Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004471

Physical Location & Seq

Genomic Coordinates Reverse (-)

6423305 .. 6428468

Gene Structure 5164 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G19150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGTTGGTGAAGCCCAGTATCATCTCTGGCTTGGTACGATTGACTTCTCATTCACCTTCTTCTTCTTCAAGTGTGCTCAGAAGGCAAGAGTTCTTGGTACGAACGCTTTGTGGGTCACCAATCATCAGAGCAATGAGTTCCACATCAGAGGCCGACGCTGAGAGTGTTCTTAGAACCGTGACGCCATCGCTCGATCTCAAACGACACAAAGGCCAAGCTGGGAAGATAGCTGTGATTGGAGGATGTCGTGAATACACAGGAGCTCCATACTTCGCTGCCATTTCAGCTTTGAAAATCGGTGCTGATTTGTCTCATGTATTCTGCACGAAAGATGCAGCTCCTGTTATAAAGAGCTATAGTCCTGAGCTTATAGTTCACCCTGTTCTTGAGGAATCATATAGCATCAGTCAACTCAGTGAAGAAGATAAAAGAGAAGTTCAAGATAAAGTGCTTGGAGAAGTCGGTAAATGGATGGAAAGATTTGATTGTCTTGTTATTGGTCCTGGTTTGGGAAGAGATCCATTTCTCCTGGAATGTGTGAGTATTATCATGCTTCTTGCCAAAAAGTCCAATGTTCCTTTTGTTATAGATGGGGACGGGCTGTTTCTTGTAACAAATTCCATTGATCTTGTCCACAGCTATCCGCTTGCTGTCTTAACCCCAAATGTGAATGAGTATAAGCGCCTGGTTCAAAAAGTACTGAATTGTGAAGTAGATGAACAAAATGCTGAAGATCAGTTACGTTCTTTGGCCAAACAGATTGGTGGTGTCACGATTCTCAGGAAAGGGAAATCTGATCTTATAAGCAATGGGGAGACAGTAAAATCAGTAAGCATATATGGTTCACCAAGGCGCTGTGGTGGACAAGGCGATATTCTCTCTGGAGGTGTTGCAGTGTTTTTGTCATGGGCACAACAGCTTAAATCCGATCCTGAAAGTCCCTCTGAGAATCCAGCTATCTTGGGATGCATAGCTGCATCTGGCCTTCTCAGAAAGGCTGCATCTCTGGCCTTTACAAAACATAAGAGATCAACTCTCACAAGCGACATTATCGAATGTTTAGGGGAGAGTTTGGAGGATATCTGCCCTGCATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006734 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009117 GO:0009507 GO:0009536 GO:0009987 GO:0016829 GO:0016835 GO:0016836 GO:0016853 GO:0016854 GO:0019362 GO:0019637 GO:0019674 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046496 GO:0047453 GO:0051186 GO:0052856 GO:0052857 GO:0055086 GO:0071704 GO:0072524 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Carb_kinase

Protein Analysis

365

Amino Acids

39.27

Weight (kDa)

6.61

Isoelectric Point (pI)

52.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Carb_kinase	PF01256	77 - 352	9.6e-47	NAD(P)H-hydrate dehydratase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004471)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19150 AT5G19150
fragaria_vesca	FvH4_4g14760 FvH4_4g14760 FvH4_4g14760 FvH4_4g14760
malus_domestica	MD16G1186000.v1.1
prunus_persica	Prupe.1G152800_v2.0.a1 Prupe.1G152800_v2.0.a1 Prupe.1G152800_v2.0.a1 Prupe.1G152800_v2.0.a1 Prupe.1G152800_v2.0.a1 Prupe.1G152800_v2.0.a1
pyrus_communis	pycom16g15570
rosa_chinensis	RchiOBHm_Chr0c32g0501471 RchiOBHm_Chr0c32g0501661 RchiOBHm_Chr3g0483801 RchiOBHm_Chr4g0417841
rosa_laevigata	RLG00000007895 RLG00000023259
rosa_multiflora	Rmu_sc0001333.1_g000001
rosa_roxburghii	Rroxscaffold_5G00361250 Rroxscaffold_6G00398130
rosa_rugosa	Rorug04G0149500
rosa_samantha	Rh3AG256800 Rh3CG291600 Rh4AG212000 Rh4BG219000 Rh4CG222700 Rh4DG209800
rosa_wichuraiana	Rw3G023200 Rw4G017970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	347, 803
AciI	CCGC	1 cut(s)	644
AclWI	GGATC	2 cut(s)	512, 923
AcoI	YGGCCR	1 cut(s)	750
AcsI	RAATTY	1 cut(s)	616
AcuI	CTGAAG	1 cut(s)	750
AcyI	GRCGYC	1 cut(s)	182
AfaI	GTAC	3 cut(s)	36, 99, 699
AfiI	CCNNNNNNNGG	1 cut(s)	509
AgsI	TTSAA	4 cut(s)	69, 292, 440, 692
AjnI	CCWGG	3 cut(s)	502, 528, 684
Alw21I	GWGCWC	2 cut(s)	78, 265
Alw26I	GTCTC	2 cut(s)	315, 809
AlwI	GGATC	2 cut(s)	512, 923
AlwNI	CAGNNNCTG	1 cut(s)	341
AoxI	GGCC	5 cut(s)	150, 211, 750, 982, 1008
ApeKI	GCWGC	4 cut(s)	275, 335, 974, 998
ApoI	RAATTY	1 cut(s)	616
AspLEI	GCGC	2 cut(s)	684, 855
AspS9I	GGNCC	1 cut(s)	500
AsuHPI	GGTGA	5 cut(s)	19, 45, 108, 368, 837
AvaII	GGWCC	1 cut(s)	500
BaeGI	GKGCMC	1 cut(s)	913
BalI	TGGCCA	1 cut(s)	752
BanII	GRGCYC	1 cut(s)	265
BarI	GAAGNNNNNNTAC	2 cut(s)	723, 755
Bbv12I	GWGCWC	2 cut(s)	78, 265
BbvI	GCAGC	4 cut(s)	262, 347, 961, 985
BccI	CCATC	3 cut(s)	193, 466, 584
BciT130I	CCWGG	3 cut(s)	504, 530, 686
BcoDI	GTCTC	2 cut(s)	315, 809
BfmI	CTRYAG	1 cut(s)	355
BfoI	RGCGCY	2 cut(s)	685, 856
BisI	GCNGC	4 cut(s)	276, 336, 975, 999
BlsI	GCNGC	4 cut(s)	277, 337, 976, 1000
BmcAI	AGTACT	1 cut(s)	699
Bme1390I	CCNGG	3 cut(s)	504, 530, 686
Bme18I	GGWCC	1 cut(s)	500
BmgT120I	GGNCC	1 cut(s)	500
BmrFI	CCNGG	3 cut(s)	504, 530, 686
BmrI	ACTGGG	1 cut(s)	9
BmsI	GCATC	5 cut(s)	322, 411, 956, 986, 1010
BmuI	ACTGGG	1 cut(s)	9
BplI	GAGNNNNNCTC	2 cut(s)	1018, 1050
BpmI	CTGGAG	1 cut(s)	903
Bpu10I	CCTNAGC	1 cut(s)	363
BpuEI	CTTGAG	1 cut(s)	407
BsaHI	GRCGYC	1 cut(s)	182
BsaJI	CCNNGG	1 cut(s)	848
BsaXI	ACNNNNNCTCC	2 cut(s)	247, 277
Bsc4I	CCNNNNNNNGG	1 cut(s)	509
Bse1I	ACTGG	1 cut(s)	15
Bse3DI	GCAATG	2 cut(s)	138, 814
BseBI	CCWGG	3 cut(s)	504, 530, 686
BseDI	CCNNGG	1 cut(s)	848
BseGI	GGATG	3 cut(s)	248, 477, 971
BseLI	CCNNNNNNNGG	1 cut(s)	509
BseMI	GCAATG	2 cut(s)	138, 814
BseMII	CTCAG	7 cut(s)	91, 150, 354, 427, 793, 936, 1003
BseNI	ACTGG	1 cut(s)	15
BseSI	GKGCMC	1 cut(s)	913
BseXI	GCAGC	4 cut(s)	262, 347, 961, 985
BseYI	CCCAGC	1 cut(s)	218
BsgI	GTGCAG	1 cut(s)	307
BshFI	GGCC	5 cut(s)	152, 213, 752, 984, 1010
BsiHKAI	GWGCWC	2 cut(s)	78, 265
BslFI	GGGAC	2 cut(s)	608, 924
BslI	CCNNNNNNNGG	1 cut(s)	509
BsmAI	GTCTC	2 cut(s)	315, 809
BsmFI	GGGAC	2 cut(s)	608, 924
BsnI	GGCC	5 cut(s)	152, 213, 752, 984, 1010
Bsp1286I	GDGCHC	3 cut(s)	78, 265, 913
Bsp143I	GATC	7 cut(s)	193, 517, 625, 733, 796, 928, 1028
BspACI	CCGC	1 cut(s)	644
BspANI	GGCC	5 cut(s)	152, 213, 752, 984, 1010
BspCNI	CTCAG	7 cut(s)	90, 151, 355, 426, 792, 937, 1002
BspPI	GGATC	2 cut(s)	512, 923
BsrDI	GCAATG	2 cut(s)	138, 814
BsrI	ACTGG	1 cut(s)	15
BssECI	CCNNGG	1 cut(s)	848
BssMI	GATC	7 cut(s)	193, 517, 625, 733, 796, 928, 1028
BssNI	GRCGYC	1 cut(s)	182
BssT1I	CCWWGG	1 cut(s)	848
Bst2UI	CCWGG	3 cut(s)	504, 530, 686
Bst4CI	ACNGT	2 cut(s)	178, 820
Bst6I	CTCTTC	1 cut(s)	508
BstACI	GRCGYC	1 cut(s)	182
BstC8I	GCNNGC	1 cut(s)	648
BstDEI	CTNAG	8 cut(s)	77, 159, 170, 363, 413, 779, 945, 989
BstEII	GGTNACC	1 cut(s)	114
BstF5I	GGATG	3 cut(s)	248, 477, 971
BstH2I	RGCGCY	2 cut(s)	685, 856
BstHHI	GCGC	2 cut(s)	684, 855
BstKTI	GATC	7 cut(s)	196, 520, 628, 736, 799, 931, 1031
BstMAI	GTCTC	2 cut(s)	315, 809
BstMBI	GATC	7 cut(s)	193, 517, 625, 733, 796, 928, 1028
BstMWI	GCNNNNNNNGC	3 cut(s)	82, 284, 1007
BstNI	CCWGG	3 cut(s)	504, 530, 686
BstPI	GGTNACC	1 cut(s)	114
BstSCI	CCNGG	3 cut(s)	502, 528, 684
BstSFI	CTRYAG	1 cut(s)	355
BstSLI	GKGCMC	1 cut(s)	913
BstV1I	GCAGC	4 cut(s)	262, 347, 961, 985
BstX2I	RGATCY	1 cut(s)	517
BstYI	RGATCY	1 cut(s)	517
BsuRI	GGCC	5 cut(s)	152, 213, 752, 984, 1010
BtgZI	GCGATG	1 cut(s)	171
BtsCI	GGATG	3 cut(s)	248, 477, 971
BtsI	GCAGTG	1 cut(s)	900
BtsIMutI	CAGTG	2 cut(s)	421, 900
Cac8I	GCNNGC	1 cut(s)	648
CaiI	CAGNNNCTG	1 cut(s)	341
CfoI	GCGC	2 cut(s)	684, 855
Cfr13I	GGNCC	1 cut(s)	500
CseI	GACGC	2 cut(s)	164, 190
Csp6I	GTAC	3 cut(s)	35, 98, 698
CviAII	CATG	3 cut(s)	314, 550, 906
CviQI	GTAC	3 cut(s)	35, 98, 698
DdeI	CTNAG	8 cut(s)	77, 159, 170, 363, 413, 779, 945, 989
DpnI	GATC	7 cut(s)	195, 519, 627, 735, 798, 930, 1030
DpnII	GATC	7 cut(s)	193, 517, 625, 733, 796, 928, 1028
EaeI	YGGCCR	1 cut(s)	750
Eam1104I	CTCTTC	1 cut(s)	508
EarI	CTCTTC	1 cut(s)	508
Ecl136II	GAGCTC	1 cut(s)	263
Eco130I	CCWWGG	1 cut(s)	848
Eco24I	GRGCYC	1 cut(s)	265
Eco32I	GATATC	1 cut(s)	1081
Eco47I	GGWCC	1 cut(s)	500
Eco53kI	GAGCTC	1 cut(s)	263
Eco57I	CTGAAG	1 cut(s)	750
Eco91I	GGTNACC	1 cut(s)	114
EcoICRI	GAGCTC	1 cut(s)	263
EcoO65I	GGTNACC	1 cut(s)	114
EcoRII	CCWGG	3 cut(s)	502, 528, 684
EcoRV	GATATC	1 cut(s)	1081
EcoT14I	CCWWGG	1 cut(s)	848
EcoT22I	ATGCAT	1 cut(s)	971
EcoT38I	GRGCYC	1 cut(s)	265
ErhI	CCWWGG	1 cut(s)	848
FaeI	CATG	3 cut(s)	317, 553, 909
FaqI	GGGAC	2 cut(s)	608, 924
FatI	CATG	3 cut(s)	313, 549, 905
Fnu4HI	GCNGC	4 cut(s)	276, 336, 975, 999
FokI	GGATG	3 cut(s)	255, 484, 978
FriOI	GRGCYC	1 cut(s)	265
Fsp4HI	GCNGC	4 cut(s)	276, 336, 975, 999
GlaI	GCGC	2 cut(s)	683, 854
GluI	GCNGC	4 cut(s)	276, 336, 975, 999
GsaI	CCCAGC	1 cut(s)	222
GsuI	CTGGAG	1 cut(s)	903
HaeII	RGCGCY	2 cut(s)	685, 856
HaeIII	GGCC	5 cut(s)	152, 213, 752, 984, 1010
HgaI	GACGC	2 cut(s)	164, 190
HhaI	GCGC	2 cut(s)	684, 855
Hin1I	GRCGYC	1 cut(s)	182
Hin1II	CATG	3 cut(s)	317, 553, 909
Hin6I	GCGC	2 cut(s)	682, 853
HinP1I	GCGC	2 cut(s)	682, 853
HincII	GTYRAC	1 cut(s)	410
HindII	GTYRAC	1 cut(s)	410
HinfI	GANTC	3 cut(s)	392, 775, 949
HphI	GGTGA	5 cut(s)	19, 45, 108, 368, 837
Hpy166II	GTNNAC	5 cut(s)	376, 410, 634, 845, 863
Hpy188I	TCNGA	7 cut(s)	80, 128, 148, 796, 928, 946, 992
Hpy188III	TCNNGA	8 cut(s)	248, 362, 386, 440, 772, 781, 882, 932
Hpy8I	GTNNAC	5 cut(s)	376, 410, 634, 845, 863
Hpy99I	CGWCG	1 cut(s)	158
HpyAV	CCTTC	3 cut(s)	66, 75, 995
HpyCH4III	ACNGT	2 cut(s)	178, 820
HpyCH4IV	ACGT	1 cut(s)	742
HpyCH4V	TGCA	7 cut(s)	324, 335, 893, 969, 977, 1001, 1091
HpyF10VI	GCNNNNNNNGC	3 cut(s)	82, 284, 1007
HpyF3I	CTNAG	8 cut(s)	77, 159, 170, 363, 413, 779, 945, 989
HpySE526I	ACGT	1 cut(s)	742
Hsp92I	GRCGYC	1 cut(s)	182
Hsp92II	CATG	3 cut(s)	317, 553, 909
HspAI	GCGC	2 cut(s)	682, 853
Kzo9I	GATC	7 cut(s)	193, 517, 625, 733, 796, 928, 1028
LmnI	GCTCC	3 cut(s)	260, 268, 343
Lsp1109I	GCAGC	4 cut(s)	262, 347, 961, 985
LweI	GCATC	5 cut(s)	322, 411, 956, 986, 1010
MaeII	ACGT	1 cut(s)	742
MaeIII	GTNAC	5 cut(s)	114, 178, 610, 738, 769
MalI	GATC	7 cut(s)	195, 519, 627, 735, 798, 930, 1030
MboI	GATC	7 cut(s)	193, 517, 625, 733, 796, 928, 1028
MboII	GAAGA	8 cut(s)	51, 54, 57, 235, 431, 434, 525, 743
MflI	RGATCY	1 cut(s)	517
MhlI	GDGCHC	3 cut(s)	78, 265, 913
MlsI	TGGCCA	1 cut(s)	752
MluCI	AATT	2 cut(s)	616, 703
MluNI	TGGCCA	1 cut(s)	752
MnlI	CCTC	6 cut(s)	142, 233, 382, 878, 952, 1069
Mox20I	TGGCCA	1 cut(s)	752
Mph1103I	ATGCAT	1 cut(s)	971
MscI	TGGCCA	1 cut(s)	752
MseI	TTAA	3 cut(s)	656, 921, 1096
Msp20I	TGGCCA	1 cut(s)	752
MspR9I	CCNGG	3 cut(s)	504, 530, 686
MvaI	CCWGG	3 cut(s)	504, 530, 686
MwoI	GCNNNNNNNGC	3 cut(s)	82, 284, 1007
NdeII	GATC	7 cut(s)	193, 517, 625, 733, 796, 928, 1028
NlaIII	CATG	3 cut(s)	317, 553, 909
NmuCI	GTSAC	3 cut(s)	114, 178, 769
NsiI	ATGCAT	1 cut(s)	971
PfeI	GAWTC	3 cut(s)	392, 775, 949
PfoI	TCCNGGA	1 cut(s)	528
PkrI	GCNGC	4 cut(s)	277, 337, 976, 1000
PsiI	TTATAA	2 cut(s)	347, 803
Psp124BI	GAGCTC	1 cut(s)	265
Psp6I	CCWGG	3 cut(s)	502, 528, 684
PspEI	GGTNACC	1 cut(s)	114
PspFI	CCCAGC	1 cut(s)	218
PspGI	CCWGG	3 cut(s)	502, 528, 684
PspPI	GGNCC	1 cut(s)	500
PstNI	CAGNNNCTG	1 cut(s)	341
PsuI	RGATCY	1 cut(s)	517
RsaI	GTAC	3 cut(s)	36, 99, 699
RsaNI	GTAC	3 cut(s)	35, 98, 698
SacI	GAGCTC	1 cut(s)	265
SaqAI	TTAA	3 cut(s)	656, 921, 1096
SatI	GCNGC	4 cut(s)	276, 336, 975, 999
Sau3AI	GATC	7 cut(s)	193, 517, 625, 733, 796, 928, 1028
Sau96I	GGNCC	1 cut(s)	500
ScaI	AGTACT	1 cut(s)	699
ScrFI	CCNGG	3 cut(s)	504, 530, 686
SduI	GDGCHC	3 cut(s)	78, 265, 913
SfaNI	GCATC	5 cut(s)	322, 411, 956, 986, 1010
SfcI	CTRYAG	1 cut(s)	355
SinI	GGWCC	1 cut(s)	500
SmlI	CTYRAG	1 cut(s)	386
SmoI	CTYRAG	1 cut(s)	386
Sse9I	AATT	2 cut(s)	616, 703
SsiI	CCGC	1 cut(s)	644
SstI	GAGCTC	1 cut(s)	265
StyD4I	CCNGG	3 cut(s)	502, 528, 684
StyI	CCWWGG	1 cut(s)	848
TaaI	ACNGT	2 cut(s)	178, 820
TaiI	ACGT	1 cut(s)	745
TaqI	TCGA	2 cut(s)	192, 1053
TasI	AATT	2 cut(s)	616, 703
TatI	WGTACW	1 cut(s)	697
TfiI	GAWTC	3 cut(s)	392, 775, 949
Tru1I	TTAA	3 cut(s)	656, 921, 1096
Tru9I	TTAA	3 cut(s)	656, 921, 1096
TscAI	CASTG	2 cut(s)	421, 900
TseFI	GTSAC	3 cut(s)	114, 178, 769
TseI	GCWGC	4 cut(s)	275, 335, 974, 998
Tsp45I	GTSAC	3 cut(s)	114, 178, 769
TspDTI	ATGAA	1 cut(s)	732
TspRI	CASTG	2 cut(s)	421, 900
VpaK11BI	GGWCC	1 cut(s)	500
XapI	RAATTY	1 cut(s)	616
ZrmI	AGTACT	1 cut(s)	699
Zsp2I	ATGCAT	1 cut(s)	971

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.