Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0009246

Physical Location & Seq

Genomic Coordinates Forward (+)

15512896 .. 15517439

Gene Structure 4544 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1180500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGTTTTACATAAAACTTGCTTTGGAAGAAGTTGAAAAGAATTTCACGACAATGAAATGTATGATTTCTGGAGATGGGGAGACCGAACCAAATATGGATCACGTTTCACAGCTTGCTTTTGAGATTTGTAAGGAGGATGTTCTTGATCTTCTAATTCACAAGTTACCTATACTGGGATGGGAAGCAAGAAAGGATTTGGTCCATTGTTGGTCCATATTGATGAAGCAAAAGGTTGAATCAACTTATTGCTGTGCAGAATACATGGGGAACCATTTGGAATTATTAGACTTTCTTGTCGTGTACTATGATAACAAGGAAATTGCTTTGAATTGTGAGAATATGTTGAGGGATTGCATTAGATTCCCTGCACTTGCAAAATACATATTGGAGTCCGCGAGCTTTGAGTTGTTCTTCAAATATGTGGAGCTGCCTAACTTTGACGTTGCTTCTGATGCGTTCTTTACCTTTAAGGATCTACTTACTAAACATGGAACAATGGTATCTGAATTTTTGACTGCTCACTATGACGAGCTTCTCTCCGAATTCCTCTTGGAGACTCCAAATTCACATATAATGAAGCGCTACATTTTAGAAGTTTGGTACCTGAAAGTCGATTCAAGTAAAAACATCCAAATCTCTGCCTTCCACATCTTCAAGGTGCGTCCCCTGCTCATTTTTCCTCTCCTGCTTCCTAGATGTGCGTGTTTGTATGAATGTGATAGAACATGGAGTGCATTTTGTACGCTGCTTTTTGAACTTCATGCAATGAGGGATGTGGGTTGGAACAATGTCTTTGTTGCGAATCCTAATAGCACTTATGAGTTATATGTGTTCTGTAGGTTTGCCATTTTATGGAGATTTTGTTTGTTGCTTTGTTTGATCAAACTCCTCCAGAATGGAGAGTTGTACATGATGATGATTGTGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04150 ko04152 map04150 map04152

Pfam Domains

Protein Families

Mo25

Protein Analysis

310

Amino Acids

36.42

Weight (kDa)

5.33

Isoelectric Point (pI)

43.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mo25	PF08569	7 - 177	8.9e-58	Mo25-like
Mo25	PF08569	177 - 220	1.2e-07	Mo25-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009246)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18940 AT5G18940
fragaria_vesca	FvH4_4g14070 FvH4_4g14070 FvH4_4g14070 FvH4_4g14070 FvH4_4g14070
malus_domestica	MD13G1179400.v1.1 MD16G1180500.v1.1
prunus_persica	Prupe.1G148000_v2.0.a1
pyrus_communis	pycom13g15480 pycom16g15150
rosa_chinensis	RchiOBHm_Chr4g0419281
rosa_laevigata	RLG00000007819
rosa_multiflora	Rmu_co8065782.1_g000001
rosa_roxburghii	Rroxscaffold_5G00362270
rosa_rugosa	Rorug04G0158000
rosa_samantha	Rh4AG219800 Rh4BG221300 Rh4CG232600 Rh4DG218800
rosa_wichuraiana	Rw4G018800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	293
Acc65I	GGTACC	1 cut(s)	600
AccB1I	GGYRCC	1 cut(s)	600
AccB7I	CCANNNNNTGG	1 cut(s)	852
AccII	CGCG	1 cut(s)	395
AciI	CCGC	1 cut(s)	393
AclWI	GGATC	2 cut(s)	105, 480
AcsI	RAATTY	4 cut(s)	40, 506, 542, 562
AfaI	GTAC	4 cut(s)	302, 602, 742, 908
AfeI	AGCGCT	1 cut(s)	581
AfiI	CCNNNNNNNGG	2 cut(s)	173, 852
AgsI	TTSAA	7 cut(s)	35, 236, 328, 415, 618, 655, 755
AluBI	AGCT	4 cut(s)	112, 399, 427, 532
AluI	AGCT	4 cut(s)	112, 399, 427, 532
Alw26I	GTCTC	2 cut(s)	74, 548
AlwI	GGATC	2 cut(s)	105, 480
Aor51HI	AGCGCT	1 cut(s)	581
ApeKI	GCWGC	2 cut(s)	427, 745
ApoI	RAATTY	4 cut(s)	40, 506, 542, 562
Asp718I	GGTACC	1 cut(s)	600
AspLEI	GCGC	1 cut(s)	582
AspS9I	GGNCC	2 cut(s)	199, 210
AvaII	GGWCC	2 cut(s)	199, 210
BaeI	ACNNNNGTAYC	2 cut(s)	483, 516
BanI	GGYRCC	1 cut(s)	600
BbvI	GCAGC	2 cut(s)	414, 732
BccI	CCATC	2 cut(s)	68, 171
BclI	TGATCA	1 cut(s)	879
BcoDI	GTCTC	2 cut(s)	74, 548
BfaI	CTAG	1 cut(s)	693
BfmI	CTRYAG	1 cut(s)	835
BfoI	RGCGCY	1 cut(s)	583
BisI	GCNGC	2 cut(s)	428, 746
BlsI	GCNGC	2 cut(s)	429, 747
Bme18I	GGWCC	2 cut(s)	199, 210
BmgT120I	GGNCC	2 cut(s)	199, 210
BmiI	GGNNCC	2 cut(s)	269, 602
BmrI	ACTGGG	1 cut(s)	182
BmsI	GCATC	1 cut(s)	442
BmuI	ACTGGG	1 cut(s)	182
BplI	GAGNNNNNCTC	2 cut(s)	521, 553
BpmI	CTGGAG	2 cut(s)	90, 875
BsaI	GGTCTC	1 cut(s)	74
BsaXI	ACNNNNNCTCC	2 cut(s)	847, 877
Bsc4I	CCNNNNNNNGG	2 cut(s)	173, 852
Bse1I	ACTGG	1 cut(s)	177
Bse3DI	GCAATG	1 cut(s)	771
BseGI	GGATG	4 cut(s)	142, 182, 627, 778
BseLI	CCNNNNNNNGG	2 cut(s)	173, 852
BseMI	GCAATG	1 cut(s)	771
BseNI	ACTGG	1 cut(s)	177
BseRI	GAGGAG	1 cut(s)	878
BseXI	GCAGC	2 cut(s)	414, 732
BsgI	GTGCAG	2 cut(s)	273, 351
Bsh1236I	CGCG	1 cut(s)	395
BshNI	GGYRCC	1 cut(s)	600
BslFI	GGGAC	1 cut(s)	648
BslI	CCNNNNNNNGG	2 cut(s)	173, 852
BsmAI	GTCTC	2 cut(s)	74, 548
BsmFI	GGGAC	1 cut(s)	648
Bso31I	GGTCTC	1 cut(s)	74
Bsp1407I	TGTACA	1 cut(s)	906
Bsp143I	GATC	4 cut(s)	97, 145, 472, 879
BspACI	CCGC	1 cut(s)	393
BspFNI	CGCG	1 cut(s)	395
BspLI	GGNNCC	2 cut(s)	269, 602
BspPI	GGATC	2 cut(s)	105, 480
BspT107I	GGYRCC	1 cut(s)	600
BspTNI	GGTCTC	1 cut(s)	74
BsrDI	GCAATG	1 cut(s)	771
BsrGI	TGTACA	1 cut(s)	906
BsrI	ACTGG	1 cut(s)	177
BssMI	GATC	4 cut(s)	97, 145, 472, 879
BstAUI	TGTACA	1 cut(s)	906
BstC8I	GCNNGC	2 cut(s)	114, 397
BstF5I	GGATG	4 cut(s)	142, 182, 627, 778
BstFNI	CGCG	1 cut(s)	395
BstH2I	RGCGCY	1 cut(s)	583
BstHHI	GCGC	1 cut(s)	582
BstKTI	GATC	4 cut(s)	100, 148, 475, 882
BstMAI	GTCTC	2 cut(s)	74, 548
BstMBI	GATC	4 cut(s)	97, 145, 472, 879
BstMWI	GCNNNNNNNGC	2 cut(s)	452, 667
BstSFI	CTRYAG	1 cut(s)	835
BstUI	CGCG	1 cut(s)	395
BstV1I	GCAGC	2 cut(s)	414, 732
BstX2I	RGATCY	1 cut(s)	472
BstYI	RGATCY	1 cut(s)	472
BtsCI	GGATG	4 cut(s)	142, 182, 627, 778
Cac8I	GCNNGC	2 cut(s)	114, 397
CfoI	GCGC	1 cut(s)	582
Cfr13I	GGNCC	2 cut(s)	199, 210
CseI	GACGC	1 cut(s)	650
Csp6I	GTAC	4 cut(s)	301, 601, 741, 907
CviAII	CATG	5 cut(s)	262, 488, 726, 761, 910
CviJI	RGCY	4 cut(s)	112, 399, 427, 532
CviKI_1	RGCY	4 cut(s)	112, 399, 427, 532
CviQI	GTAC	4 cut(s)	301, 601, 741, 907
DpnI	GATC	4 cut(s)	99, 147, 474, 881
DpnII	GATC	4 cut(s)	97, 145, 472, 879
DrdI	GACNNNNNNGTC	1 cut(s)	293
DseDI	GACNNNNNNGTC	1 cut(s)	293
Eco31I	GGTCTC	1 cut(s)	74
Eco47I	GGWCC	2 cut(s)	199, 210
Eco47III	AGCGCT	1 cut(s)	581
EcoRI	GAATTC	1 cut(s)	542
FaeI	CATG	5 cut(s)	265, 491, 729, 764, 913
FaqI	GGGAC	1 cut(s)	648
FatI	CATG	5 cut(s)	261, 487, 725, 760, 909
FbaI	TGATCA	1 cut(s)	879
Fnu4HI	GCNGC	2 cut(s)	428, 746
FokI	GGATG	4 cut(s)	149, 189, 614, 785
Fsp4HI	GCNGC	2 cut(s)	428, 746
FspBI	CTAG	1 cut(s)	693
GlaI	GCGC	1 cut(s)	581
GluI	GCNGC	2 cut(s)	428, 746
GsuI	CTGGAG	2 cut(s)	90, 875
HaeII	RGCGCY	1 cut(s)	583
HgaI	GACGC	1 cut(s)	650
HhaI	GCGC	1 cut(s)	582
Hin1II	CATG	5 cut(s)	265, 491, 729, 764, 913
Hin6I	GCGC	1 cut(s)	580
HinP1I	GCGC	1 cut(s)	580
HinfI	GANTC	6 cut(s)	236, 360, 389, 556, 614, 802
Hpy166II	GTNNAC	1 cut(s)	301
Hpy188I	TCNGA	3 cut(s)	451, 505, 541
Hpy188III	TCNNGA	4 cut(s)	46, 69, 143, 892
Hpy8I	GTNNAC	1 cut(s)	301
HpyAV	CCTTC	1 cut(s)	652
HpyCH4IV	ACGT	2 cut(s)	102, 441
HpyCH4V	TGCA	6 cut(s)	254, 354, 368, 374, 734, 764
HpyF10VI	GCNNNNNNNGC	2 cut(s)	452, 667
HpySE526I	ACGT	2 cut(s)	102, 441
Hsp92II	CATG	5 cut(s)	265, 491, 729, 764, 913
HspAI	GCGC	1 cut(s)	580
KpnI	GGTACC	1 cut(s)	604
Ksp22I	TGATCA	1 cut(s)	879
Kzo9I	GATC	4 cut(s)	97, 145, 472, 879
LmnI	GCTCC	1 cut(s)	424
LpnPI	CCDG	7 cut(s)	54, 158, 378, 617, 680, 698, 905
Lsp1109I	GCAGC	2 cut(s)	414, 732
LweI	GCATC	1 cut(s)	442
MaeI	CTAG	1 cut(s)	693
MaeII	ACGT	2 cut(s)	102, 441
MaeIII	GTNAC	1 cut(s)	162
MalI	GATC	4 cut(s)	99, 147, 474, 881
MboI	GATC	4 cut(s)	97, 145, 472, 879
MboII	GAAGA	4 cut(s)	38, 140, 403, 643
MflI	RGATCY	1 cut(s)	472
MluCI	AATT	8 cut(s)	40, 153, 278, 318, 328, 506, 542, 562
MlyI	GAGTC	2 cut(s)	398, 550
MmeI	TCCRAC	1 cut(s)	761
MnlI	CCTC	7 cut(s)	127, 339, 557, 690, 762, 899, 918
MseI	TTAA	1 cut(s)	468
MslI	CAYNNNNRTG	3 cut(s)	50, 218, 914
MvnI	CGCG	1 cut(s)	395
MwoI	GCNNNNNNNGC	2 cut(s)	452, 667
NdeII	GATC	4 cut(s)	97, 145, 472, 879
NlaIII	CATG	5 cut(s)	265, 491, 729, 764, 913
NlaIV	GGNNCC	2 cut(s)	269, 602
PfeI	GAWTC	4 cut(s)	236, 360, 614, 802
PflMI	CCANNNNNTGG	1 cut(s)	852
PkrI	GCNGC	2 cut(s)	429, 747
PleI	GAGTC	2 cut(s)	397, 550
PpsI	GAGTC	2 cut(s)	397, 550
PspN4I	GGNNCC	2 cut(s)	269, 602
PspPI	GGNCC	2 cut(s)	199, 210
PsuI	RGATCY	1 cut(s)	472
RsaI	GTAC	4 cut(s)	302, 602, 742, 908
RsaNI	GTAC	4 cut(s)	301, 601, 741, 907
RseI	CAYNNNNRTG	3 cut(s)	50, 218, 914
SaqAI	TTAA	1 cut(s)	468
SatI	GCNGC	2 cut(s)	428, 746
Sau3AI	GATC	4 cut(s)	97, 145, 472, 879
Sau96I	GGNCC	2 cut(s)	199, 210
SchI	GAGTC	2 cut(s)	398, 550
SfaNI	GCATC	1 cut(s)	442
SfcI	CTRYAG	1 cut(s)	835
SinI	GGWCC	2 cut(s)	199, 210
SmiMI	CAYNNNNRTG	3 cut(s)	50, 218, 914
Sse9I	AATT	8 cut(s)	40, 153, 278, 318, 328, 506, 542, 562
SsiI	CCGC	1 cut(s)	393
SspMI	CTAG	1 cut(s)	693
TaiI	ACGT	2 cut(s)	105, 444
TaqI	TCGA	1 cut(s)	612
TaqII	GACCGA	1 cut(s)	98
TasI	AATT	8 cut(s)	40, 153, 278, 318, 328, 506, 542, 562
TatI	WGTACW	2 cut(s)	300, 906
TfiI	GAWTC	4 cut(s)	236, 360, 614, 802
Tru1I	TTAA	1 cut(s)	468
Tru9I	TTAA	1 cut(s)	468
TseI	GCWGC	2 cut(s)	427, 745
TspDTI	ATGAA	5 cut(s)	68, 236, 590, 726, 749
Van91I	CCANNNNNTGG	1 cut(s)	852
VpaK11BI	GGWCC	2 cut(s)	199, 210
XapI	RAATTY	4 cut(s)	40, 506, 542, 562
XspI	CTAG	1 cut(s)	693

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.