Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0015115

Physical Location & Seq

Genomic Coordinates Forward (+)

47030980 .. 47032670

Gene Structure 1691 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG372500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGAGAAAGGAAAAATGGGAGGCAGGCCCCCAGAAATAAGGAAGGACTGGGTGACAAACCGGTGGGTGATATTCTCACCGGCCAGAGCCAAGCGACCTTCGGACTTCAAATCCAAATCACCGGCGACGGCAACCCAACAACAACAACAACAATATCAACAATCTTGTCCCTTTTGTCTCGGCAACGAGCACGACTGCGCTCCGGAAATCTTCCGGGTTCCGCCCGACGACCCCGAATGGAAACTCCGAGTGATCCAGAACATGTACCCGGCGCTGAGCCGTGCCCAGGAGGAATCCTCCTCCTCCTCCTCCTTGGGTCAGGTCATGACTGGGTTCGGGTTCCACGACGTGGTGATTGAGACCCCGCTTCACTCTCTTCAGCTCTCCGATCTTTCCCCAACTCAGATCGCCCATGTTCTTCGGGCCTATACCACCAGGATCCACCACTTGATCACTAATCATTCCATCAAATACGTTCAGGTGTTCAAAAACCATGGTGCTTCAGCTGGGGCATCAATGAGTCACTCTCACAGTCAGATGATGGCTCTGCCTATTGTTCCTCCTGCTGTTGCTGCTCGACTTGACTCTATGAAAGACTATTTTAATCGGACTGGCAAATGTAGTGTTTGTGAATTCAACTCGAACGATCTTTTGATCCATGCATCACCCCATTTTATTTCAATTGTACCTTATGCTGCTACATTTCCCTTCGAGATATGGATCATTCCTCTCACTCACTCTCCTCATTTCCATGAACTTGATGCTGACAAGGCAGTTGACCTTGGGGGGATCCTGAAACTCATGCTTCGGAAGATGGCTTTACAGTTGAATAATCCACCATTTAATTTCATGATTCAGACTTCTCCTCTTCAGGATGGTGCTTCAGACTTACCTCACTCCCATTGGTTCTTGCAAATAATACCCCAGTTAAGTGTTGCAGCTGGTTTTGAAATTGGAACTGGCTGCTACATAAATCCAGTCTTCCCAGAGGATGCAGCAAAAGTTTTGAGGGAAGTAAATGTTTTACCTTTGGAAGGAGATGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005975 GO:0008150 GO:0008152 GO:0008270 GO:0010646 GO:0010647 GO:0016740 GO:0016772 GO:0016779 GO:0017076 GO:0030554 GO:0032101 GO:0032103 GO:0032104 GO:0032106 GO:0032107 GO:0032109 GO:0032553 GO:0032555 GO:0032559 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043531 GO:0044238 GO:0046872 GO:0046914 GO:0047345 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0065007 GO:0070566 GO:0071704 GO:0080040 GO:0080134 GO:0080135 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00052 ko00520 ko01100 ko04917 map00052 map00520 map01100 map04917

Pfam Domains

Protein Families

GalP_UDP_tr_C GalP_UDP_transf

Protein Analysis

348

Amino Acids

38.87

Weight (kDa)

6.49

Isoelectric Point (pI)

54.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GalP_UDP_transf	PF01087	14 - 187	3.6e-18	Galactose-1-phosphate uridyl transferase, N-terminal domain
DUF4921	PF16268	145 - 332	2.4e-09	Domain of unknown function (DUF4921)
GalP_UDP_tr_C	PF02744	197 - 338	7.8e-07	Galactose-1-phosphate uridyl transferase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015115)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18200
fragaria_vesca	FvH4_1g28080
malus_domestica	MD12G1003100.v1.1
prunus_persica	Prupe.7G003700_v2.0.a1
pyrus_communis	pycom12g00280
rosa_chinensis	RchiOBHm_Chr3g0497171
rosa_laevigata	RLG00000022474
rosa_multiflora	Rmu_sc0002893.1_g000014 Rmu_sc0007568.1_g000003
rosa_roxburghii	Rroxscaffold_6G00388310
rosa_rugosa	Rorug03G0291500
rosa_samantha	Rh3AG334800 Rh3BG372500 Rh3CG368900 Rh3DG369800
rosa_wichuraiana	Rw3G029430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	349
AccIII	TCCGGA	1 cut(s)	202
AciI	CCGC	2 cut(s)	221, 365
AclWI	GGATC	7 cut(s)	247, 433, 446, 649, 728, 784, 797
AcoI	YGGCCR	1 cut(s)	81
AcsI	RAATTY	1 cut(s)	632
AcuI	CTGAAG	4 cut(s)	362, 486, 854, 867
AdeI	CACNNNGTG	1 cut(s)	349
AfaI	GTAC	2 cut(s)	266, 687
AfiI	CCNNNNNNNGG	3 cut(s)	286, 349, 1034
AflIII	ACRYGT	1 cut(s)	261
AgeI	ACCGGT	1 cut(s)	60
AgsI	TTSAA	6 cut(s)	109, 487, 637, 681, 829, 950
AjiI	CACGTC	1 cut(s)	349
AjnI	CCWGG	2 cut(s)	285, 434
AluBI	AGCT	3 cut(s)	382, 506, 941
AluI	AGCT	3 cut(s)	382, 506, 941
Alw21I	GWGCWC	1 cut(s)	192
Alw26I	GTCTC	2 cut(s)	182, 353
AlwI	GGATC	7 cut(s)	247, 433, 446, 649, 728, 784, 797
Aor13HI	TCCGGA	1 cut(s)	202
AoxI	GGCC	3 cut(s)	26, 81, 423
ApeKI	GCWGC	5 cut(s)	572, 695, 938, 963, 995
ApoI	RAATTY	1 cut(s)	632
AsiGI	ACCGGT	1 cut(s)	60
AspLEI	GCGC	2 cut(s)	200, 274
AspS9I	GGNCC	2 cut(s)	27, 423
AsuC2I	CCSGG	2 cut(s)	215, 269
AsuHPI	GGTGA	6 cut(s)	64, 69, 79, 111, 364, 657
BaeGI	GKGCMC	1 cut(s)	286
BamHI	GGATCC	2 cut(s)	438, 789
BbsI	GAAGAC	1 cut(s)	973
Bbv12I	GWGCWC	1 cut(s)	192
BbvI	GCAGC	5 cut(s)	559, 682, 950, 950, 1007
BccI	CCATC	4 cut(s)	473, 535, 808, 869
BceAI	ACGGC	2 cut(s)	144, 264
BciT130I	CCWGG	2 cut(s)	287, 436
BclI	TGATCA	1 cut(s)	450
BcnI	CCSGG	2 cut(s)	215, 269
BcoDI	GTCTC	2 cut(s)	182, 353
BfoI	RGCGCY	1 cut(s)	275
BisI	GCNGC	5 cut(s)	573, 696, 939, 964, 996
BlpI	GCTNAGC	1 cut(s)	275
BlsI	GCNGC	5 cut(s)	574, 697, 940, 965, 997
Bme1390I	CCNGG	4 cut(s)	215, 269, 287, 436
BmgBI	CACGTC	1 cut(s)	349
BmgT120I	GGNCC	2 cut(s)	27, 423
BmiI	GGNNCC	5 cut(s)	29, 219, 341, 440, 791
BmrFI	CCNGG	4 cut(s)	215, 269, 287, 436
BmrI	ACTGGG	3 cut(s)	58, 339, 919
BmsI	GCATC	4 cut(s)	521, 671, 751, 982
BmuI	ACTGGG	3 cut(s)	58, 339, 919
BpiI	GAAGAC	1 cut(s)	973
BplI	GAGNNNNNCTC	4 cut(s)	281, 313, 511, 543
Bpu1102I	GCTNAGC	1 cut(s)	275
BpuMI	CCSGG	2 cut(s)	215, 269
BsaBI	GATNNNNATC	1 cut(s)	719
BsaI	GGTCTC	1 cut(s)	353
BsaJI	CCNNGG	4 cut(s)	285, 312, 493, 781
BsaWI	WCCGGW	2 cut(s)	60, 202
BsaXI	ACNNNNNCTCC	2 cut(s)	724, 754
Bsc4I	CCNNNNNNNGG	3 cut(s)	286, 349, 1034
Bse118I	RCCGGY	3 cut(s)	60, 79, 121
Bse1I	ACTGG	6 cut(s)	53, 334, 616, 925, 964, 977
Bse8I	GATNNNNATC	1 cut(s)	719
BseAI	TCCGGA	1 cut(s)	202
BseBI	CCWGG	2 cut(s)	287, 436
BseDI	CCNNGG	4 cut(s)	285, 312, 493, 781
BseGI	GGATG	2 cut(s)	880, 997
BseJI	GATNNNNATC	1 cut(s)	719
BseLI	CCNNNNNNNGG	3 cut(s)	286, 349, 1034
BseMII	CTCAG	2 cut(s)	266, 416
BseNI	ACTGG	6 cut(s)	53, 334, 616, 925, 964, 977
BseRI	GAGGAG	6 cut(s)	289, 292, 295, 298, 732, 855
BseSI	GKGCMC	1 cut(s)	286
BseXI	GCAGC	5 cut(s)	559, 682, 950, 950, 1007
BseYI	CCCAGC	1 cut(s)	506
BshFI	GGCC	3 cut(s)	28, 83, 425
BshTI	ACCGGT	1 cut(s)	60
BsiHKAI	GWGCWC	1 cut(s)	192
BsiSI	CCGG	6 cut(s)	61, 80, 122, 203, 214, 269
BslFI	GGGAC	1 cut(s)	153
BslI	CCNNNNNNNGG	3 cut(s)	286, 349, 1034
BsmAI	GTCTC	2 cut(s)	182, 353
BsmFI	GGGAC	1 cut(s)	153
BsnI	GGCC	3 cut(s)	28, 83, 425
Bso31I	GGTCTC	1 cut(s)	353
Bsp1286I	GDGCHC	2 cut(s)	192, 286
Bsp13I	TCCGGA	1 cut(s)	202
Bsp143I	GATC	9 cut(s)	252, 388, 405, 438, 450, 646, 654, 720, 789
Bsp1720I	GCTNAGC	1 cut(s)	275
Bsp19I	CCATGG	1 cut(s)	493
BspACI	CCGC	2 cut(s)	221, 365
BspANI	GGCC	3 cut(s)	28, 83, 425
BspCNI	CTCAG	2 cut(s)	267, 415
BspEI	TCCGGA	1 cut(s)	202
BspHI	TCATGA	2 cut(s)	324, 849
BspLI	GGNNCC	5 cut(s)	29, 219, 341, 440, 791
BspPI	GGATC	7 cut(s)	247, 433, 446, 649, 728, 784, 797
BspTNI	GGTCTC	1 cut(s)	353
BsrFI	RCCGGY	3 cut(s)	60, 79, 121
BsrI	ACTGG	6 cut(s)	53, 334, 616, 925, 964, 977
BssAI	RCCGGY	3 cut(s)	60, 79, 121
BssECI	CCNNGG	4 cut(s)	285, 312, 493, 781
BssMI	GATC	9 cut(s)	252, 388, 405, 438, 450, 646, 654, 720, 789
BssT1I	CCWWGG	3 cut(s)	312, 493, 781
Bst2UI	CCWGG	2 cut(s)	287, 436
Bst4CI	ACNGT	2 cut(s)	533, 825
Bst6I	CTCTTC	2 cut(s)	381, 873
BstC8I	GCNNGC	1 cut(s)	26
BstDEI	CTNAG	2 cut(s)	275, 402
BstDSI	CCRYGG	1 cut(s)	493
BstENI	CCTNNNNNAGG	1 cut(s)	1032
BstF5I	GGATG	2 cut(s)	880, 997
BstH2I	RGCGCY	1 cut(s)	275
BstHHI	GCGC	2 cut(s)	200, 274
BstKTI	GATC	9 cut(s)	255, 391, 408, 441, 453, 649, 657, 723, 792
BstMAI	GTCTC	2 cut(s)	182, 353
BstMBI	GATC	9 cut(s)	252, 388, 405, 438, 450, 646, 654, 720, 789
BstMWI	GCNNNNNNNGC	2 cut(s)	572, 770
BstNI	CCWGG	2 cut(s)	287, 436
BstNSI	RCATGY	1 cut(s)	265
BstSCI	CCNGG	4 cut(s)	213, 267, 285, 434
BstSLI	GKGCMC	1 cut(s)	286
BstV1I	GCAGC	5 cut(s)	559, 682, 950, 950, 1007
BstV2I	GAAGAC	1 cut(s)	973
BstX2I	RGATCY	2 cut(s)	438, 789
BstYI	RGATCY	2 cut(s)	438, 789
BsuRI	GGCC	3 cut(s)	28, 83, 425
BtgI	CCRYGG	1 cut(s)	493
BtrI	CACGTC	1 cut(s)	349
BtsCI	GGATG	2 cut(s)	880, 997
Cac8I	GCNNGC	1 cut(s)	26
CciI	TCATGA	2 cut(s)	324, 849
CfoI	GCGC	2 cut(s)	200, 274
Cfr10I	RCCGGY	3 cut(s)	60, 79, 121
Cfr13I	GGNCC	2 cut(s)	27, 423
Csp6I	GTAC	2 cut(s)	265, 686
CspAI	ACCGGT	1 cut(s)	60
CviAII	CATG	8 cut(s)	262, 325, 413, 494, 659, 752, 802, 850
CviQI	GTAC	2 cut(s)	265, 686
DdeI	CTNAG	2 cut(s)	275, 402
DpnI	GATC	9 cut(s)	254, 390, 407, 440, 452, 648, 656, 722, 791
DpnII	GATC	9 cut(s)	252, 388, 405, 438, 450, 646, 654, 720, 789
DraIII	CACNNNGTG	1 cut(s)	349
EaeI	YGGCCR	1 cut(s)	81
Eam1104I	CTCTTC	2 cut(s)	381, 873
EarI	CTCTTC	2 cut(s)	381, 873
EciI	GGCGGA	1 cut(s)	210
Eco130I	CCWWGG	3 cut(s)	312, 493, 781
Eco31I	GGTCTC	1 cut(s)	353
Eco57I	CTGAAG	4 cut(s)	362, 486, 854, 867
EcoNI	CCTNNNNNAGG	1 cut(s)	1032
EcoO109I	RGGNCCY	1 cut(s)	27
EcoRI	GAATTC	1 cut(s)	632
EcoRII	CCWGG	2 cut(s)	285, 434
EcoT14I	CCWWGG	3 cut(s)	312, 493, 781
EcoT22I	ATGCAT	1 cut(s)	664
ErhI	CCWWGG	3 cut(s)	312, 493, 781
FaeI	CATG	8 cut(s)	265, 328, 416, 497, 662, 755, 805, 853
FaqI	GGGAC	1 cut(s)	153
FatI	CATG	8 cut(s)	261, 324, 412, 493, 658, 751, 801, 849
FauI	CCCGC	1 cut(s)	372
FbaI	TGATCA	1 cut(s)	450
Fnu4HI	GCNGC	5 cut(s)	573, 696, 939, 964, 996
FokI	GGATG	2 cut(s)	887, 1004
Fsp4HI	GCNGC	5 cut(s)	573, 696, 939, 964, 996
GlaI	GCGC	2 cut(s)	199, 273
GluI	GCNGC	5 cut(s)	573, 696, 939, 964, 996
GsaI	CCCAGC	1 cut(s)	510
HaeII	RGCGCY	1 cut(s)	275
HaeIII	GGCC	3 cut(s)	28, 83, 425
HapII	CCGG	6 cut(s)	61, 80, 122, 203, 214, 269
HhaI	GCGC	2 cut(s)	200, 274
Hin1II	CATG	8 cut(s)	265, 328, 416, 497, 662, 755, 805, 853
Hin6I	GCGC	2 cut(s)	198, 272
HinP1I	GCGC	2 cut(s)	198, 272
HincII	GTYRAC	1 cut(s)	778
HindII	GTYRAC	1 cut(s)	778
HinfI	GANTC	4 cut(s)	293, 520, 584, 853
HpaII	CCGG	6 cut(s)	61, 80, 122, 203, 214, 269
HphI	GGTGA	6 cut(s)	64, 69, 79, 111, 364, 657
Hpy166II	GTNNAC	1 cut(s)	778
Hpy188I	TCNGA	9 cut(s)	103, 248, 388, 405, 537, 609, 810, 858, 886
Hpy188III	TCNNGA	7 cut(s)	203, 256, 325, 712, 793, 850, 872
Hpy8I	GTNNAC	1 cut(s)	778
Hpy99I	CGWCG	3 cut(s)	130, 230, 350
HpyAV	CCTTC	4 cut(s)	37, 108, 718, 1028
HpyCH4III	ACNGT	2 cut(s)	533, 825
HpyCH4IV	ACGT	2 cut(s)	348, 474
HpyCH4V	TGCA	4 cut(s)	662, 913, 938, 995
HpyF10VI	GCNNNNNNNGC	2 cut(s)	572, 770
HpyF3I	CTNAG	2 cut(s)	275, 402
HpySE526I	ACGT	2 cut(s)	348, 474
Hsp92II	CATG	8 cut(s)	265, 328, 416, 497, 662, 755, 805, 853
HspAI	GCGC	2 cut(s)	198, 272
Kpn2I	TCCGGA	1 cut(s)	202
Ksp22I	TGATCA	1 cut(s)	450
Kzo9I	GATC	9 cut(s)	252, 388, 405, 438, 450, 646, 654, 720, 789
LmnI	GCTCC	1 cut(s)	205
Lsp1109I	GCAGC	5 cut(s)	559, 682, 950, 950, 1007
LweI	GCATC	4 cut(s)	521, 671, 751, 982
MaeII	ACGT	2 cut(s)	348, 474
MaeIII	GTNAC	2 cut(s)	52, 521
MalI	GATC	9 cut(s)	254, 390, 407, 440, 452, 648, 656, 722, 791
MboI	GATC	9 cut(s)	252, 388, 405, 438, 450, 646, 654, 720, 789
MboII	GAAGA	6 cut(s)	202, 368, 410, 823, 860, 973
MfeI	CAATTG	1 cut(s)	681
MflI	RGATCY	2 cut(s)	438, 789
MhlI	GDGCHC	2 cut(s)	192, 286
MluCI	AATT	4 cut(s)	632, 681, 844, 951
MlyI	GAGTC	2 cut(s)	529, 578
Mph1103I	ATGCAT	1 cut(s)	664
MroI	TCCGGA	1 cut(s)	202
MseI	TTAA	4 cut(s)	603, 843, 929, 1045
MslI	CAYNNNNRTG	1 cut(s)	750
MspA1I	CMGCKG	2 cut(s)	506, 941
MspI	CCGG	6 cut(s)	61, 80, 122, 203, 214, 269
MspR9I	CCNGG	4 cut(s)	215, 269, 287, 436
MunI	CAATTG	1 cut(s)	681
MvaI	CCWGG	2 cut(s)	287, 436
MwoI	GCNNNNNNNGC	2 cut(s)	572, 770
NciI	CCSGG	2 cut(s)	215, 269
NcoI	CCATGG	1 cut(s)	493
NdeII	GATC	9 cut(s)	252, 388, 405, 438, 450, 646, 654, 720, 789
NlaIII	CATG	8 cut(s)	265, 328, 416, 497, 662, 755, 805, 853
NlaIV	GGNNCC	5 cut(s)	29, 219, 341, 440, 791
NmeAIII	GCCGAG	1 cut(s)	159
NmuCI	GTSAC	2 cut(s)	52, 521
NsiI	ATGCAT	1 cut(s)	664
NspI	RCATGY	1 cut(s)	265
PagI	TCATGA	2 cut(s)	324, 849
PciI	ACATGT	1 cut(s)	261
PcsI	WCGNNNNNNNCGW	1 cut(s)	342
PfeI	GAWTC	2 cut(s)	293, 853
PflMI	CCANNNNNTGG	1 cut(s)	349
PinAI	ACCGGT	1 cut(s)	60
PkrI	GCNGC	5 cut(s)	574, 697, 940, 965, 997
PleI	GAGTC	2 cut(s)	528, 578
PpsI	GAGTC	2 cut(s)	528, 578
PscI	ACATGT	1 cut(s)	261
Psp6I	CCWGG	2 cut(s)	285, 434
PspFI	CCCAGC	1 cut(s)	506
PspGI	CCWGG	2 cut(s)	285, 434
PspN4I	GGNNCC	5 cut(s)	29, 219, 341, 440, 791
PspPI	GGNCC	2 cut(s)	27, 423
PsuI	RGATCY	2 cut(s)	438, 789
PvuII	CAGCTG	2 cut(s)	506, 941
RsaI	GTAC	2 cut(s)	266, 687
RsaNI	GTAC	2 cut(s)	265, 686
RseI	CAYNNNNRTG	1 cut(s)	750
SaqAI	TTAA	4 cut(s)	603, 843, 929, 1045
SatI	GCNGC	5 cut(s)	573, 696, 939, 964, 996
Sau3AI	GATC	9 cut(s)	252, 388, 405, 438, 450, 646, 654, 720, 789
Sau96I	GGNCC	2 cut(s)	27, 423
SchI	GAGTC	2 cut(s)	529, 578
ScrFI	CCNGG	4 cut(s)	215, 269, 287, 436
SduI	GDGCHC	2 cut(s)	192, 286
SfaNI	GCATC	4 cut(s)	521, 671, 751, 982
SgrAI	CRCCGGYG	1 cut(s)	121
SmiMI	CAYNNNNRTG	1 cut(s)	750
Sse9I	AATT	4 cut(s)	632, 681, 844, 951
SsiI	CCGC	2 cut(s)	221, 365
StyD4I	CCNGG	4 cut(s)	213, 267, 285, 434
StyI	CCWWGG	3 cut(s)	312, 493, 781
TaaI	ACNGT	2 cut(s)	533, 825
TaiI	ACGT	2 cut(s)	351, 477
TaqI	TCGA	3 cut(s)	577, 641, 711
TasI	AATT	4 cut(s)	632, 681, 844, 951
TfiI	GAWTC	2 cut(s)	293, 853
Tru1I	TTAA	4 cut(s)	603, 843, 929, 1045
Tru9I	TTAA	4 cut(s)	603, 843, 929, 1045
TseFI	GTSAC	2 cut(s)	52, 521
TseI	GCWGC	5 cut(s)	572, 695, 938, 963, 995
Tsp45I	GTSAC	2 cut(s)	52, 521
TspDTI	ATGAA	3 cut(s)	605, 768, 838
Van91I	CCANNNNNTGG	1 cut(s)	349
XagI	CCTNNNNNAGG	1 cut(s)	1032
XapI	RAATTY	1 cut(s)	632
XceI	RCATGY	1 cut(s)	265
Zsp2I	ATGCAT	1 cut(s)	664

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.