Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0004471

Physical Location & Seq

Genomic Coordinates Forward (+)

26312022 .. 26312621

Gene Structure 600 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0149500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGTCCATGGACGCAGAACCCAATGTTACTACTCTTGTGACTGTTTTGTCTTCGTGTTCTAGTTTAAGAGCTTTCAAGTTAGGTAAAGCTGTTCATGGCCATTGTTTGAGGAACGTACACAAGTGTAATATGATTTTGGACAATGCAATGTTGGATTTCTATCTGAGATCTGGTTCTTTGGTGGCTGCAAGATACTTGTTTGTCATTATGCCCAAGAGAGATTTTGTTTCTTGGAGTAGCATTGTGGGTGGTTATGCACATAGAGGTTTATGTGAGGAGGCAATGAGACTTTTCCAACAACTGGTGCTGGGCTGGGAAGTTGAGCTGAATGAGGCTACCATTGTCAATGTATTGTCAGCATGTTCTTCTGTTTGTTCCTTGAGTTCAAGCCAGCAGGTGCATTTCTATATCAGTACTCAGCCAGATCTCATGGTGAATAGCAATGTGGGAAATGCCTTGATCAACATGTATGTTAGGAGTGGACATTTGGGTATGGCTATTTCGGTTTTTAAGGCCTTGGAGTGCAAAGATATCATTTTATGGAGTACCATAATAAGCAGTACGGCATACATGTGTTGCAGCTCTTTTCCTGAATGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006734 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009117 GO:0009507 GO:0009536 GO:0009987 GO:0016829 GO:0016835 GO:0016836 GO:0016853 GO:0016854 GO:0019362 GO:0019637 GO:0019674 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046496 GO:0047453 GO:0051186 GO:0052856 GO:0052857 GO:0055086 GO:0071704 GO:0072524 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Carb_kinase

Protein Analysis

199

Amino Acids

21.97

Weight (kDa)

6.97

Isoelectric Point (pI)

52.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004471)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19150 AT5G19150
fragaria_vesca	FvH4_4g14760 FvH4_4g14760 FvH4_4g14760 FvH4_4g14760
malus_domestica	MD16G1186000.v1.1
prunus_persica	Prupe.1G152800_v2.0.a1 Prupe.1G152800_v2.0.a1 Prupe.1G152800_v2.0.a1 Prupe.1G152800_v2.0.a1 Prupe.1G152800_v2.0.a1 Prupe.1G152800_v2.0.a1
pyrus_communis	pycom16g15570
rosa_chinensis	RchiOBHm_Chr0c32g0501471 RchiOBHm_Chr0c32g0501661 RchiOBHm_Chr3g0483801 RchiOBHm_Chr4g0417841
rosa_laevigata	RLG00000007895 RLG00000023259
rosa_multiflora	Rmu_sc0001333.1_g000001
rosa_roxburghii	Rroxscaffold_5G00361250 Rroxscaffold_6G00398130
rosa_rugosa	Rorug04G0149500
rosa_samantha	Rh3AG256800 Rh3CG291600 Rh4AG212000 Rh4BG219000 Rh4CG222700 Rh4DG209800
rosa_wichuraiana	Rw3G023200 Rw4G017970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	385
AasI	GACNNNNNNGTC	1 cut(s)	46
Acc36I	ACCTGC	1 cut(s)	385
AccB7I	CCANNNNNTGG	1 cut(s)	301
AcoI	YGGCCR	1 cut(s)	97
AfaI	GTAC	4 cut(s)	117, 415, 547, 562
AfiI	CCNNNNNNNGG	1 cut(s)	301
AflIII	ACRYGT	2 cut(s)	465, 570
AgsI	TTSAA	2 cut(s)	76, 387
AluBI	AGCT	4 cut(s)	71, 89, 325, 582
AluI	AGCT	4 cut(s)	71, 89, 325, 582
Alw26I	GTCTC	1 cut(s)	280
AoxI	GGCC	2 cut(s)	97, 513
ApeKI	GCWGC	2 cut(s)	185, 579
AsuHPI	GGTGA	1 cut(s)	445
BalI	TGGCCA	1 cut(s)	99
BbsI	GAAGAC	1 cut(s)	42
BbvI	GCAGC	2 cut(s)	172, 591
BceAI	ACGGC	1 cut(s)	579
BclI	TGATCA	1 cut(s)	459
BcoDI	GTCTC	1 cut(s)	280
BfaI	CTAG	2 cut(s)	60, 598
BfuAI	ACCTGC	1 cut(s)	385
BglII	AGATCT	2 cut(s)	167, 424
BisI	GCNGC	2 cut(s)	186, 580
BlsI	GCNGC	2 cut(s)	187, 581
BmcAI	AGTACT	1 cut(s)	415
BpiI	GAAGAC	1 cut(s)	42
BpuEI	CTTGAG	1 cut(s)	400
BsaBI	GATNNNNATC	1 cut(s)	159
BsaJI	CCNNGG	2 cut(s)	6, 516
Bsc4I	CCNNNNNNNGG	1 cut(s)	301
Bse1I	ACTGG	1 cut(s)	306
Bse3DI	GCAATG	3 cut(s)	153, 288, 448
Bse8I	GATNNNNATC	1 cut(s)	159
BseDI	CCNNGG	2 cut(s)	6, 516
BseJI	GATNNNNATC	1 cut(s)	159
BseLI	CCNNNNNNNGG	1 cut(s)	301
BseMI	GCAATG	3 cut(s)	153, 288, 448
BseMII	CTCAG	2 cut(s)	155, 431
BseNI	ACTGG	1 cut(s)	306
BseRI	GAGGAG	1 cut(s)	290
BseXI	GCAGC	2 cut(s)	172, 591
BseYI	CCCAGC	2 cut(s)	307, 312
BshFI	GGCC	2 cut(s)	99, 515
BslI	CCNNNNNNNGG	1 cut(s)	301
BsmAI	GTCTC	1 cut(s)	280
BsmI	GAATGC	1 cut(s)	599
BsnI	GGCC	2 cut(s)	99, 515
Bsp143I	GATC	3 cut(s)	167, 424, 459
Bsp19I	CCATGG	1 cut(s)	6
BspANI	GGCC	2 cut(s)	99, 515
BspCNI	CTCAG	2 cut(s)	156, 430
BspMI	ACCTGC	1 cut(s)	385
BsrDI	GCAATG	3 cut(s)	153, 288, 448
BsrI	ACTGG	1 cut(s)	306
BssECI	CCNNGG	2 cut(s)	6, 516
BssMI	GATC	3 cut(s)	167, 424, 459
BssT1I	CCWWGG	2 cut(s)	6, 516
Bst4CI	ACNGT	1 cut(s)	43
BstC8I	GCNNGC	1 cut(s)	392
BstDEI	CTNAG	2 cut(s)	164, 417
BstDSI	CCRYGG	1 cut(s)	6
BstKTI	GATC	3 cut(s)	170, 427, 462
BstMAI	GTCTC	1 cut(s)	280
BstMBI	GATC	3 cut(s)	167, 424, 459
BstNSI	RCATGY	3 cut(s)	363, 469, 574
BstV1I	GCAGC	2 cut(s)	172, 591
BstV2I	GAAGAC	1 cut(s)	42
BstX2I	RGATCY	2 cut(s)	167, 424
BstYI	RGATCY	2 cut(s)	167, 424
BsuRI	GGCC	2 cut(s)	99, 515
BtgI	CCRYGG	1 cut(s)	6
BveI	ACCTGC	1 cut(s)	385
Cac8I	GCNNGC	1 cut(s)	392
CseI	GACGC	1 cut(s)	20
Csp6I	GTAC	4 cut(s)	116, 414, 546, 561
CviAII	CATG	6 cut(s)	7, 95, 360, 430, 466, 571
CviQI	GTAC	4 cut(s)	116, 414, 546, 561
DdeI	CTNAG	2 cut(s)	164, 417
DpnI	GATC	3 cut(s)	169, 426, 461
DpnII	GATC	3 cut(s)	167, 424, 459
DrdI	GACNNNNNNGTC	1 cut(s)	46
DseDI	GACNNNNNNGTC	1 cut(s)	46
EaeI	YGGCCR	1 cut(s)	97
Eco130I	CCWWGG	2 cut(s)	6, 516
Eco147I	AGGCCT	1 cut(s)	515
Eco32I	GATATC	1 cut(s)	532
EcoRV	GATATC	1 cut(s)	532
EcoT14I	CCWWGG	2 cut(s)	6, 516
ErhI	CCWWGG	2 cut(s)	6, 516
FaeI	CATG	6 cut(s)	10, 98, 363, 433, 469, 574
FatI	CATG	6 cut(s)	6, 94, 359, 429, 465, 570
FbaI	TGATCA	1 cut(s)	459
Fnu4HI	GCNGC	2 cut(s)	186, 580
Fsp4HI	GCNGC	2 cut(s)	186, 580
FspBI	CTAG	2 cut(s)	60, 598
GluI	GCNGC	2 cut(s)	186, 580
GsaI	CCCAGC	2 cut(s)	311, 316
HaeIII	GGCC	2 cut(s)	99, 515
HgaI	GACGC	1 cut(s)	20
Hin1II	CATG	6 cut(s)	10, 98, 363, 433, 469, 574
HphI	GGTGA	1 cut(s)	445
Hpy166II	GTNNAC	2 cut(s)	118, 482
Hpy188I	TCNGA	1 cut(s)	165
Hpy188III	TCNNGA	1 cut(s)	590
Hpy8I	GTNNAC	2 cut(s)	118, 482
HpyCH4III	ACNGT	1 cut(s)	43
HpyCH4IV	ACGT	1 cut(s)	114
HpyCH4V	TGCA	6 cut(s)	146, 188, 257, 400, 525, 579
HpyF3I	CTNAG	2 cut(s)	164, 417
HpySE526I	ACGT	1 cut(s)	114
Hsp92II	CATG	6 cut(s)	10, 98, 363, 433, 469, 574
Ksp22I	TGATCA	1 cut(s)	459
Kzo9I	GATC	3 cut(s)	167, 424, 459
LpnPI	CCDG	7 cut(s)	156, 287, 293, 298, 380, 404, 435
Lsp1109I	GCAGC	2 cut(s)	172, 591
MaeI	CTAG	2 cut(s)	60, 598
MaeII	ACGT	1 cut(s)	114
MaeIII	GTNAC	2 cut(s)	25, 37
MalI	GATC	3 cut(s)	169, 426, 461
MboI	GATC	3 cut(s)	167, 424, 459
MboII	GAAGA	2 cut(s)	42, 357
MflI	RGATCY	2 cut(s)	167, 424
MlsI	TGGCCA	1 cut(s)	99
MluNI	TGGCCA	1 cut(s)	99
MmeI	TCCRAC	2 cut(s)	132, 319
MnlI	CCTC	5 cut(s)	102, 257, 268, 271, 325
Mox20I	TGGCCA	1 cut(s)	99
MscI	TGGCCA	1 cut(s)	99
MseI	TTAA	2 cut(s)	65, 510
MslI	CAYNNNNRTG	1 cut(s)	571
Msp20I	TGGCCA	1 cut(s)	99
Mva1269I	GAATGC	1 cut(s)	599
NcoI	CCATGG	1 cut(s)	6
NdeII	GATC	3 cut(s)	167, 424, 459
NlaIII	CATG	6 cut(s)	10, 98, 363, 433, 469, 574
NmuCI	GTSAC	1 cut(s)	37
NspI	RCATGY	3 cut(s)	363, 469, 574
PaqCI	CACCTGC	1 cut(s)	385
PceI	AGGCCT	1 cut(s)	515
PciI	ACATGT	2 cut(s)	465, 570
PctI	GAATGC	1 cut(s)	599
PflMI	CCANNNNNTGG	1 cut(s)	301
PkrI	GCNGC	2 cut(s)	187, 581
PscI	ACATGT	2 cut(s)	465, 570
PspFI	CCCAGC	2 cut(s)	307, 312
PsuI	RGATCY	2 cut(s)	167, 424
RsaI	GTAC	4 cut(s)	117, 415, 547, 562
RsaNI	GTAC	4 cut(s)	116, 414, 546, 561
RseI	CAYNNNNRTG	1 cut(s)	571
SaqAI	TTAA	2 cut(s)	65, 510
SatI	GCNGC	2 cut(s)	186, 580
Sau3AI	GATC	3 cut(s)	167, 424, 459
ScaI	AGTACT	1 cut(s)	415
SetI	ASST	8 cut(s)	73, 85, 91, 117, 268, 327, 399, 584
SmiMI	CAYNNNNRTG	1 cut(s)	571
SmlI	CTYRAG	1 cut(s)	379
SmoI	CTYRAG	1 cut(s)	379
SseBI	AGGCCT	1 cut(s)	515
SspMI	CTAG	2 cut(s)	60, 598
StuI	AGGCCT	1 cut(s)	515
StyI	CCWWGG	2 cut(s)	6, 516
TaaI	ACNGT	1 cut(s)	43
TaiI	ACGT	1 cut(s)	117
TatI	WGTACW	1 cut(s)	413
Tru1I	TTAA	2 cut(s)	65, 510
Tru9I	TTAA	2 cut(s)	65, 510
TseFI	GTSAC	1 cut(s)	37
TseI	GCWGC	2 cut(s)	185, 579
Tsp45I	GTSAC	1 cut(s)	37
TspDTI	ATGAA	1 cut(s)	83
Van91I	CCANNNNNTGG	1 cut(s)	301
XceI	RCATGY	3 cut(s)	363, 469, 574
XspI	CTAG	2 cut(s)	60, 598
ZrmI	AGTACT	1 cut(s)	415

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.