Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0015115

Physical Location & Seq

Genomic Coordinates Forward (+)

29756590 .. 29760227

Gene Structure 3638 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0291500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGCTTTGTGCAGGATCACAACTTCTGGACCTTCATAGTGTGAGTTCATATCTACAGAAGAGTATTTCTGTTTTCAGTGTTGCTGAGTTAGCAGAACTAGGACTGGTACCACATGTCATCACACTCAGATCAAGGGTTTCAGGTGATATGTGGTCAGGTTCTGAGGGTGGTGTTATTAAGATCTGGCCATGGGAATCCATTGAAAAATCTCTTTCTCTAAAGCCAGAGGAAAGACACATGGCAGCTTTACTGGTGGAGAGGTCATGCATTGACCTTAGGAGCCAGGTTATTGGGCTTCATCGCTTGGTTCTGTTGAACTTTTATCCTTATTTTATCAACTACATTACGCCTCATCAAAATGGTGTCACTGAATTACTCGCTGCAGCAGTACAGGCCTGCCATGATATGCTTAACCCCTCGCTGCTGATTAAGAAGGATCGTGATGTGAGTGGTGATGAGGATGAGGTGGAAGCGGAGAATGAAGATGAGGATGAGGTAGATGAAGAGAATACAGAGGATGAGGAGGAAGAATTTGACAATAATGATGCCAAAGATGGTGGATCTGGAGTAAAAGAAAACATACCAAAAAAGAGGAAATTTGCTGATTTTGATACACAACTTAATGACGCTGAAGCAAGTCTTAGGACTTTGAATAGATTAGCCAAAGAAAATATGGGTCCTGCTCCATCAGACTCGACAGATGGTTTTCTTTCTAATGAGGACTTCTGGAGGATTAAGGAATTAAAGGCAAAGCAGCGATTGGCTCAGCAGGGGTTGTTGAAAAAGAGCTCAGATGCGAAGTCAACAGCATTCAAGATTCCCACTTCTGATGAATTAAGCATTAAGCGAATAGATCCTGCTAAGCTTGAAGTCCATGTAAAAAGAAGAATGACCAAGGAGGAGAAGCTGGCATTAGTGAAAGCAGGGAGGGAGGATAGAGGGAAGTACATGGCTAAAGCTGCTGTAAAACGGAAGAAGTCGGGAGGCCTGAGCAATAAGCAGAAGGAACATAAGAAGGCTATGCCACTTGTTGCAAAGAGGGCAAAGGTAGCTAAATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005975 GO:0008150 GO:0008152 GO:0008270 GO:0010646 GO:0010647 GO:0016740 GO:0016772 GO:0016779 GO:0017076 GO:0030554 GO:0032101 GO:0032103 GO:0032104 GO:0032106 GO:0032107 GO:0032109 GO:0032553 GO:0032555 GO:0032559 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043531 GO:0044238 GO:0046872 GO:0046914 GO:0047345 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0065007 GO:0070566 GO:0071704 GO:0080040 GO:0080134 GO:0080135 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00052 ko00520 ko01100 ko04917 map00052 map00520 map01100 map04917

Pfam Domains

Protein Families

GalP_UDP_tr_C GalP_UDP_transf

Protein Analysis

353

Amino Acids

39.49

Weight (kDa)

6.3

Isoelectric Point (pI)

47.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_IP5PC_F	PF23754	39 - 96	1.9e-25	IP5P C-F beta-propeller
SDA1_HEAT	PF08158	88 - 141	1.8e-16	SDA1, HEAT repeat
SDA1_dom	PF05285	148 - 309	3.5e-07	SDA1, conserved domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0015115)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18200
fragaria_vesca	FvH4_1g28080
malus_domestica	MD12G1003100.v1.1
prunus_persica	Prupe.7G003700_v2.0.a1
pyrus_communis	pycom12g00280
rosa_chinensis	RchiOBHm_Chr3g0497171
rosa_laevigata	RLG00000022474
rosa_multiflora	Rmu_sc0002893.1_g000014 Rmu_sc0007568.1_g000003
rosa_roxburghii	Rroxscaffold_6G00388310
rosa_rugosa	Rorug03G0291500
rosa_samantha	Rh3AG334800 Rh3BG372500 Rh3CG368900 Rh3DG369800
rosa_wichuraiana	Rw3G029430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	106
AccB1I	GGYRCC	1 cut(s)	106
AciI	CCGC	1 cut(s)	473
AclWI	GGATC	4 cut(s)	22, 444, 568, 848
AcoI	YGGCCR	1 cut(s)	185
AcsI	RAATTY	2 cut(s)	530, 596
AcuI	CTGAAG	1 cut(s)	651
AfaI	GTAC	3 cut(s)	108, 390, 947
AflIII	ACRYGT	1 cut(s)	112
AgsI	TTSAA	6 cut(s)	203, 316, 652, 781, 814, 869
AjnI	CCWGG	1 cut(s)	282
AluBI	AGCT	6 cut(s)	245, 789, 865, 907, 959, 1052
AluI	AGCT	6 cut(s)	245, 789, 865, 907, 959, 1052
Alw21I	GWGCWC	1 cut(s)	791
AlwI	GGATC	4 cut(s)	22, 444, 568, 848
AlwNI	CAGNNNCTG	1 cut(s)	161
AoxI	GGCC	3 cut(s)	185, 393, 985
ApeKI	GCWGC	6 cut(s)	242, 380, 383, 421, 754, 959
ApoI	RAATTY	2 cut(s)	530, 596
Asp718I	GGTACC	1 cut(s)	106
AspS9I	GGNCC	2 cut(s)	28, 677
AsuHPI	GGTGA	2 cut(s)	155, 464
AvaII	GGWCC	2 cut(s)	28, 677
AxyI	CCTNAGG	1 cut(s)	275
BalI	TGGCCA	1 cut(s)	187
BanI	GGYRCC	1 cut(s)	106
BanII	GRGCYC	1 cut(s)	791
Bbv12I	GWGCWC	1 cut(s)	791
BbvI	GCAGC	6 cut(s)	254, 367, 395, 408, 766, 946
BccI	CCATC	3 cut(s)	548, 694, 695
BciT130I	CCWGG	1 cut(s)	284
BfaI	CTAG	1 cut(s)	98
BfmI	CTRYAG	2 cut(s)	53, 381
BglII	AGATCT	1 cut(s)	180
BisI	GCNGC	6 cut(s)	243, 381, 384, 422, 755, 960
BlpI	GCTNAGC	2 cut(s)	765, 861
BlsI	GCNGC	6 cut(s)	244, 382, 385, 423, 756, 961
Bme1390I	CCNGG	1 cut(s)	284
Bme18I	GGWCC	2 cut(s)	28, 677
BmgT120I	GGNCC	2 cut(s)	28, 677
BmiI	GGNNCC	3 cut(s)	108, 281, 678
BmrFI	CCNGG	1 cut(s)	284
BmsI	GCATC	2 cut(s)	535, 784
BpmI	CTGGAG	2 cut(s)	585, 748
Bpu10I	CCTNAGC	1 cut(s)	989
Bpu1102I	GCTNAGC	2 cut(s)	765, 861
BsaJI	CCNNGG	2 cut(s)	188, 894
Bse1I	ACTGG	2 cut(s)	108, 255
Bse21I	CCTNAGG	1 cut(s)	275
BseBI	CCWGG	1 cut(s)	284
BseDI	CCNNGG	2 cut(s)	188, 894
BseGI	GGATG	3 cut(s)	466, 496, 523
BseMII	CTCAG	6 cut(s)	75, 139, 153, 779, 804, 980
BseNI	ACTGG	2 cut(s)	108, 255
BseRI	GAGGAG	2 cut(s)	536, 914
BseXI	GCAGC	6 cut(s)	254, 367, 395, 408, 766, 946
BsgI	GTGCAG	1 cut(s)	30
BshFI	GGCC	3 cut(s)	187, 395, 987
BshNI	GGYRCC	1 cut(s)	106
BsiHKAI	GWGCWC	1 cut(s)	791
BsmI	GAATGC	1 cut(s)	809
BsnI	GGCC	3 cut(s)	187, 395, 987
Bsp1286I	GDGCHC	1 cut(s)	791
Bsp143I	GATC	6 cut(s)	14, 128, 180, 436, 560, 853
Bsp1720I	GCTNAGC	2 cut(s)	765, 861
Bsp19I	CCATGG	1 cut(s)	188
BspACI	CCGC	1 cut(s)	473
BspANI	GGCC	3 cut(s)	187, 395, 987
BspCNI	CTCAG	6 cut(s)	76, 138, 154, 778, 803, 981
BspLI	GGNNCC	3 cut(s)	108, 281, 678
BspMAI	CTGCAG	1 cut(s)	385
BspPI	GGATC	4 cut(s)	22, 444, 568, 848
BspT107I	GGYRCC	1 cut(s)	106
BsrI	ACTGG	2 cut(s)	108, 255
BssECI	CCNNGG	2 cut(s)	188, 894
BssMI	GATC	6 cut(s)	14, 128, 180, 436, 560, 853
BssT1I	CCWWGG	2 cut(s)	188, 894
Bst2UI	CCWGG	1 cut(s)	284
Bst6I	CTCTTC	2 cut(s)	53, 498
BstC8I	GCNNGC	2 cut(s)	397, 909
BstDEI	CTNAG	9 cut(s)	84, 125, 162, 275, 641, 765, 790, 861, 989
BstDSI	CCRYGG	1 cut(s)	188
BstF5I	GGATG	3 cut(s)	466, 496, 523
BstKTI	GATC	6 cut(s)	17, 131, 183, 439, 563, 856
BstMBI	GATC	6 cut(s)	14, 128, 180, 436, 560, 853
BstMWI	GCNNNNNNNGC	5 cut(s)	89, 392, 959, 1040, 1049
BstNI	CCWGG	1 cut(s)	284
BstNSI	RCATGY	1 cut(s)	116
BstSCI	CCNGG	1 cut(s)	282
BstSFI	CTRYAG	2 cut(s)	53, 381
BstV1I	GCAGC	6 cut(s)	254, 367, 395, 408, 766, 946
BstX2I	RGATCY	3 cut(s)	180, 560, 853
BstXI	CCANNNNNNTGG	1 cut(s)	290
BstYI	RGATCY	3 cut(s)	180, 560, 853
Bsu36I	CCTNAGG	1 cut(s)	275
BsuRI	GGCC	3 cut(s)	187, 395, 987
BtgI	CCRYGG	1 cut(s)	188
BtgZI	GCGATG	1 cut(s)	284
BtsCI	GGATG	3 cut(s)	466, 496, 523
BtsIMutI	CAGTG	2 cut(s)	82, 366
Cac8I	GCNNGC	2 cut(s)	397, 909
CaiI	CAGNNNCTG	1 cut(s)	161
Cfr13I	GGNCC	2 cut(s)	28, 677
CseI	GACGC	1 cut(s)	635
Csp6I	GTAC	3 cut(s)	107, 389, 946
CspCI	CAANNNNNGTGG	2 cut(s)	538, 573
CviAII	CATG	7 cut(s)	113, 189, 238, 264, 401, 875, 949
CviQI	GTAC	3 cut(s)	107, 389, 946
DdeI	CTNAG	9 cut(s)	84, 125, 162, 275, 641, 765, 790, 861, 989
DpnI	GATC	6 cut(s)	16, 130, 182, 438, 562, 855
DpnII	GATC	6 cut(s)	14, 128, 180, 436, 560, 853
EaeI	YGGCCR	1 cut(s)	185
Eam1104I	CTCTTC	2 cut(s)	53, 498
EarI	CTCTTC	2 cut(s)	53, 498
Ecl136II	GAGCTC	1 cut(s)	789
Eco130I	CCWWGG	2 cut(s)	188, 894
Eco147I	AGGCCT	2 cut(s)	395, 987
Eco24I	GRGCYC	1 cut(s)	791
Eco47I	GGWCC	2 cut(s)	28, 677
Eco53kI	GAGCTC	1 cut(s)	789
Eco57I	CTGAAG	1 cut(s)	651
Eco81I	CCTNAGG	1 cut(s)	275
EcoICRI	GAGCTC	1 cut(s)	789
EcoO109I	RGGNCCY	1 cut(s)	677
EcoRII	CCWGG	1 cut(s)	282
EcoT14I	CCWWGG	2 cut(s)	188, 894
EcoT22I	ATGCAT	1 cut(s)	269
EcoT38I	GRGCYC	1 cut(s)	791
ErhI	CCWWGG	2 cut(s)	188, 894
FaeI	CATG	7 cut(s)	116, 192, 241, 267, 404, 878, 952
FalI	AAGNNNNNCTT	2 cut(s)	624, 656
FatI	CATG	7 cut(s)	112, 188, 237, 263, 400, 874, 948
Fnu4HI	GCNGC	6 cut(s)	243, 381, 384, 422, 755, 960
FokI	GGATG	3 cut(s)	473, 503, 530
FriOI	GRGCYC	1 cut(s)	791
Fsp4HI	GCNGC	6 cut(s)	243, 381, 384, 422, 755, 960
FspBI	CTAG	1 cut(s)	98
GluI	GCNGC	6 cut(s)	243, 381, 384, 422, 755, 960
GsuI	CTGGAG	2 cut(s)	585, 748
HaeIII	GGCC	3 cut(s)	187, 395, 987
HgaI	GACGC	1 cut(s)	635
Hin1II	CATG	7 cut(s)	116, 192, 241, 267, 404, 878, 952
HincII	GTYRAC	1 cut(s)	804
HindII	GTYRAC	1 cut(s)	804
HindIII	AAGCTT	1 cut(s)	863
HinfI	GANTC	3 cut(s)	194, 692, 817
HphI	GGTGA	2 cut(s)	155, 464
Hpy166II	GTNNAC	1 cut(s)	804
Hpy188I	TCNGA	5 cut(s)	128, 163, 691, 793, 829
Hpy188III	TCNNGA	7 cut(s)	26, 440, 564, 727, 814, 981, 1059
Hpy8I	GTNNAC	1 cut(s)	804
HpyAV	CCTTC	4 cut(s)	41, 427, 997, 1009
HpyCH4V	TGCA	4 cut(s)	11, 267, 383, 1034
HpyF10VI	GCNNNNNNNGC	5 cut(s)	89, 392, 959, 1040, 1049
HpyF3I	CTNAG	9 cut(s)	84, 125, 162, 275, 641, 765, 790, 861, 989
Hsp92II	CATG	7 cut(s)	116, 192, 241, 267, 404, 878, 952
KpnI	GGTACC	1 cut(s)	110
Kzo9I	GATC	6 cut(s)	14, 128, 180, 436, 560, 853
LmnI	GCTCC	2 cut(s)	279, 688
Lsp1109I	GCAGC	6 cut(s)	254, 367, 395, 408, 766, 946
LweI	GCATC	2 cut(s)	535, 784
MaeI	CTAG	1 cut(s)	98
MaeIII	GTNAC	1 cut(s)	364
MalI	GATC	6 cut(s)	16, 130, 182, 438, 562, 855
MboI	GATC	6 cut(s)	14, 128, 180, 436, 560, 853
MboII	GAAGA	6 cut(s)	70, 494, 515, 539, 897, 985
MflI	RGATCY	3 cut(s)	180, 560, 853
MhlI	GDGCHC	1 cut(s)	791
MlsI	TGGCCA	1 cut(s)	187
MluCI	AATT	5 cut(s)	371, 530, 596, 740, 833
MluNI	TGGCCA	1 cut(s)	187
MlyI	GAGTC	1 cut(s)	686
Mox20I	TGGCCA	1 cut(s)	187
Mph1103I	ATGCAT	1 cut(s)	269
MscI	TGGCCA	1 cut(s)	187
MseI	TTAA	8 cut(s)	177, 411, 429, 621, 735, 743, 836, 843
MslI	CAYNNNNRTG	1 cut(s)	357
Msp20I	TGGCCA	1 cut(s)	187
MspR9I	CCNGG	1 cut(s)	284
Mva1269I	GAATGC	1 cut(s)	809
MvaI	CCWGG	1 cut(s)	284
MwoI	GCNNNNNNNGC	5 cut(s)	89, 392, 959, 1040, 1049
NcoI	CCATGG	1 cut(s)	188
NdeII	GATC	6 cut(s)	14, 128, 180, 436, 560, 853
NlaIII	CATG	7 cut(s)	116, 192, 241, 267, 404, 878, 952
NlaIV	GGNNCC	3 cut(s)	108, 281, 678
NmuCI	GTSAC	1 cut(s)	364
NsiI	ATGCAT	1 cut(s)	269
NspI	RCATGY	1 cut(s)	116
PceI	AGGCCT	2 cut(s)	395, 987
PciI	ACATGT	1 cut(s)	112
PctI	GAATGC	1 cut(s)	809
PfeI	GAWTC	2 cut(s)	194, 817
PkrI	GCNGC	6 cut(s)	244, 382, 385, 423, 756, 961
PleI	GAGTC	1 cut(s)	686
PpsI	GAGTC	1 cut(s)	686
PpuMI	RGGWCCY	1 cut(s)	677
PscI	ACATGT	1 cut(s)	112
Psp124BI	GAGCTC	1 cut(s)	791
Psp5II	RGGWCCY	1 cut(s)	677
Psp6I	CCWGG	1 cut(s)	282
PspGI	CCWGG	1 cut(s)	282
PspN4I	GGNNCC	3 cut(s)	108, 281, 678
PspPI	GGNCC	2 cut(s)	28, 677
PspPPI	RGGWCCY	1 cut(s)	677
PstI	CTGCAG	1 cut(s)	385
PstNI	CAGNNNCTG	1 cut(s)	161
PsuI	RGATCY	3 cut(s)	180, 560, 853
RsaI	GTAC	3 cut(s)	108, 390, 947
RsaNI	GTAC	3 cut(s)	107, 389, 946
RseI	CAYNNNNRTG	1 cut(s)	357
SacI	GAGCTC	1 cut(s)	791
SaqAI	TTAA	8 cut(s)	177, 411, 429, 621, 735, 743, 836, 843
SatI	GCNGC	6 cut(s)	243, 381, 384, 422, 755, 960
Sau3AI	GATC	6 cut(s)	14, 128, 180, 436, 560, 853
Sau96I	GGNCC	2 cut(s)	28, 677
SchI	GAGTC	1 cut(s)	686
ScrFI	CCNGG	1 cut(s)	284
SduI	GDGCHC	1 cut(s)	791
SfaNI	GCATC	2 cut(s)	535, 784
SfcI	CTRYAG	2 cut(s)	53, 381
SinI	GGWCC	2 cut(s)	28, 677
SmiMI	CAYNNNNRTG	1 cut(s)	357
Sse9I	AATT	5 cut(s)	371, 530, 596, 740, 833
SseBI	AGGCCT	2 cut(s)	395, 987
SsiI	CCGC	1 cut(s)	473
SspMI	CTAG	1 cut(s)	98
SstI	GAGCTC	1 cut(s)	791
StuI	AGGCCT	2 cut(s)	395, 987
StyD4I	CCNGG	1 cut(s)	282
StyI	CCWWGG	2 cut(s)	188, 894
TaqI	TCGA	1 cut(s)	695
TasI	AATT	5 cut(s)	371, 530, 596, 740, 833
TatI	WGTACW	2 cut(s)	388, 945
TfiI	GAWTC	2 cut(s)	194, 817
Tru1I	TTAA	8 cut(s)	177, 411, 429, 621, 735, 743, 836, 843
Tru9I	TTAA	8 cut(s)	177, 411, 429, 621, 735, 743, 836, 843
TscAI	CASTG	2 cut(s)	82, 373
TseFI	GTSAC	1 cut(s)	364
TseI	GCWGC	6 cut(s)	242, 380, 383, 421, 754, 959
Tsp45I	GTSAC	1 cut(s)	364
TspDTI	ATGAA	6 cut(s)	23, 36, 287, 495, 516, 846
TspGWI	ACGGA	1 cut(s)	985
TspRI	CASTG	2 cut(s)	82, 373
VpaK11BI	GGWCC	2 cut(s)	28, 677
XapI	RAATTY	2 cut(s)	530, 596
XceI	RCATGY	1 cut(s)	116
XcmI	CCANNNNNNNNNTGG	1 cut(s)	670
XspI	CTAG	1 cut(s)	98
Zsp2I	ATGCAT	1 cut(s)	269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.