	1 cut(s)	744
MspA1I	CMGCKG	2 cut(s)	500, 935
MspI	CCGG	5 cut(s)	46, 65, 107, 187, 242
MspR9I	CCNGG	4 cut(s)	188, 242, 278, 430
MunI	CAATTG	1 cut(s)	675
MvaI	CCWGG	2 cut(s)	278, 430
MwoI	GCNNNNNNNGC	2 cut(s)	566, 764
NciI	CCSGG	2 cut(s)	188, 242
NcoI	CCATGG	1 cut(s)	487
NdeII	GATC	8 cut(s)	225, 382, 399, 432, 640, 648, 714, 783
NlaIII	CATG	8 cut(s)	238, 322, 410, 491, 656, 749, 799, 847
NlaIV	GGNNCC	6 cut(s)	14, 192, 264, 335, 434, 785
NmeAIII	GCCGAG	1 cut(s)	132
NmuCI	GTSAC	3 cut(s)	37, 445, 515
NsiI	ATGCAT	1 cut(s)	658
NspI	RCATGY	1 cut(s)	238
PagI	TCATGA	2 cut(s)	318, 843
PciI	ACATGT	1 cut(s)	234
PcsI	WCGNNNNNNNCGW	1 cut(s)	336
PfeI	GAWTC	2 cut(s)	284, 847
PflMI	CCANNNNNTGG	1 cut(s)	343
PinAI	ACCGGT	1 cut(s)	45
PkrI	GCNGC	5 cut(s)	117, 568, 691, 934, 991
PleI	GAGTC	2 cut(s)	522, 572
PpsI	GAGTC	2 cut(s)	522, 572
PpuMI	RGGWCCY	1 cut(s)	262
PscI	ACATGT	1 cut(s)	234
Psp5II	RGGWCCY	1 cut(s)	262
Psp6I	CCWGG	2 cut(s)	276, 428
PspFI	CCCAGC	1 cut(s)	500
PspGI	CCWGG	2 cut(s)	276, 428
PspN4I	GGNNCC	6 cut(s)	14, 192, 264, 335, 434, 785
PspPI	GGNCC	3 cut(s)	12, 262, 417
PspPPI	RGGWCCY	1 cut(s)	262
PsuI	RGATCY	2 cut(s)	432, 783
PvuII	CAGCTG	2 cut(s)	500, 935
RsaI	GTAC	2 cut(s)	239, 681
RsaNI	GTAC	2 cut(s)	238, 680
RseI	CAYNNNNRTG	1 cut(s)	744
SaqAI	TTAA	5 cut(s)	480, 597, 837, 923, 1039
SatI	GCNGC	5 cut(s)	116, 567, 690, 933, 990
Sau3AI	GATC	8 cut(s)	225, 382, 399, 432, 640, 648, 714, 783
Sau96I	GGNCC	3 cut(s)	12, 262, 417
SchI	GAGTC	2 cut(s)	523, 572
ScrFI	CCNGG	4 cut(s)	188, 242, 278, 430
SduI	GDGCHC	1 cut(s)	165
SfaNI	GCATC	4 cut(s)	515, 665, 745, 976
SgrAI	CRCCGGYG	1 cut(s)	106
SinI	GGWCC	1 cut(s)	262
SmiMI	CAYNNNNRTG	1 cut(s)	744
Sse9I	AATT	4 cut(s)	626, 675, 838, 945
SsiI	CCGC	4 cut(s)	116, 194, 257, 359
StyD4I	CCNGG	4 cut(s)	186, 240, 276, 428
StyI	CCWWGG	3 cut(s)	306, 487, 775
TaaI	ACNGT	2 cut(s)	527, 872
TaiI	ACGT	2 cut(s)	345, 471
TaqI	TCGA	2 cut(s)	571, 705
TasI	AATT	4 cut(s)	626, 675, 838, 945
TauI	GCSGC	1 cut(s)	118
TfiI	GAWTC	2 cut(s)	284, 847
Tru1I	TTAA	5 cut(s)	480, 597, 837, 923, 1039
Tru9I	TTAA	5 cut(s)	480, 597, 837, 923, 1039
TseFI	GTSAC	3 cut(s)	37, 445, 515
TseI	GCWGC	4 cut(s)	566, 689, 932, 989
Tsp45I	GTSAC	3 cut(s)	37, 445, 515
TspDTI	ATGAA	3 cut(s)	599, 762, 832
Van91I	CCANNNNNTGG	1 cut(s)	343
VpaK11BI	GGWCC	1 cut(s)	262
XagI	CCTNNNNNAGG	1 cut(s)	1026
XapI	RAATTY	1 cut(s)	626
XceI	RCATGY	1 cut(s)	238
Zsp2I	ATGCAT	1 cut(s)	658

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.