Rh3CG368900

galactose-1-phosphate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0015115
Physical Location & Seq
Forward (+)
46815699 .. 46817409
1711 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG368900.1

Sequence Viewer

Length: 1041 bp
ATGGGAGGCAGGCCCCCAGAAATAAGGAAGGACTGGGTGACAAACCGGTGGGTGATATTCTCACCGGCCAGAGCCAAGCGACCTTCGGACTTCAAATCCAAATCACCGGCGACGCCGCCAACCCAACAACAACAATATCAACAATCTTGTCCCTTTTGTCTCGGCAACGAGCACGACTGCGCTCCCGAAATCTTCCGGGTTCCGCCCGACGACCCCGAATGGAAACTCCGAGTGATCCAGAACATGTACCCGGCGCTGAGCCGTGCGGAGGTCCCCGTCCCTGCCCAGGAGGAATCCTCCTCCTCCTTGGGTCAGGTCATGACTGGGTTCGGGTTCCACGACGTGGTGATTGAGACCCCGCTTCACTCTCTTCACCTCTCCGATCTTTCCCCAACTCAGATCGCCCATGTTCTTCGGGCCTATACCACCAGGATCCACCACTTCGTCACTAATCATTCCATCAAATACGTTCAGGTGTTCAAAAACCATGGTGCTTCAGCTGGGGCATCAATGAGTCACTCTCACAGTCAGATGATGGCTCTGCCTATTGTTCCTCCTGCTGTTGCTGCTCGACTTGACTCTATGAAGGACTATTTTAATCGGACTGGCAAATGTAGTGTTTGTGAATTCAACTCGAACGATCTTTTGATCCATGCATCACCCCATTTTATTTCAATTGTACCTTATGCTGCTACATTTCCCTTCGAGATGTGGATCATTCCTCTCACTCACTCTCCTCATTTCCATGAACTTGATGCTGACAAGGCAGTTGACCTTGGGGGGATCCTGAAACTCATGCTTCGGAAGATGGCTTTACAGTTGAATAATCCTCCATTTAATTTCATGATTCAGACTTCTCCTCTTCAGGACGGTGCTTCAGAGTTACCTCACTCCCATTGGTTCTTGCAAATAATACCCCAGTTAAGTGTTGCAGCTGGTTTTGAAATTGGAACTGGCTGCTACATAAATCCAGTCTTCCCAGAGGATGCAGCAAAAGTTTTGAGGGAAGTAAATGTTTTACCTTTGGAAGGAGATGATTAA

Protein Analysis

346

Amino Acids

38.64

Weight (kDa)

6.3

Isoelectric Point (pI)

53.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GalP_UDP_transf PF01087 9 - 185 4.8e-18 Galactose-1-phosphate uridyl transferase, N-terminal domain
DUF4921 PF16268 147 - 330 8.4e-09 Domain of unknown function (DUF4921)
GalP_UDP_tr_C PF02744 196 - 336 1.4e-06 Galactose-1-phosphate uridyl transferase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015115)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G18200
fragaria_vesca FvH4_1g28080
malus_domestica MD12G1003100.v1.1
prunus_persica Prupe.7G003700_v2.0.a1
pyrus_communis pycom12g00280
rosa_chinensis RchiOBHm_Chr3g0497171
rosa_laevigata RLG00000022474
rosa_multiflora Rmu_sc0002893.1_g000014 Rmu_sc0007568.1_g000003
rosa_roxburghii Rroxscaffold_6G00388310
rosa_rugosa Rorug03G0291500
rosa_samantha Rh3AG334800 Rh3BG372500 Rh3CG368900 Rh3DG369800
rosa_wichuraiana Rw3G029430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 343
AciI CCGC 4 cut(s) 116, 203, 266, 359
AclWI GGATC 7 cut(s) 229, 427, 440, 643, 722, 778, 791
AcoI YGGCCR 1 cut(s) 66
AcsI RAATTY 1 cut(s) 626
AcuI CTGAAG 3 cut(s) 480, 848, 861
AcyI GRCGYC 1 cut(s) 113
AdeI CACNNNGTG 1 cut(s) 343
AfaI GTAC 2 cut(s) 248, 681
AfiI CCNNNNNNNGG 4 cut(s) 268, 286, 343, 1028
AflIII ACRYGT 1 cut(s) 243
AgeI ACCGGT 1 cut(s) 45
AgsI TTSAA 6 cut(s) 94, 481, 631, 675, 823, 944
AjiI CACGTC 1 cut(s) 343
AjnI CCWGG 2 cut(s) 285, 428
AluBI AGCT 2 cut(s) 500, 935
AluI AGCT 2 cut(s) 500, 935
Alw21I GWGCWC 1 cut(s) 174
Alw26I GTCTC 2 cut(s) 164, 347
AlwI GGATC 7 cut(s) 229, 427, 440, 643, 722, 778, 791
AoxI GGCC 3 cut(s) 11, 66, 417
ApeKI GCWGC 5 cut(s) 566, 689, 932, 957, 989
ApoI RAATTY 1 cut(s) 626
AsiGI ACCGGT 1 cut(s) 45
AspLEI GCGC 2 cut(s) 182, 256
AspS9I GGNCC 3 cut(s) 12, 271, 417
AsuC2I CCSGG 2 cut(s) 197, 251
AsuHPI GGTGA 7 cut(s) 49, 54, 64, 96, 358, 365, 651
AvaII GGWCC 1 cut(s) 271
BamHI GGATCC 2 cut(s) 432, 783
BbsI GAAGAC 1 cut(s) 967
Bbv12I GWGCWC 1 cut(s) 174
BbvI GCAGC 5 cut(s) 553, 676, 944, 944, 1001
BccI CCATC 3 cut(s) 467, 529, 802
BceAI ACGGC 1 cut(s) 246
BciT130I CCWGG 2 cut(s) 287, 430
BcnI CCSGG 2 cut(s) 197, 251
BcoDI GTCTC 2 cut(s) 164, 347
BfoI RGCGCY 1 cut(s) 257
BisI GCNGC 6 cut(s) 116, 567, 690, 933, 958, 990
BlpI GCTNAGC 1 cut(s) 257
BlsI GCNGC 6 cut(s) 117, 568, 691, 934, 959, 991
Bme1390I CCNGG 4 cut(s) 197, 251, 287, 430
Bme18I GGWCC 1 cut(s) 271
BmgBI CACGTC 1 cut(s) 343
BmgT120I GGNCC 3 cut(s) 12, 271, 417
BmiI GGNNCC 6 cut(s) 14, 201, 273, 335, 434, 785
BmrFI CCNGG 4 cut(s) 197, 251, 287, 430
BmrI ACTGGG 3 cut(s) 43, 333, 913
BmsI GCATC 4 cut(s) 515, 665, 745, 976
BmuI ACTGGG 3 cut(s) 43, 333, 913
BpiI GAAGAC 1 cut(s) 967
BplI GAGNNNNNCTC 4 cut(s) 281, 313, 505, 537
Bpu1102I GCTNAGC 1 cut(s) 257
BpuMI CCSGG 2 cut(s) 197, 251
BsaBI GATNNNNATC 1 cut(s) 713
BsaHI GRCGYC 1 cut(s) 113
BsaI GGTCTC 1 cut(s) 347
BsaJI CCNNGG 4 cut(s) 285, 306, 487, 775
BsaWI WCCGGW 1 cut(s) 45
BsaXI ACNNNNNCTCC 2 cut(s) 718, 748
Bsc4I CCNNNNNNNGG 4 cut(s) 268, 286, 343, 1028
Bse118I RCCGGY 3 cut(s) 45, 64, 106
Bse1I ACTGG 6 cut(s) 38, 328, 610, 919, 958, 971
Bse8I GATNNNNATC 1 cut(s) 713
BseBI CCWGG 2 cut(s) 287, 430
BseDI CCNNGG 4 cut(s) 285, 306, 487, 775
BseGI GGATG 1 cut(s) 991
BseJI GATNNNNATC 1 cut(s) 713
BseLI CCNNNNNNNGG 4 cut(s) 268, 286, 343, 1028
BseMII CTCAG 2 cut(s) 248, 410
BseNI ACTGG 6 cut(s) 38, 328, 610, 919, 958, 971
BseRI GAGGAG 4 cut(s) 289, 292, 726, 849
BseXI GCAGC 5 cut(s) 553, 676, 944, 944, 1001
BseYI CCCAGC 1 cut(s) 500
BshFI GGCC 3 cut(s) 13, 68, 419
BshTI ACCGGT 1 cut(s) 45
BsiHKAI GWGCWC 1 cut(s) 174
BsiSI CCGG 5 cut(s) 46, 65, 107, 196, 251
BslFI GGGAC 3 cut(s) 135, 257, 263
BslI CCNNNNNNNGG 4 cut(s) 268, 286, 343, 1028
BsmAI GTCTC 2 cut(s) 164, 347
BsmFI GGGAC 3 cut(s) 135, 257, 263
BsnI GGCC 3 cut(s) 13, 68, 419
Bso31I GGTCTC 1 cut(s) 347
Bsp1286I GDGCHC 1 cut(s) 174
Bsp143I GATC 8 cut(s) 234, 382, 399, 432, 640, 648, 714, 783
Bsp1720I GCTNAGC 1 cut(s) 257
Bsp19I CCATGG 1 cut(s) 487
BspACI CCGC 4 cut(s) 116, 203, 266, 359
BspANI GGCC 3 cut(s) 13, 68, 419
BspCNI CTCAG 2 cut(s) 249, 409
BspHI TCATGA 2 cut(s) 318, 843
BspLI GGNNCC 6 cut(s) 14, 201, 273, 335, 434, 785
BspPI GGATC 7 cut(s) 229, 427, 440, 643, 722, 778, 791
BspTNI GGTCTC 1 cut(s) 347
BsrFI RCCGGY 3 cut(s) 45, 64, 106
BsrI ACTGG 6 cut(s) 38, 328, 610, 919, 958, 971
BssAI RCCGGY 3 cut(s) 45, 64, 106
BssECI CCNNGG 4 cut(s) 285, 306, 487, 775
BssMI GATC 8 cut(s) 234, 382, 399, 432, 640, 648, 714, 783
BssNI GRCGYC 1 cut(s) 113
BssT1I CCWWGG 3 cut(s) 306, 487, 775
Bst2UI CCWGG 2 cut(s) 287, 430
Bst4CI ACNGT 3 cut(s) 527, 819, 872
Bst6I CTCTTC 2 cut(s) 375, 867
BstACI GRCGYC 1 cut(s) 113
BstC8I GCNNGC 1 cut(s) 11
BstDEI CTNAG 2 cut(s) 257, 396
BstDSI CCRYGG 1 cut(s) 487
BstENI CCTNNNNNAGG 1 cut(s) 1026
BstF5I GGATG 1 cut(s) 991
BstH2I RGCGCY 1 cut(s) 257
BstHHI GCGC 2 cut(s) 182, 256
BstKTI GATC 8 cut(s) 237, 385, 402, 435, 643, 651, 717, 786
BstMAI GTCTC 2 cut(s) 164, 347
BstMBI GATC 8 cut(s) 234, 382, 399, 432, 640, 648, 714, 783
BstMWI GCNNNNNNNGC 2 cut(s) 566, 764
BstNI CCWGG 2 cut(s) 287, 430
BstNSI RCATGY 1 cut(s) 247
BstSCI CCNGG 4 cut(s) 195, 249, 285, 428
BstV1I GCAGC 5 cut(s) 553, 676, 944, 944, 1001
BstV2I GAAGAC 1 cut(s) 967
BstX2I RGATCY 2 cut(s) 432, 783
BstYI RGATCY 2 cut(s) 432, 783
BsuRI GGCC 3 cut(s) 13, 68, 419
BtgI CCRYGG 1 cut(s) 487
BtrI CACGTC 1 cut(s) 343
BtsCI GGATG 1 cut(s) 991
Cac8I GCNNGC 1 cut(s) 11
CciI TCATGA 2 cut(s) 318, 843
CfoI GCGC 2 cut(s) 182, 256
Cfr10I RCCGGY 3 cut(s) 45, 64, 106
Cfr13I GGNCC 3 cut(s) 12, 271, 417
CseI GACGC 1 cut(s) 121
Csp6I GTAC 2 cut(s) 247, 680
CspAI ACCGGT 1 cut(s) 45
CviAII CATG 8 cut(s) 244, 319, 407, 488, 653, 746, 796, 844
CviQI GTAC 2 cut(s) 247, 680
DdeI CTNAG 2 cut(s) 257, 396
DpnI GATC 8 cut(s) 236, 384, 401, 434, 642, 650, 716, 785
DpnII GATC 8 cut(s) 234, 382, 399, 432, 640, 648, 714, 783
DraIII CACNNNGTG 1 cut(s) 343
EaeI YGGCCR 1 cut(s) 66
Eam1104I CTCTTC 2 cut(s) 375, 867
EarI CTCTTC 2 cut(s) 375, 867
EciI GGCGGA 1 cut(s) 192
Eco130I CCWWGG 3 cut(s) 306, 487, 775
Eco31I GGTCTC 1 cut(s) 347
Eco47I GGWCC 1 cut(s) 271
Eco57I CTGAAG 3 cut(s) 480, 848, 861
EcoNI CCTNNNNNAGG 1 cut(s) 1026
EcoO109I RGGNCCY 2 cut(s) 12, 271
EcoRI GAATTC 1 cut(s) 626
EcoRII CCWGG 2 cut(s) 285, 428
EcoT14I CCWWGG 3 cut(s) 306, 487, 775
EcoT22I ATGCAT 1 cut(s) 658
ErhI CCWWGG 3 cut(s) 306, 487, 775
FaeI CATG 8 cut(s) 247, 322, 410, 491, 656, 749, 799, 847
FaqI GGGAC 3 cut(s) 135, 257, 263
FatI CATG 8 cut(s) 243, 318, 406, 487, 652, 745, 795, 843
FauI CCCGC 1 cut(s) 366
Fnu4HI GCNGC 6 cut(s) 116, 567, 690, 933, 958, 990
FokI GGATG 1 cut(s) 998
Fsp4HI GCNGC 6 cut(s) 116, 567, 690, 933, 958, 990
GlaI GCGC 2 cut(s) 181, 255
GluI GCNGC 6 cut(s) 116, 567, 690, 933, 958, 990
GsaI CCCAGC 1 cut(s) 504
HaeII RGCGCY 1 cut(s) 257
HaeIII GGCC 3 cut(s) 13, 68, 419
HapII CCGG 5 cut(s) 46, 65, 107, 196, 251
HgaI GACGC 1 cut(s) 121
HhaI GCGC 2 cut(s) 182, 256
Hin1I GRCGYC 1 cut(s) 113
Hin1II CATG 8 cut(s) 247, 322, 410, 491, 656, 749, 799, 847
Hin6I GCGC 2 cut(s) 180, 254
HinP1I GCGC 2 cut(s) 180, 254
HincII GTYRAC 1 cut(s) 772
HindII GTYRAC 1 cut(s) 772
HinfI GANTC 4 cut(s) 293, 514, 578, 847
HpaII CCGG 5 cut(s) 46, 65, 107, 196, 251
HphI GGTGA 7 cut(s) 49, 54, 64, 96, 358, 365, 651
Hpy166II GTNNAC 1 cut(s) 772
Hpy188I TCNGA 9 cut(s) 88, 230, 382, 399, 531, 603, 804, 852, 880
Hpy188III TCNNGA 7 cut(s) 185, 238, 319, 706, 787, 844, 866
Hpy8I GTNNAC 1 cut(s) 772
Hpy99I CGWCG 3 cut(s) 115, 212, 344
HpyAV CCTTC 5 cut(s) 22, 93, 580, 712, 1022
HpyCH4III ACNGT 3 cut(s) 527, 819, 872
HpyCH4IV ACGT 2 cut(s) 342, 468
HpyCH4V TGCA 4 cut(s) 656, 907, 932, 989
HpyF10VI GCNNNNNNNGC 2 cut(s) 566, 764
HpyF3I CTNAG 2 cut(s) 257, 396
HpySE526I ACGT 2 cut(s) 342, 468
Hsp92I GRCGYC 1 cut(s) 113
Hsp92II CATG 8 cut(s) 247, 322, 410, 491, 656, 749, 799, 847
HspAI GCGC 2 cut(s) 180, 254
Kzo9I GATC 8 cut(s) 234, 382, 399, 432, 640, 648, 714, 783
LmnI GCTCC 1 cut(s) 187
Lsp1109I GCAGC 5 cut(s) 553, 676, 944, 944, 1001
LweI GCATC 4 cut(s) 515, 665, 745, 976
MaeII ACGT 2 cut(s) 342, 468
MaeIII GTNAC 4 cut(s) 37, 445, 515, 882
MalI GATC 8 cut(s) 236, 384, 401, 434, 642, 650, 716, 785
MboI GATC 8 cut(s) 234, 382, 399, 432, 640, 648, 714, 783
MboII GAAGA 6 cut(s) 184, 362, 404, 817, 854, 967
MfeI CAATTG 1 cut(s) 675
MflI RGATCY 2 cut(s) 432, 783
MhlI GDGCHC 1 cut(s) 174
MluCI AATT 4 cut(s) 626, 675, 838, 945
MlyI GAGTC 2 cut(s) 523, 572
Mph1103I ATGCAT 1 cut(s) 658
MseI TTAA 4 cut(s) 597, 837, 923, 1039
MslI CAYNNNNRTG 1 cut(s) 744
MspA1I CMGCKG 2 cut(s) 500, 935
MspI CCGG 5 cut(s) 46, 65, 107, 196, 251
MspR9I CCNGG 4 cut(s) 197, 251, 287, 430
MunI CAATTG 1 cut(s) 675
MvaI CCWGG 2 cut(s) 287, 430
MwoI GCNNNNNNNGC 2 cut(s) 566, 764
NciI CCSGG 2 cut(s) 197, 251
NcoI CCATGG 1 cut(s) 487
NdeII GATC 8 cut(s) 234, 382, 399, 432, 640, 648, 714, 783
NlaIII CATG 8 cut(s) 247, 322, 410, 491, 656, 749, 799, 847
NlaIV GGNNCC 6 cut(s) 14, 201, 273, 335, 434, 785
NmeAIII GCCGAG 1 cut(s) 141
NmuCI GTSAC 3 cut(s) 37, 445, 515
NsiI ATGCAT 1 cut(s) 658
NspI RCATGY 1 cut(s) 247
PagI TCATGA 2 cut(s) 318, 843
PciI ACATGT 1 cut(s) 243
PcsI WCGNNNNNNNCGW 1 cut(s) 336
PfeI GAWTC 2 cut(s) 293, 847
PflMI CCANNNNNTGG 1 cut(s) 343
PinAI ACCGGT 1 cut(s) 45
PkrI GCNGC 6 cut(s) 117, 568, 691, 934, 959, 991
PleI GAGTC 2 cut(s) 522, 572
PpsI GAGTC 2 cut(s) 522, 572
PpuMI RGGWCCY 1 cut(s) 271
PscI ACATGT 1 cut(s) 243
Psp5II RGGWCCY 1 cut(s) 271
Psp6I CCWGG 2 cut(s) 285, 428
PspFI CCCAGC 1 cut(s) 500
PspGI CCWGG 2 cut(s) 285, 428
PspN4I GGNNCC 6 cut(s) 14, 201, 273, 335, 434, 785
PspPI GGNCC 3 cut(s) 12, 271, 417
PspPPI RGGWCCY 1 cut(s) 271
PsuI RGATCY 2 cut(s) 432, 783
PvuII CAGCTG 2 cut(s) 500, 935
RsaI GTAC 2 cut(s) 248, 681
RsaNI GTAC 2 cut(s) 247, 680
RseI CAYNNNNRTG 1 cut(s) 744
SaqAI TTAA 4 cut(s) 597, 837, 923, 1039
SatI GCNGC 6 cut(s) 116, 567, 690, 933, 958, 990
Sau3AI GATC 8 cut(s) 234, 382, 399, 432, 640, 648, 714, 783
Sau96I GGNCC 3 cut(s) 12, 271, 417
SchI GAGTC 2 cut(s) 523, 572
ScrFI CCNGG 4 cut(s) 197, 251, 287, 430
SduI GDGCHC 1 cut(s) 174
SfaNI GCATC 4 cut(s) 515, 665, 745, 976
SgrAI CRCCGGYG 1 cut(s) 106
SinI GGWCC 1 cut(s) 271
SmiMI CAYNNNNRTG 1 cut(s) 744
Sse9I AATT 4 cut(s) 626, 675, 838, 945
SsiI CCGC 4 cut(s) 116, 203, 266, 359
StyD4I CCNGG 4 cut(s) 195, 249, 285, 428
StyI CCWWGG 3 cut(s) 306, 487, 775
TaaI ACNGT 3 cut(s) 527, 819, 872
TaiI ACGT 2 cut(s) 345, 471
TaqI TCGA 3 cut(s) 571, 635, 705
TasI AATT 4 cut(s) 626, 675, 838, 945
TauI GCSGC 1 cut(s) 118
TfiI GAWTC 2 cut(s) 293, 847
Tru1I TTAA 4 cut(s) 597, 837, 923, 1039
Tru9I TTAA 4 cut(s) 597, 837, 923, 1039
TseFI GTSAC 3 cut(s) 37, 445, 515
TseI GCWGC 5 cut(s) 566, 689, 932, 957, 989
Tsp45I GTSAC 3 cut(s) 37, 445, 515
TspDTI ATGAA 3 cut(s) 599, 762, 832
Van91I CCANNNNNTGG 1 cut(s) 343
VpaK11BI GGWCC 1 cut(s) 271
XagI CCTNNNNNAGG 1 cut(s) 1026
XapI RAATTY 1 cut(s) 626
XceI RCATGY 1 cut(s) 247
Zsp2I ATGCAT 1 cut(s) 658
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.