AT5G18940

Mo25-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0009246
Physical Location & Seq
Forward (+)
6325534 .. 6328354
2821 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G18940.2

Sequence Viewer

Length: 1038 bp
ATGTCTTTCTCATTCTTCAAGCCCTCTAGGCCTAAAACGCCTCAAGAGGTTGTTAAAGCCATCAGAGACAGTCTTATGGCTCTCGACACCAAGACCGTCGTCGAAGTTAAAGCCCTCGAGAAGGCTTTGGAAGAAGTTGAGAAGAATTTTTCTTCTCTAAGAGGAATACTTTCTGGAGATGGTGAGACTGAACCAAATGCTGATCAGGCTGTACAGTTAGCATTAGAGTTTTGCAAAGAAGATGTTGTCTCTCTTGTTATTCATAAGCTTCATATTTTGGGATGGGAAACAAGAAAAGATTTACTGCATTGTTGGTCTATCCTGTTGAAGCAAAAGGTCGGCGACACTTATTGCTGTGTGCAATACTTTGAAGAGCATTTTGAGTTGCTTGACTCTTTAGTTGTATGCTATGACAATAAGGAGATTGCTCTGCATTGTGGAAGTATGCTTAGGGAATGCATTAAATTCCCAAGTCTTGCTAAGTACATATTAGAGTCTGCCTGCTTTGAGTTATTCTTCAAGTTCGTGGAATTGCCAAACTTTGATGTTGCTTCTGATGCATTTTCAACATTCAAGGATCTTCTTACAAAACATGACTCTGTAGTCTCTGAGTTTCTCACCTCTCATTACACTGAGTTCTTTGATGTTTATGAAAGACTTTTGACATCTTCAAATTATGTGACGAGAAGACAATCACTGAAGCTTCTCTCGGATTTCCTGTTGGAGCCTCCAAATTCCCACATAATGAAGAAATTCATCTTAGAAGTTCGTTATTTGAAAGTCATAATGACACTTTTGAAGGACTCGAGCAAGAACATTCAGATATCAGCCTTCCATATATTTAAGATCTTTGTTGCGAATCCTAATAAGCCGCAAGAAGTGAAGATCATATTGGCAAGAAACCATGAGAAATTACTCGAACTCCTCCACGATTTGTCCCCTGGTAAAGGTTCCGAAGATGATCAATTCGAAGAGGAAAAGGAGCTCATCATCGAGGAGATTCAAAAATTGTCTGGCTTGAAAAACCTCGAACGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04150 ko04152 map04150 map04152
Pfam Domains
Protein Families
Mo25

Protein Analysis

345

Amino Acids

39.84

Weight (kDa)

5.56

Isoelectric Point (pI)

46.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mo25 PF08569 5 - 335 3.4e-125 Mo25-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 602
AciI CCGC 1 cut(s) 872
AclI AACGTT 1 cut(s) 1033
AclWI GGATC 1 cut(s) 585
AcsI RAATTY 4 cut(s) 145, 464, 733, 752
AcuI CTGAAG 1 cut(s) 719
AfaI GTAC 2 cut(s) 213, 485
AfiI CCNNNNNNNGG 2 cut(s) 121, 947
AjnI CCWGG 1 cut(s) 940
AjuI GAANNNNNNNTTGG 2 cut(s) 875, 907
AluBI AGCT 3 cut(s) 268, 703, 985
AluI AGCT 3 cut(s) 268, 703, 985
Alw21I GWGCWC 1 cut(s) 987
Alw26I GTCTC 4 cut(s) 60, 179, 253, 610
AlwI GGATC 1 cut(s) 585
Ama87I CYCGRG 2 cut(s) 116, 805
AoxI GGCC 1 cut(s) 29
ApoI RAATTY 4 cut(s) 145, 464, 733, 752
Asp700I GAANNNNTTC 2 cut(s) 169, 752
AsuHPI GGTGA 2 cut(s) 194, 610
AsuII TTCGAA 1 cut(s) 969
AvaI CYCGRG 2 cut(s) 116, 805
BanII GRGCYC 1 cut(s) 987
BbsI GAAGAC 1 cut(s) 694
Bbv12I GWGCWC 1 cut(s) 987
BccI CCATC 3 cut(s) 68, 173, 276
BciT130I CCWGG 1 cut(s) 942
BclI TGATCA 2 cut(s) 202, 961
BcoDI GTCTC 4 cut(s) 60, 179, 253, 610
BfaI CTAG 1 cut(s) 27
BfmI CTRYAG 1 cut(s) 600
BglI GCCNNNNNGGC 1 cut(s) 28
BglII AGATCT 1 cut(s) 846
BisI GCNGC 1 cut(s) 872
BlsI GCNGC 1 cut(s) 873
Bme1390I CCNGG 1 cut(s) 942
BmeT110I CYCGRG 2 cut(s) 116, 805
BmiI GGNNCC 2 cut(s) 726, 952
BmrFI CCNGG 1 cut(s) 942
BmsI GCATC 1 cut(s) 547
BoxI GACNNNNGTC 1 cut(s) 98
BpiI GAAGAC 1 cut(s) 694
BpmI CTGGAG 1 cut(s) 195
Bpu10I CCTNAGC 1 cut(s) 449
Bpu14I TTCGAA 1 cut(s) 969
BpuEI CTTGAG 1 cut(s) 27
BsaJI CCNNGG 1 cut(s) 940
BsaXI ACNNNNNCTCC 2 cut(s) 906, 936
Bsc4I CCNNNNNNNGG 2 cut(s) 121, 947
BseBI CCWGG 1 cut(s) 942
BseDI CCNNGG 1 cut(s) 940
BseGI GGATG 1 cut(s) 287
BseLI CCNNNNNNNGG 2 cut(s) 121, 947
BseMII CTCAG 2 cut(s) 600, 624
BseRI GAGGAG 2 cut(s) 914, 1010
BshFI GGCC 1 cut(s) 31
BsiHKAI GWGCWC 1 cut(s) 987
BsiHKCI CYCGRG 2 cut(s) 116, 805
BslFI GGGAC 1 cut(s) 922
BslI CCNNNNNNNGG 2 cut(s) 121, 947
BsmAI GTCTC 4 cut(s) 60, 179, 253, 610
BsmFI GGGAC 1 cut(s) 922
BsmI GAATGC 1 cut(s) 461
BsnI GGCC 1 cut(s) 31
BsoBI CYCGRG 2 cut(s) 116, 805
Bsp119I TTCGAA 1 cut(s) 969
Bsp1286I GDGCHC 1 cut(s) 987
Bsp1407I TGTACA 1 cut(s) 211
Bsp143I GATC 5 cut(s) 202, 577, 846, 885, 961
BspACI CCGC 1 cut(s) 872
BspANI GGCC 1 cut(s) 31
BspCNI CTCAG 2 cut(s) 601, 625
BspLI GGNNCC 2 cut(s) 726, 952
BspPI GGATC 1 cut(s) 585
BspQI GCTCTTC 1 cut(s) 366
BspT104I TTCGAA 1 cut(s) 969
BsrGI TGTACA 1 cut(s) 211
BssECI CCNNGG 1 cut(s) 940
BssMI GATC 5 cut(s) 202, 577, 846, 885, 961
Bst2UI CCWGG 1 cut(s) 942
Bst4CI ACNGT 3 cut(s) 71, 97, 216
Bst6I CTCTTC 2 cut(s) 366, 966
BstAUI TGTACA 1 cut(s) 211
BstBI TTCGAA 1 cut(s) 969
BstC8I GCNNGC 1 cut(s) 502
BstDEI CTNAG 6 cut(s) 158, 449, 480, 609, 633, 760
BstENI CCTNNNNNAGG 2 cut(s) 119, 945
BstF5I GGATG 1 cut(s) 287
BstKTI GATC 5 cut(s) 205, 580, 849, 888, 964
BstMAI GTCTC 4 cut(s) 60, 179, 253, 610
BstMBI GATC 5 cut(s) 202, 577, 846, 885, 961
BstMWI GCNNNNNNNGC 4 cut(s) 28, 37, 206, 557
BstNI CCWGG 1 cut(s) 942
BstPAI GACNNNNGTC 1 cut(s) 98
BstSCI CCNGG 1 cut(s) 940
BstSFI CTRYAG 1 cut(s) 600
BstV2I GAAGAC 1 cut(s) 694
BstX2I RGATCY 2 cut(s) 577, 846
BstYI RGATCY 2 cut(s) 577, 846
BsuRI GGCC 1 cut(s) 31
BtsCI GGATG 1 cut(s) 287
BtsIMutI CAGTG 2 cut(s) 630, 695
Cac8I GCNNGC 1 cut(s) 502
Csp6I GTAC 2 cut(s) 212, 484
CviAII CATG 2 cut(s) 593, 905
CviQI GTAC 2 cut(s) 212, 484
DdeI CTNAG 6 cut(s) 158, 449, 480, 609, 633, 760
DpnI GATC 5 cut(s) 204, 579, 848, 887, 963
DpnII GATC 5 cut(s) 202, 577, 846, 885, 961
DrdI GACNNNNNNGTC 1 cut(s) 602
DseDI GACNNNNNNGTC 1 cut(s) 602
Eam1104I CTCTTC 2 cut(s) 366, 966
EarI CTCTTC 2 cut(s) 366, 966
Ecl136II GAGCTC 1 cut(s) 985
Eco147I AGGCCT 1 cut(s) 31
Eco24I GRGCYC 1 cut(s) 987
Eco32I GATATC 1 cut(s) 825
Eco53kI GAGCTC 1 cut(s) 985
Eco57I CTGAAG 1 cut(s) 719
Eco88I CYCGRG 2 cut(s) 116, 805
EcoICRI GAGCTC 1 cut(s) 985
EcoNI CCTNNNNNAGG 2 cut(s) 119, 945
EcoRII CCWGG 1 cut(s) 940
EcoRV GATATC 1 cut(s) 825
EcoT22I ATGCAT 2 cut(s) 461, 562
EcoT38I GRGCYC 1 cut(s) 987
FaeI CATG 2 cut(s) 596, 908
FaqI GGGAC 1 cut(s) 922
FatI CATG 2 cut(s) 592, 904
FbaI TGATCA 2 cut(s) 202, 961
Fnu4HI GCNGC 1 cut(s) 872
FokI GGATG 1 cut(s) 294
FriOI GRGCYC 1 cut(s) 987
Fsp4HI GCNGC 1 cut(s) 872
FspBI CTAG 1 cut(s) 27
GluI GCNGC 1 cut(s) 872
GsuI CTGGAG 1 cut(s) 195
HaeIII GGCC 1 cut(s) 31
Hin1II CATG 2 cut(s) 596, 908
HindIII AAGCTT 2 cut(s) 266, 701
HinfI GANTC 6 cut(s) 392, 494, 596, 803, 859, 1000
HphI GGTGA 2 cut(s) 194, 610
Hpy188I TCNGA 6 cut(s) 65, 556, 610, 712, 822, 955
Hpy188III TCNNGA 4 cut(s) 44, 83, 118, 174
Hpy99I CGWCG 2 cut(s) 101, 104
HpyAV CCTTC 3 cut(s) 115, 793, 841
HpyCH4III ACNGT 3 cut(s) 71, 97, 216
HpyCH4IV ACGT 1 cut(s) 1033
HpyCH4V TGCA 6 cut(s) 234, 307, 361, 433, 459, 560
HpyF10VI GCNNNNNNNGC 4 cut(s) 28, 37, 206, 557
HpyF3I CTNAG 6 cut(s) 158, 449, 480, 609, 633, 760
HpySE526I ACGT 1 cut(s) 1033
Hsp92II CATG 2 cut(s) 596, 908
Ksp22I TGATCA 2 cut(s) 202, 961
Kzo9I GATC 5 cut(s) 202, 577, 846, 885, 961
LguI GCTCTTC 1 cut(s) 366
LmnI GCTCC 2 cut(s) 724, 982
LpnPI CCDG 8 cut(s) 159, 191, 335, 514, 731, 927, 954, 999
LweI GCATC 1 cut(s) 547
MaeI CTAG 1 cut(s) 27
MaeII ACGT 1 cut(s) 1033
MaeIII GTNAC 1 cut(s) 679
MalI GATC 5 cut(s) 204, 579, 848, 887, 963
MboI GATC 5 cut(s) 202, 577, 846, 885, 961
MflI RGATCY 2 cut(s) 577, 846
MhlI GDGCHC 1 cut(s) 987
MluCI AATT 9 cut(s) 145, 464, 530, 673, 733, 752, 911, 965, 1007
MlyI GAGTC 4 cut(s) 386, 503, 590, 797
MmeI TCCRAC 1 cut(s) 702
Mph1103I ATGCAT 2 cut(s) 461, 562
MroXI GAANNNNTTC 2 cut(s) 169, 752
MseI TTAA 5 cut(s) 54, 108, 462, 843, 1036
MspR9I CCNGG 1 cut(s) 942
Mva1269I GAATGC 1 cut(s) 461
MvaI CCWGG 1 cut(s) 942
MwoI GCNNNNNNNGC 4 cut(s) 28, 37, 206, 557
NdeII GATC 5 cut(s) 202, 577, 846, 885, 961
NlaIII CATG 2 cut(s) 596, 908
NlaIV GGNNCC 2 cut(s) 726, 952
NmuCI GTSAC 1 cut(s) 679
NsiI ATGCAT 2 cut(s) 461, 562
NspV TTCGAA 1 cut(s) 969
PaeR7I CTCGAG 2 cut(s) 116, 805
PceI AGGCCT 1 cut(s) 31
PciSI GCTCTTC 1 cut(s) 366
PctI GAATGC 1 cut(s) 461
PdmI GAANNNNTTC 2 cut(s) 169, 752
PfeI GAWTC 2 cut(s) 859, 1000
PkrI GCNGC 1 cut(s) 873
PleI GAGTC 4 cut(s) 386, 502, 590, 797
PpsI GAGTC 4 cut(s) 386, 502, 590, 797
PshAI GACNNNNGTC 1 cut(s) 98
Psp124BI GAGCTC 1 cut(s) 987
Psp1406I AACGTT 1 cut(s) 1033
Psp6I CCWGG 1 cut(s) 940
PspGI CCWGG 1 cut(s) 940
PspN4I GGNNCC 2 cut(s) 726, 952
PspXI VCTCGAGB 1 cut(s) 805
PsuI RGATCY 2 cut(s) 577, 846
RsaI GTAC 2 cut(s) 213, 485
RsaNI GTAC 2 cut(s) 212, 484
SacI GAGCTC 1 cut(s) 987
SapI GCTCTTC 1 cut(s) 366
SaqAI TTAA 5 cut(s) 54, 108, 462, 843, 1036
SatI GCNGC 1 cut(s) 872
Sau3AI GATC 5 cut(s) 202, 577, 846, 885, 961
SchI GAGTC 4 cut(s) 386, 503, 590, 797
ScrFI CCNGG 1 cut(s) 942
SduI GDGCHC 1 cut(s) 987
SetI ASST 9 cut(s) 51, 270, 339, 623, 705, 952, 987, 1029, 1036
SfaNI GCATC 1 cut(s) 547
SfcI CTRYAG 1 cut(s) 600
Sfr274I CTCGAG 2 cut(s) 116, 805
SfuI TTCGAA 1 cut(s) 969
SlaI CTCGAG 2 cut(s) 116, 805
SmlI CTYRAG 3 cut(s) 42, 116, 805
SmoI CTYRAG 3 cut(s) 42, 116, 805
Sse9I AATT 9 cut(s) 145, 464, 530, 673, 733, 752, 911, 965, 1007
SseBI AGGCCT 1 cut(s) 31
SsiI CCGC 1 cut(s) 872
SspMI CTAG 1 cut(s) 27
SstI GAGCTC 1 cut(s) 987
StuI AGGCCT 1 cut(s) 31
StyD4I CCNGG 1 cut(s) 940
TaaI ACNGT 3 cut(s) 71, 97, 216
TaiI ACGT 1 cut(s) 1036
TaqI TCGA 8 cut(s) 84, 102, 117, 806, 918, 969, 993, 1029
TasI AATT 9 cut(s) 145, 464, 530, 673, 733, 752, 911, 965, 1007
TatI WGTACW 2 cut(s) 211, 483
TauI GCSGC 1 cut(s) 874
TfiI GAWTC 2 cut(s) 859, 1000
Tru1I TTAA 5 cut(s) 54, 108, 462, 843, 1036
Tru9I TTAA 5 cut(s) 54, 108, 462, 843, 1036
TscAI CASTG 2 cut(s) 637, 702
TseFI GTSAC 1 cut(s) 679
Tsp45I GTSAC 1 cut(s) 679
TspDTI ATGAA 5 cut(s) 251, 260, 666, 745, 761
TspRI CASTG 2 cut(s) 637, 702
XagI CCTNNNNNAGG 2 cut(s) 119, 945
XapI RAATTY 4 cut(s) 145, 464, 733, 752
XhoI CTCGAG 2 cut(s) 116, 805
XmnI GAANNNNTTC 2 cut(s) 169, 752
XspI CTAG 1 cut(s) 27
Zsp2I ATGCAT 2 cut(s) 461, 562
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.